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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020754 ID=TCONS_00020754|Name=TCONS_00020754|organism=Clytia hemisphaerica|type=transcript|length=2021bp
ctacagcttaaccagcgtgcgacgccgggtaccggctagttctATATAAA
AACTTGTCAGCATTTTTGGGATACACTGTATTTCTACCCTCGTGAAATTT
ATAAAGTAGCAATAATTGGTGCACcgttcccactggaaaaattggccaaa
atatcatccccggTGGATCTTCCAATttctgtccccactgaaaataatca
aataaaccaatcctctctgcaaaatattatgctatttttcccatcccaaC
TGAATTCTcggacttgaaaacaaaagaattgaaatccccagcctaaaaac
tatggaaatatcaatccccatcgagtttgagtccgttatttttatcctat
CACTGGTTGAAAAAATCCTAGCGGGTTTGTGATGAGAAGGGGCTATTCTG
AATGTATTATAATTATGTTCCAAGTAAATCAATGCAAAGAACCCCCTATT
AAATTGATACTCGAATCGGATCAATTTAGCGTTACACCACTGAAATATTT
CCTCCATTTCGTTTATATCTTTTTGGATAATCTCAAATGATGGAAAACCA
CACAattccttggaaaaaattataatgacATTGTTTCTTAAAAAGGCATT
TTCCACAACAGTGTGGGCTTTTTCGAACATCTATCATTCGAATTATTTCC
CAGTGTTCGTCAAGAGTAcaatactctctataattcgactTTCCGTTCGA
GCTCGAATAAGTGAGAGTTAAATTTACTTTCATAACCCGAACTAAAAGTG
CCATGTCTCTGCTCAAATAATCTTGTAAACAAGCTTCAAAATCAAATATG
CCACGATCTCAATCAATGAGATAAATGAAGATCCGATGACCAGCCCAATA
AAACCACCAATCTCACATGCCATTTGATCCCAAGCATAGACAGCTTTCTC
TTCCATGATTTTATACGAATCAACAAATTGATATTGAAGTCCAATAGAAT
AGACTAGTGTTCTGTTATTTTGACGTCTCTTATAAAGACGTCCAGCTTTA
CTTTCTGAGAACGTGGTTATGGTTGTAAGATCCATACTAACGCAACCAAG
AGTACACGAATAGACCTCTTTCACTTCCCGGTTTTGGTTACTCATGATAC
ATTGAGCTATCTGGATGCTGGTCTTATTCTCTGACTTGTACTTgtatttt
tgtttgatatctttgggaataaatttatcaacatAATCATAAACAGCACC
ACAGATTTTATAAATCTCTATAAATTGGTTCGATTCAATGCAAGAGCGTC
TTGAATAGGCACCAGGAAATATATCCGCACCTTTTTCATCTGAACAATTC
GAAGGATACGGACTTTTAAGTCGTTTAACAATCGTTTTGTCAAGTTTTAT
TTGATAACCTTTGAAAGAATCGATCTCTAAGCTCTTGGTGAAATCAACTT
CAGTAATTGTTGGATTATGAGGCATTGCCTTCATCTCAACATCGTATAAA
TCACGGTCACGAGGCACCTGGAACTGGAACTCAATATCGACGTGGCCGTA
CATATCCGATAAGGTCCCTTCCGGATTTAAGACCAAGCAGGTCCCATTTA
CCGACGTTAGCGATTTCAAATATTTCGGTGATAAACAGTTTTTACCTCCC
CATGTTTTACATCTAGTGACATTGAATATCCCGTTATTCCAAAATCGGTT
TCTAACATGATGAATCGGGTTTATGGGGAGAGATCGGTTTCGACAATTTA
GCGGTATTTCATTTCTTCTGGTGATAATTTCTTTGATCGGTATGGAACAG
TATGCGAAATAGTTTCGATCGAAAGAATGCTTCTCACAAATGGTCAAGCT
TGGGAAATGGTTAACGTCACTGATCATCGAACTGATTTCGGTATAGACAT
CATAATTCAAATATTTGCGAATGAGACCTGAATGAATCGAAGAAATTAAT
ATAGTTAGAGTGGAACCTCCCAATTTACTTGATCTACACTTTATATCATT
AAAAGAACAATAGTAATAAATTTATCGTGAATTTCCTTgttcaaaattga
taaaaatctaTCCAATACCAG Run BLAST on NCBI protein sequence of TCONS_00020754-protein >TCONS_00020754-protein ID=TCONS_00020754-protein|Name=TCONS_00020754-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MISDVNHFPSLTICEKHSFDRNYFAYCSIPIKEIITRRNEIPLNCRNRSL
PINPIHHVRNRFWNNGIFNVTRCKTWGGKNCLSPKYLKSLTSVNGTCLVL
NPEGTLSDMYGHVDIEFQFQVPRDRDLYDVEMKAMPHNPTITEVDFTKSL
EIDSFKGYQIKLDKTIVKRLKSPYPSNCSDEKGADIFPGAYSRRSCIESN
QFIEIYKICGAVYDYVDKFIPKDIKQKYKYKSENKTSIQIAQCIMSNQNR
EVKEVYSCTLGCVSMDLTTITTFSESKAGRLYKRRQNNRTLVYSIGLQYQ
FVDSYKIMEEKAVYAWDQMACEIGGFIGLVIGSSFISLIEIVAYLILKLV
YKII Run BLAST on NCBI transcript from alignment at sc0000365:300750..302770 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020754 ID=TCONS_00020754|Name=TCONS_00020754|organism=Clytia hemisphaerica|type=transcript|length=2021bp|location=Sequence derived from alignment at sc0000365:300750..302770 (Clytia hemisphaerica)
CTGGTATTGGAtagatttttatcaattttgaacAAGGAAATTCACGATAA
ATTTATTACTATTGTTCTTTTAATGATATAAAGTGTAGATCAAGTAAATT
GGGAGGTTCCACTCTAACTATATTAATTTCTTCGATTCATTCAGGTCTCA
TTCGCAAATATTTGAATTATGATGTCTATACCGAAATCAGTTCGATGATC
AGTGACGTTAACCATTTCCCAAGCTTGACCATTTGTGAGAAGCATTCTTT
CGATCGAAACTATTTCGCATACTGTTCCATACCGATCAAAGAAATTATCA
CCAGAAGAAATGAAATACCGCTAAATTGTCGAAACCGATCTCTCCCCATA
AACCCGATTCATCATGTTAGAAACCGATTTTGGAATAACGGGATATTCAA
TGTCACTAGATGTAAAACATGGGGAGGTAAAAACTGTTTATCACCGAAAT
ATTTGAAATCGCTAACGTCGGTAAATGGGACCTGCTTGGTCTTAAATCCG
GAAGGGACCTTATCGGATATGTACGGCCACGTCGATATTGAGTTCCAGTT
CCAGGTGCCTCGTGACCGTGATTTATACGATGTTGAGATGAAGGCAATGC
CTCATAATCCAACAATTACTGAAGTTGATTTCACCAAGAGCTTAGAGATC
GATTCTTTCAAAGGTTATCAAATAAAACTTGACAAAACGATTGTTAAACG
ACTTAAAAGTCCGTATCCTTCGAATTGTTCAGATGAAAAAGGTGCGGATA
TATTTCCTGGTGCCTATTCAAGACGCTCTTGCATTGAATCGAACCAATTT
ATAGAGATTTATAAAATCTGTGGTGCTGTTTATGATTatgttgataaatt
tattcccaaagatatcaaacaaaaatacAAGTACAAGTCAGAGAATAAGA
CCAGCATCCAGATAGCTCAATGTATCATGAGTAACCAAAACCGGGAAGTG
AAAGAGGTCTATTCGTGTACTCTTGGTTGCGTTAGTATGGATCTTACAAC
CATAACCACGTTCTCAGAAAGTAAAGCTGGACGTCTTTATAAGAGACGTC
AAAATAACAGAACACTAGTCTATTCTATTGGACTTCAATATCAATTTGTT
GATTCGTATAAAATCATGGAAGAGAAAGCTGTCTATGCTTGGGATCAAAT
GGCATGTGAGATTGGTGGTTTTATTGGGCTGGTCATCGGATCTTCATTTA
TCTCATTGATTGAGATCGTGGCATATTTGATTTTGAAGCTTGTTTACAAG
ATTATTTGAGCAGAGACATGGCACTTTTAGTTCGGGTTATGAAAGTAAAT
TTAACTCTCACTTATTCGAGCTCGAACGGAAagtcgaattatagagagta
ttgTACTCTTGACGAACACTGGGAAATAATTCGAATGATAGATGTTCGAA
AAAGCCCACACTGTTGTGGAAAATGCCTTTTTAAGAAACAATgtcattat
aattttttccaaggaatTGTGTGGTTTTCCATCATTTGAGATTATCCAAA
AAGATATAAACGAAATGGAGGAAATATTTCAGTGGTGTAACGCTAAATTG
ATCCGATTCGAGTATCAATTTAATAGGGGGTTCTTTGCATTGATTTACTT
GGAACATAATTATAATACATTCAGAATAGCCCCTTCTCATCACAAACCCG
CTAGGATTTTTTCAACCAGTGataggataaaaataacggactcaaactcg
atggggattgatatttccatagtttttaggctggggatttcaattctttt
gttttcaagtccgAGAATTCAGttgggatgggaaaaatagcataatattt
tgcagagaggattggtttatttgattattttcagtggggacagaaATTGG
AAGATCCAccggggatgatattttggccaatttttccagtgggaacgGTG
CACCAATTATTGCTACTTTATAAATTTCACGAGGGTAGAAATACAGTGTA
TCCCAAAAATGCTGACAAGTTTTTATATagaactagccggtacccggcgt
cgcacgctggttaagctgtag Coding sequence (CDS) from alignment at sc0000365:300750..302770 >TCONS_00020754 ID=TCONS_00020754|Name=TCONS_00020754|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at sc0000365:300750..302770 (Clytia hemisphaerica)
ATGATCAGTGACGTTAACCATTTCCCAAGCTTGACCATTTGTGAGAAGCA
TTCTTTCGATCGAAACTATTTCGCATACTGTTCCATACCGATCAAAGAAA
TTATCACCAGAAGAAATGAAATACCGCTAAATTGTCGAAACCGATCTCTC
CCCATAAACCCGATTCATCATGTTAGAAACCGATTTTGGAATAACGGGAT
ATTCAATGTCACTAGATGTAAAACATGGGGAGGTAAAAACTGTTTATCAC
CGAAATATTTGAAATCGCTAACGTCGGTAAATGGGACCTGCTTGGTCTTA
AATCCGGAAGGGACCTTATCGGATATGTACGGCCACGTCGATATTGAGTT
CCAGTTCCAGGTGCCTCGTGACCGTGATTTATACGATGTTGAGATGAAGG
CAATGCCTCATAATCCAACAATTACTGAAGTTGATTTCACCAAGAGCTTA
GAGATCGATTCTTTCAAAGGTTATCAAATAAAACTTGACAAAACGATTGT
TAAACGACTTAAAAGTCCGTATCCTTCGAATTGTTCAGATGAAAAAGGTG
CGGATATATTTCCTGGTGCCTATTCAAGACGCTCTTGCATTGAATCGAAC
CAATTTATAGAGATTTATAAAATCTGTGGTGCTGTTTATGATTatgttga
taaatttattcccaaagatatcaaacaaaaatacAAGTACAAGTCAGAGA
ATAAGACCAGCATCCAGATAGCTCAATGTATCATGAGTAACCAAAACCGG
GAAGTGAAAGAGGTCTATTCGTGTACTCTTGGTTGCGTTAGTATGGATCT
TACAACCATAACCACGTTCTCAGAAAGTAAAGCTGGACGTCTTTATAAGA
GACGTCAAAATAACAGAACACTAGTCTATTCTATTGGACTTCAATATCAA
TTTGTTGATTCGTATAAAATCATGGAAGAGAAAGCTGTCTATGCTTGGGA
TCAAATGGCATGTGAGATTGGTGGTTTTATTGGGCTGGTCATCGGATCTT
CATTTATCTCATTGATTGAGATCGTGGCATATTTGATTTTGAAGCTTGTT
TACAAGATTATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020754-exon-sc0000365-1491911889:300750..302770 | TCONS_00020754-exon-sc0000365-1491911889:300750..302770 | Clytia hemisphaerica | exon |
| TCONS_00020754-exon-sc0000365-1510915933:300750..302770 | TCONS_00020754-exon-sc0000365-1510915933:300750..302770 | Clytia hemisphaerica | exon |
| TCONS_00020754-exon-sc0000365-1575043694:300750..302770 | TCONS_00020754-exon-sc0000365-1575043694:300750..302770 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000365 | supercontig | sc0000365:300750..302770 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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