TCONS_00020721-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020721-protein
Unique Name	TCONS_00020721-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	823

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020721-protein ID=TCONS_00020721-protein|Name=TCONS_00020721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=823bp
MAAVNRFHLPSNVLMLLLILLHIQPILNQKLQLNILGLFTTTGCSPGNEF
ECQNALSNQNSMIEVHRRQTFWFDAPLCFKDIQNRSDLLIDTVLPLTTDE
KQHYVIKDCVNKNGSFVRSSDRIVILTYLSFQLTKLVSSLILPLNSMDMV
LVSITDRPMYPSYYIDHPLAIYTYEAGFGVEMHNLHSDTKTKLNVSYSAI
INLHSGESPSHIVNPKGENPCKGNPSSSAFCLYTNINPTDCYKELTINVN
NKSAIEESRNLTQEYGLSFVILAGDSRSIIRYQKKVDGHRVKMNGTFYLP
YITQFKNIDIYQKDVEDLSYRENNLLSNFPGSLALNSFMYDALDFPNALL
RDLRNQRSNRVLWKRLLKNQHFYFFWRMWLRYDKIKIYVQSYERGDEITL
DLLLKIYRRSWLLEDGFKYLMRQKEMISPLTDFWKKTYYIENVSPQKLLS
QWSYNPSKALESRPYCDEKIPNCTAGYELVHSYYKEQDWSQSYGWHCVQC
KPNFYKPVANNNQKCKQCSYPYTVNKNHTECYNPFNDVTLQITNQTMMFI
IAPAGIFTLMTLLAMVLFLIKRESPIVKLANRKMTMIQLTTHFLLFTLPI
FLHTHALSQPICIGRQLFLGIAFSITLSINISKSQKLYMIVTSKVRMSKS
EVLMTNASEWIIILVALVINILFQVLYFMQNGFKGVTVVSKYFDLSVTKE
LYCSNQNMIYVQLLMATILSLCNGVQGFRARNLPSRFQEANHVIYSSFIS
GIVFIAATPVFFTQQSMVDRSFLMLLITTIFNVTHFVLLYGYKMFVMVFR
PHLNTKKAINKQRIQVIENKNAC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011623	XLOC_011623	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020721	TCONS_00020721	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR017978	GPCR_3_C

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 574..596 score: 32.07 coord: 738..759 score: 26.56 coord: 620..641 score: 23.72 coord: 715..738 score: 24.74
None	No IPR available	GENE3D	2.10.50.10		coord: 459..711 e-value: 3.8E-5 score: 23.1
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 559..789 e-value: 3.8E-20 score: 72.6
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 546..813 score: 22.217

Blast

[Close]

BLAST of TCONS_00020721-protein vs. Swiss-Prot (Human)
Match: GRM6 (Metabotropic glutamate receptor 6 OS=Homo sapiens GN=GRM6 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.236e-16
Identity = 71/326 (21.78%), Postives = 142/326 (43.56%), Query Frame = 0

Query:  495 WHCVQCKPNFYKPVANNNQKCKQCSYPYTVNKNHTECY-NPFNDVTLQITNQTMMFIIAPAGIFTLMTLLAMVLFLIKRESPIVKLANRKMTMIQLTTHFLLFTLPIFLHTHALSQPICIGRQLFLGIAFSITLSINISKSQKLYMIVTSKVRMSKSEVLMTNASEWIIILVALVINILFQVLYFMQNGFKGVTVVSKYFD-LSVTKE-----LYCSNQNMIYVQLLMATILSL--CNGVQGFRARNLPSRFQEANHVIYSSFISGIVFIAATPVFFTQQSMVDRSFLMLLITTIFNVTHFV----LLYGYKMFVMVFRPHLNTKK 807
            WHC  C    ++    +   C+ C        NHT C   P   ++          ++A  GI    T++A   F+    +PIV+ + R+++ + LT  FL++ +  FL        +C  R+LFLG+  +++ S  ++K+ ++Y I     R       ++  S+ +I      + ++  + +    G +    V  Y +  +V  E     L C   ++  +  L  ++L +  C  V   +AR +P  F EA  + ++ + + I+++A  P+FF      ++ ++     T+           +LY  K +V++F P  N +K
Sbjct:  538 WHCEACDGYRFQ---VDEFTCEACPGDMRPTPNHTGCRPTPVVRLSWSSPWAAPPLLLAVLGIVATTTVVAT--FVRYNNTPIVRASGRELSYVLLTGIFLIYAI-TFLMVAEPGAAVCAARRLFLGLGTTLSYSALLTKTNRIYRIFEQGKRSVTPPPFISPTSQLVITFSLTSLQVVGMIAWL---GARPPHSVIDYEEQRTVDPEQARGVLKCDMSDLSLIGCLGYSLLLMVTCT-VYAIKARGVPETFNEAKPIGFTMYTTCIIWLAFVPIFFGTAQSAEKIYIQTTTLTVSLSLSASVSLGMLYVPKTYVILFHPEQNVQK 853

The following BLAST results are available for this feature:

BLAST of TCONS_00020721-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020721-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM6	1.236e-16	21.78	Metabotropic glutamate receptor 6 OS=Homo sapiens ...	[more]

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TCONS_00020721-protein (polypeptide) - C. hemisphaerica