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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020721 ID=TCONS_00020721|Name=TCONS_00020721|organism=Clytia hemisphaerica|type=transcript|length=2637bp
TAAGAATCATTGATTATTATATTGGTGCATTTCTACACATGTGAAGATTT
ATTACACGTGGATAGATGGCTGCTGTCAATCGTTTCCACTTGCCAAGTAA
TGTACTGATGCTTCTATTGATATTATTACATATCCAACCAATTCTCAACC
AAAAACTGCAATTGAATATCTTAGGGCTGTTTACTACCACTGGCTGCTCA
CCAGGCAATGAATTCGAATGTCAAAACGCGTtatccaatcaaaattcaat
gaTAGAAGTCCACCGGCGTCAAACATTTTGGTTTGACGCACCTCTTTgct
ttaaagatattcaaaacaGGTCCGACTTGTTAATAGACACTGTTTTACCG
CTCACAACAGATGAAAAACAGCATTACGTCATCAAAGATTGCGTTAACAA
AAATGGTAGCTTCGTCAGGTCGAGTGACAGGATCGTGATCCTGACCTACC
TCTCATTTCAGCTTACAAAACTGGTAAGCTCTTTAATTCTacctttaaac
tcaatggataTGGTGCTTGTCAGTATTACAGACAGGCCGATGTACCCGTC
CTACTATATCGACCACCCGTTGGCTATCTATACCTATGAGGCGGGGTTTG
GCGTTGAAATGCATAATCTACACTCCGATACTAAAACAAAGTTAAACGTT
TCCTACTCGGCGATCATCAATCTACACTCAGGGGAAAGTCCAAGTCACAT
CGTAAACCCCAAGGGTGAAAACCCTTGTAAAGGAAACCCCTCTTCGTCTG
CATTTTGTCTTTACACAAACATAAACCCGACCGATTGTTACAAGGAATTA
ACGATCAATGTTAATAATAAGTCCGCAATCGAAGAATCACGCAATCTGAC
TCAAGAATATGGACTATCATTTGTTATTTTGGCCGGCGATTCCCGGTCTA
TTATTCGCTATCAGAAGAAAGTCGATGGACACAGGGTGAAAATGAACGGA
ACATTTTATCTCCCATACATTACtcaattcaaaaatattgacatcTATCA
AAAAGATGTTGAAGATTTATCTTACCGTGAAAATAATCTACTTAGTAACT
TTCCAGGATCTTTAGCGTTGAATTCGTTCATGTACGACGCGCTAGATTTT
CCAAATGCGCTATTGCGTGATTTAAGGAATCAAAGATCGAACAGAGTTCT
GTGGAAGCGTTTACTCAAAAACCAACATTTTTACTTCTTTTGGAGAATGT
GGTTAAGATatgataaaattaaaatttatgtACAAAGTTATGAACGTGGG
GATGAAATAACATTAGATCTACTTTTAAAGATCTATCGACGGTCTTGGTT
GTTAGAAGATGGCTTTAAATATTTGATGCGTCAAAAAGAAATGATATCAC
CTTTGACAGATTTCTGGAAAAAGACTTATTATATCGAAAATGTGAGCCCG
CAAAAACTTTTATCCCAATGGTCATATAACCCGAGCAAGGCACTGGAATC
GAGACCGTACTGCGatgaaaaaataccaaactgTACAGCAGGTTATGAAC
TCGTTCACTCATATTATAAAGAACAAGATTGGAGTCAAAGTTATGGCTGG
CACTGTGTTCAATGCAAACCAAATTTCTACAAGCCAGTTGCCAACAACAA
CCAAAAATGCAAACAATGTTCCTATCCATATACTGTTAATAAAAACCATA
CTGAATGTTACAACCCTTTCAATGACGTCACTcttcaaataaccaatcaa
ACGATGATGTTTATCATTGCTCCTGCTGGGATTTTTACATTAATGACTTT
ACTTGCAATGGTACTGTTCTTGATCAAACGAGAATCCCCGATAGTGAAAC
TAGCAAATCGTAAAATGACTATGATTCAATTAACCACCCATTTTCTGTTG
TTCACTTTACCCATTTTTCTTCACACGCACGCACTATCACAACCTATATG
CATAGGGCGTCAGTTGTTCCTTGGTATAGCTTTTAGCATCACGCTTTCAA
TCAACatatcaaaatctcaaaaactatACATGATTGTGACCAGTAAAGTT
AGAATGTCCAAATCGGAGGTTCTGATGACGAACGCGTCAGAATGGATTAT
CATATTGGTTGCCTTGGTGataaacattctttttcaagtGTTATATTTCA
TGCAAAATGGTTTCAAAGGTGTGACCGTAGTCAGCAAGTACTTTGATTTG
AGTGTCACCAAGGAATTATACTGTAGCAACCAGAATATGATTTATGTACA
ACTTCTCATGGCTACAATCCTCTCGCTTTGTAACGGAGTCCAAGGCTTCA
GAGCACGGAATTTACCGTCTCGTTTCCAGGAGGCCAACCATGTGATCTAT
TCCTCATTCATCTCCGGTATCGTTTTTATAGCAGCTACCCCCGTATTTTT
CACACAGCAATCGATGGTCGACCGTAGCTTTTTGATGTTGTTGATTACGA
CAATTTTCAATGTAACTCATTTTGTGTTGCTATACGGCTATAAAATGTTT
GTCATGGTGTTCAGACCACACTTGAACACTAAAAAGGCTATCAACAAACA
ACGGATTCAAGTAATCGAAAACAAGAACGCATGTTAAACTGGATTATTAG
TTTATCactgattgtttttattttttcattttttcacctATCACCATAAT
ACTTTAACGATTTTTTCGGCgacccaaaaaatatctg Run BLAST on NCBI protein sequence of TCONS_00020721-protein >TCONS_00020721-protein ID=TCONS_00020721-protein|Name=TCONS_00020721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=823bp
MAAVNRFHLPSNVLMLLLILLHIQPILNQKLQLNILGLFTTTGCSPGNEF
ECQNALSNQNSMIEVHRRQTFWFDAPLCFKDIQNRSDLLIDTVLPLTTDE
KQHYVIKDCVNKNGSFVRSSDRIVILTYLSFQLTKLVSSLILPLNSMDMV
LVSITDRPMYPSYYIDHPLAIYTYEAGFGVEMHNLHSDTKTKLNVSYSAI
INLHSGESPSHIVNPKGENPCKGNPSSSAFCLYTNINPTDCYKELTINVN
NKSAIEESRNLTQEYGLSFVILAGDSRSIIRYQKKVDGHRVKMNGTFYLP
YITQFKNIDIYQKDVEDLSYRENNLLSNFPGSLALNSFMYDALDFPNALL
RDLRNQRSNRVLWKRLLKNQHFYFFWRMWLRYDKIKIYVQSYERGDEITL
DLLLKIYRRSWLLEDGFKYLMRQKEMISPLTDFWKKTYYIENVSPQKLLS
QWSYNPSKALESRPYCDEKIPNCTAGYELVHSYYKEQDWSQSYGWHCVQC
KPNFYKPVANNNQKCKQCSYPYTVNKNHTECYNPFNDVTLQITNQTMMFI
IAPAGIFTLMTLLAMVLFLIKRESPIVKLANRKMTMIQLTTHFLLFTLPI
FLHTHALSQPICIGRQLFLGIAFSITLSINISKSQKLYMIVTSKVRMSKS
EVLMTNASEWIIILVALVINILFQVLYFMQNGFKGVTVVSKYFDLSVTKE
LYCSNQNMIYVQLLMATILSLCNGVQGFRARNLPSRFQEANHVIYSSFIS
GIVFIAATPVFFTQQSMVDRSFLMLLITTIFNVTHFVLLYGYKMFVMVFR
PHLNTKKAINKQRIQVIENKNAC Run BLAST on NCBI transcript from alignment at sc0000363:142343..144979 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020721 ID=TCONS_00020721|Name=TCONS_00020721|organism=Clytia hemisphaerica|type=transcript|length=2637bp|location=Sequence derived from alignment at sc0000363:142343..144979 (Clytia hemisphaerica)
cagatattttttgggtcGCCGAAAAAATCGTTAAAGTATTATGGTGATag
gtgaaaaaatgaaaaaataaaaacaatcagtGATAAACTAATAATCCAGT
TTAACATGCGTTCTTGTTTTCGATTACTTGAATCCGTTGTTTGTTGATAG
CCTTTTTAGTGTTCAAGTGTGGTCTGAACACCATGACAAACATTTTATAG
CCGTATAGCAACACAAAATGAGTTACATTGAAAATTGTCGTAATCAACAA
CATCAAAAAGCTACGGTCGACCATCGATTGCTGTGTGAAAAATACGGGGG
TAGCTGCTATAAAAACGATACCGGAGATGAATGAGGAATAGATCACATGG
TTGGCCTCCTGGAAACGAGACGGTAAATTCCGTGCTCTGAAGCCTTGGAC
TCCGTTACAAAGCGAGAGGATTGTAGCCATGAGAAGTTGTACATAAATCA
TATTCTGGTTGCTACAGTATAATTCCTTGGTGACACTCAAATCAAAGTAC
TTGCTGACTACGGTCACACCTTTGAAACCATTTTGCATGAAATATAACac
ttgaaaaagaatgtttatCACCAAGGCAACCAATATGATAATCCATTCTG
ACGCGTTCGTCATCAGAACCTCCGATTTGGACATTCTAACTTTACTGGTC
ACAATCATGTatagtttttgagattttgatatGTTGATTGAAAGCGTGAT
GCTAAAAGCTATACCAAGGAACAACTGACGCCCTATGCATATAGGTTGTG
ATAGTGCGTGCGTGTGAAGAAAAATGGGTAAAGTGAACAACAGAAAATGG
GTGGTTAATTGAATCATAGTCATTTTACGATTTGCTAGTTTCACTATCGG
GGATTCTCGTTTGATCAAGAACAGTACCATTGCAAGTAAAGTCATTAATG
TAAAAATCCCAGCAGGAGCAATGATAAACATCATCGTttgattggttatt
tgaagAGTGACGTCATTGAAAGGGTTGTAACATTCAGTATGGTTTTTATT
AACAGTATATGGATAGGAACATTGTTTGCATTTTTGGTTGTTGTTGGCAA
CTGGCTTGTAGAAATTTGGTTTGCATTGAACACAGTGCCAGCCATAACTT
TGACTCCAATCTTGTTCTTTATAATATGAGTGAACGAGTTCATAACCTGC
TGTAcagtttggtattttttcatCGCAGTACGGTCTCGATTCCAGTGCCT
TGCTCGGGTTATATGACCATTGGGATAAAAGTTTTTGCGGGCTCACATTT
TCGATATAATAAGTCTTTTTCCAGAAATCTGTCAAAGGTGATATCATTTC
TTTTTGACGCATCAAATATTTAAAGCCATCTTCTAACAACCAAGACCGTC
GATAGATCTTTAAAAGTAGATCTAATGTTATTTCATCCCCACGTTCATAA
CTTTGTacataaattttaattttatcatATCTTAACCACATTCTCCAAAA
GAAGTAAAAATGTTGGTTTTTGAGTAAACGCTTCCACAGAACTCTGTTCG
ATCTTTGATTCCTTAAATCACGCAATAGCGCATTTGGAAAATCTAGCGCG
TCGTACATGAACGAATTCAACGCTAAAGATCCTGGAAAGTTACTAAGTAG
ATTATTTTCACGGTAAGATAAATCTTCAACATCTTTTTGATAgatgtcaa
tatttttgaattgaGTAATGTATGGGAGATAAAATGTTCCGTTCATTTTC
ACCCTGTGTCCATCGACTTTCTTCTGATAGCGAATAATAGACCGGGAATC
GCCGGCCAAAATAACAAATGATAGTCCATATTCTTGAGTCAGATTGCGTG
ATTCTTCGATTGCGGACTTATTATTAACATTGATCGTTAATTCCTTGTAA
CAATCGGTCGGGTTTATGTTTGTGTAAAGACAAAATGCAGACGAAGAGGG
GTTTCCTTTACAAGGGTTTTCACCCTTGGGGTTTACGATGTGACTTGGAC
TTTCCCCTGAGTGTAGATTGATGATCGCCGAGTAGGAAACGTTTAACTTT
GTTTTAGTATCGGAGTGTAGATTATGCATTTCAACGCCAAACCCCGCCTC
ATAGGTATAGATAGCCAACGGGTGGTCGATATAGTAGGACGGGTACATCG
GCCTGTCTGTAATACTGACAAGCACCAtatccattgagtttaaaggtAGA
ATTAAAGAGCTTACCAGTTTTGTAAGCTGAAATGAGAGGTAGGTCAGGAT
CACGATCCTGTCACTCGACCTGACGAAGCTACCATTTTTGTTAACGCAAT
CTTTGATGACGTAATGCTGTTTTTCATCTGTTGTGAGCGGTAAAACAGTG
TCTATTAACAAGTCGGACCtgttttgaatatctttaaagcAAAGAGGTGC
GTCAAACCAAAATGTTTGACGCCGGTGGACTTCTAtcattgaattttgat
tggataACGCGTTTTGACATTCGAATTCATTGCCTGGTGAGCAGCCAGTG
GTAGTAAACAGCCCTAAGATATTCAATTGCAGTTTTTGGTTGAGAATTGG
TTGGATATGTAATAATATCAATAGAAGCATCAGTACATTACTTGGCAAGT
GGAAACGATTGACAGCAGCCATCTATCCACGTGTAATAAATCTTCACATG
TGTAGAAATGCACCAATATAATAATCAATGATTCTTA Coding sequence (CDS) from alignment at sc0000363:142343..144979 >TCONS_00020721 ID=TCONS_00020721|Name=TCONS_00020721|organism=Clytia hemisphaerica|type=CDS|length=2472bp|location=Sequence derived from alignment at sc0000363:142343..144979 (Clytia hemisphaerica)
TTAACATGCGTTCTTGTTTTCGATTACTTGAATCCGTTGTTTGTTGATAG
CCTTTTTAGTGTTCAAGTGTGGTCTGAACACCATGACAAACATTTTATAG
CCGTATAGCAACACAAAATGAGTTACATTGAAAATTGTCGTAATCAACAA
CATCAAAAAGCTACGGTCGACCATCGATTGCTGTGTGAAAAATACGGGGG
TAGCTGCTATAAAAACGATACCGGAGATGAATGAGGAATAGATCACATGG
TTGGCCTCCTGGAAACGAGACGGTAAATTCCGTGCTCTGAAGCCTTGGAC
TCCGTTACAAAGCGAGAGGATTGTAGCCATGAGAAGTTGTACATAAATCA
TATTCTGGTTGCTACAGTATAATTCCTTGGTGACACTCAAATCAAAGTAC
TTGCTGACTACGGTCACACCTTTGAAACCATTTTGCATGAAATATAACac
ttgaaaaagaatgtttatCACCAAGGCAACCAATATGATAATCCATTCTG
ACGCGTTCGTCATCAGAACCTCCGATTTGGACATTCTAACTTTACTGGTC
ACAATCATGTatagtttttgagattttgatatGTTGATTGAAAGCGTGAT
GCTAAAAGCTATACCAAGGAACAACTGACGCCCTATGCATATAGGTTGTG
ATAGTGCGTGCGTGTGAAGAAAAATGGGTAAAGTGAACAACAGAAAATGG
GTGGTTAATTGAATCATAGTCATTTTACGATTTGCTAGTTTCACTATCGG
GGATTCTCGTTTGATCAAGAACAGTACCATTGCAAGTAAAGTCATTAATG
TAAAAATCCCAGCAGGAGCAATGATAAACATCATCGTttgattggttatt
tgaagAGTGACGTCATTGAAAGGGTTGTAACATTCAGTATGGTTTTTATT
AACAGTATATGGATAGGAACATTGTTTGCATTTTTGGTTGTTGTTGGCAA
CTGGCTTGTAGAAATTTGGTTTGCATTGAACACAGTGCCAGCCATAACTT
TGACTCCAATCTTGTTCTTTATAATATGAGTGAACGAGTTCATAACCTGC
TGTAcagtttggtattttttcatCGCAGTACGGTCTCGATTCCAGTGCCT
TGCTCGGGTTATATGACCATTGGGATAAAAGTTTTTGCGGGCTCACATTT
TCGATATAATAAGTCTTTTTCCAGAAATCTGTCAAAGGTGATATCATTTC
TTTTTGACGCATCAAATATTTAAAGCCATCTTCTAACAACCAAGACCGTC
GATAGATCTTTAAAAGTAGATCTAATGTTATTTCATCCCCACGTTCATAA
CTTTGTacataaattttaattttatcatATCTTAACCACATTCTCCAAAA
GAAGTAAAAATGTTGGTTTTTGAGTAAACGCTTCCACAGAACTCTGTTCG
ATCTTTGATTCCTTAAATCACGCAATAGCGCATTTGGAAAATCTAGCGCG
TCGTACATGAACGAATTCAACGCTAAAGATCCTGGAAAGTTACTAAGTAG
ATTATTTTCACGGTAAGATAAATCTTCAACATCTTTTTGATAgatgtcaa
tatttttgaattgaGTAATGTATGGGAGATAAAATGTTCCGTTCATTTTC
ACCCTGTGTCCATCGACTTTCTTCTGATAGCGAATAATAGACCGGGAATC
GCCGGCCAAAATAACAAATGATAGTCCATATTCTTGAGTCAGATTGCGTG
ATTCTTCGATTGCGGACTTATTATTAACATTGATCGTTAATTCCTTGTAA
CAATCGGTCGGGTTTATGTTTGTGTAAAGACAAAATGCAGACGAAGAGGG
GTTTCCTTTACAAGGGTTTTCACCCTTGGGGTTTACGATGTGACTTGGAC
TTTCCCCTGAGTGTAGATTGATGATCGCCGAGTAGGAAACGTTTAACTTT
GTTTTAGTATCGGAGTGTAGATTATGCATTTCAACGCCAAACCCCGCCTC
ATAGGTATAGATAGCCAACGGGTGGTCGATATAGTAGGACGGGTACATCG
GCCTGTCTGTAATACTGACAAGCACCAtatccattgagtttaaaggtAGA
ATTAAAGAGCTTACCAGTTTTGTAAGCTGAAATGAGAGGTAGGTCAGGAT
CACGATCCTGTCACTCGACCTGACGAAGCTACCATTTTTGTTAACGCAAT
CTTTGATGACGTAATGCTGTTTTTCATCTGTTGTGAGCGGTAAAACAGTG
TCTATTAACAAGTCGGACCtgttttgaatatctttaaagcAAAGAGGTGC
GTCAAACCAAAATGTTTGACGCCGGTGGACTTCTAtcattgaattttgat
tggataACGCGTTTTGACATTCGAATTCATTGCCTGGTGAGCAGCCAGTG
GTAGTAAACAGCCCTAAGATATTCAATTGCAGTTTTTGGTTGAGAATTGG
TTGGATATGTAATAATATCAATAGAAGCATCAGTACATTACTTGGCAAGT
GGAAACGATTGACAGCAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020721-exon-sc0000363-1491911889:142343..144979 | TCONS_00020721-exon-sc0000363-1491911889:142343..144979 | Clytia hemisphaerica | exon |
| TCONS_00020721-exon-sc0000363-1510915933:142343..144979 | TCONS_00020721-exon-sc0000363-1510915933:142343..144979 | Clytia hemisphaerica | exon |
| TCONS_00020721-exon-sc0000363-1575043694:142343..144979 | TCONS_00020721-exon-sc0000363-1575043694:142343..144979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000363 | supercontig | sc0000363:142343..144979 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00020721 vs. Swiss-Prot (Human)
Match: GRM4 (Metabotropic glutamate receptor 4 OS=Homo sapiens GN=GRM4 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 4.466e-16 Identity = 74/325 (22.77%), Postives = 143/325 (44.00%), Query Frame = 3
Query: 1548 WHCVQCKPNFYKPVANNNQKCKQCSYPYTVNKNHTECYNPFNDVTLQITNQTMMFIIAPAGIFTLMTLLAMVLFLIKRESPIVKLANRKMTMIQLTTHFLLFTLPIFLHTHALSQPICIGRQLFLGIAFSITLSINISKSQKLYMIVTSKVRMSKSEVLMTNASEWXXXXXXXXXXXXFQVLYFMQN------GFKGVTVVSKYFDLSVTKELYCSNQNMIYVQLLMATILSL--CNGVQGFRARNLPSRFQEANHVIYSSFISGIVFIAATPVFFTQQSMVDRSFLMLLITTIFNVTHFV----LLYGYKMFVMVFRPHLNTKK 2486
WHC C Y+ + CK C Y +N T C P + L+ + + + A + TL ++ F+ ++PIVK + R+++ + L FL + FL C R++FLG+ SI+ + ++K+ ++Y I R + ++ AS+ I + + +L ++F+ + F+ + F V K C ++ + LL ++L + C V + R +P F EA + ++ + + IV++A P+FF D+ ++ T+ +LY K+++++F P N K
Sbjct: 540 WHCEPCTGYQYQ---VDRYTCKTCPYDMRPTENRTGC-RPIPIIKLEWGSPWAVLPLFLAVVGIAATLFVVITFVRYNDTPIVKASGRELSYVLLAGIFLCYAT-TFLMIAEPDLGTCSLRRIFLGLGMSISYAALLTKTNRIYRIFEQGKRSVSAPRFISPASQLAITFSLISLQLLGICVWFVVDPSHSVVDFQDQRTLDPRFARGVLK---CDISDLSLICLLGYSMLLMVTCT-VYAIKTRGVPETFNEAKPIGFTMYTTCIVWLAFIPIFFGTSQSADKLYIQTTTLTVSVSLSASVSLGMLYMPKVYIILFHPEQNVPK 855
The following BLAST results are available for this feature:
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