TCONS_00020709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020709
Unique NameTCONS_00020709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020709 ID=TCONS_00020709|Name=TCONS_00020709|organism=Clytia hemisphaerica|type=transcript|length=2200bp
TATAATTGTATATTAAATATTAtgtaatttgattttgataCATGTTGTTG
ATTATGTTTCtgtcttttttttcagattccATATCCTAGTAAATTCTAGT
AAAAGGAATATTATTGAATAATAaagttatatatattttacaaaataatt
tgCTACAAGAATGTATTCATGTTAAACAAGATTACAGTGTAATTGAAGCG
GAATTTCTGTCAGGTGGCAAAGTTATACTTGATCAATGGGGCATAGTCAC
AGCACATTTCATCAAACCAGCAATGAAGCTCTGAATCTAAACAGACCTAT
GTCAACAACCTCGGGAAAAAGTAAAGATTTGCCACCAAACCTGGATAGAT
TTAATGATTTGACACAACTACCTCCTGAAGTTGCTGtacaaattctttca
aatttgaATGCCACTGATTTGTGTTTGGCTTCTTGTGTTTGGAAGGATTT
GGCAGAAAATGAATTGCTTTGGAAAAAGCTTTGCTTTTCCAAATGGGGAT
ATACAAGCATTTATGGCAATTTGAAGTATTCTCATATTTCAATCAAGCTT
AagaaaccaaTTTTCAAGAACCTATACTTATCATTAGATGAAGCTACTCT
TATATTTGGATTCCGCCCTCATCAGGGTATAAAATATCTGACAGACCATA
ACATTATTGAAGAAGAAACGGAAGAAGTTGCTAAATTCATACATCACACA
TCTTCACTATCCAATAAATCTCTCACCAAGTATCTCAAAGACAAGAGAGA
AGTGTTGGATCTTTTAGTCATGTATATGAATTTTACTGGTTTTACCATAT
GTGACGGGCTTAggaaatttttcaagaaaattcacCCACCAGAGGAACGA
GGCAATTTCTTAGATGTCTTGATAGAGAAATTTTCACATCGATTCATTGA
ATGCAATCCCACGTCAGATCTCAACCAAGAGCATATATCTGTGTTGTGTT
ATTCATTGATGTTATTAAGTGTCGACTTGTACAGCCCACATGTTCGAAAC
AAAATGTCGAAACGTGAATATATTAAGAACAATCATCAAGTTTTAAATGG
TGAAGTTAGTCGAGAGACACTTGGTGATTTTTACGACGATGTTTATTTAA
ATGGACACATAGTGCCTTCTCATTGTAAACAAGTCAATAAACGGAAAGGT
GGCAAACGACAGCATTGCTTTCCATTTTATAGACCCTATGGTGCCATCTT
TGAGATAAAACCGATAGAACTGAAGCTGTTGAGTTGTAACTGCTGATAGT
TTCGGGTTTTAGATTGTATAGATATTTTTTGATACAGGGATGAAATATGT
GGTCGGAATTACTGATCTAACAACATTTTATGCCTCTAAAATGCTCCCTT
CACATGCTTTTTATAAGggaaattttataagaacgcgAGGCTTAGTTAGT
GTCAAAGTCCTagaataaatgaaaacaaaataaaaaagagaacttttcga
aaagttttaAGAGCATATCAGACCATtcaattttatatccatacagaggG
TGGATgaacattttcagggggtaatCCGAGAGGAATTATCAGGGGGTCTA
ATGGAGTGATTTTTTCCAcagggtaaaaagttattctaaagtTTTCAGGG
GGTaagagactgattttagttAGTCCCGTCATTATAAGGTATGTaagaaa
ttttctaaatttttttttgcaaattttgccattttccaggggtacCCATA
CATTTCCAAgaattcttttttataattgaaaaggttcgtccaccccaaTG
TACGGATTTTTTTAACGGGACAGCCATTTGTTATGAAAAACTTTCCTGTT
CCGATTGCTCAACTTCTTGGTCCGCAACCGATTTTcgttgaatttcaaat
tttcttctttatcttgAGCTTATTATTGcaactttcaatttttatcaaga
gacaaatttgttttagttcgaaaattatatttcatttgttttttctttca
atgaaaTTAAATATGATTGTTAAATAGATTTTAATAGTAGTAAATATTGT
AATTTATAGTTTTTCTTGTTGTCACTTatacataaattatttttttcttt
ttcaacagCTATTGTTTATAAAACCGAAATGCAAATTCACTTGCAAAGTA
AGAAAACATCGTCGTATTTTGTTTAATGTAAAACTGAGCCCACTGGCGCA
TCCAAATTAtcttattataaatattttcaacaataccctaacaggaaaat
Run BLAST on NCBI

protein sequence of TCONS_00020709-protein

>TCONS_00020709-protein ID=TCONS_00020709-protein|Name=TCONS_00020709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MGHSHSTFHQTSNEALNLNRPMSTTSGKSKDLPPNLDRFNDLTQLPPEVA
VQILSNLNATDLCLASCVWKDLAENELLWKKLCFSKWGYTSIYGNLKYSH
ISIKLKKPIFKNLYLSLDEATLIFGFRPHQGIKYLTDHNIIEEETEEVAK
FIHHTSSLSNKSLTKYLKDKREVLDLLVMYMNFTGFTICDGLRKFFKKIH
PPEERGNFLDVLIEKFSHRFIECNPTSDLNQEHISVLCYSLMLLSVDLYS
PHVRNKMSKREYIKNNHQVLNGEVSRETLGDFYDDVYLNGHIVPSHCKQV
NKRKGGKRQHCFPFYRPYGAIFEIKPIELKLLSCNC
Run BLAST on NCBI

transcript from alignment at sc0000363:277573..284988-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020709 ID=TCONS_00020709|Name=TCONS_00020709|organism=Clytia hemisphaerica|type=transcript|length=7416bp|location=Sequence derived from alignment at sc0000363:277573..284988- (Clytia hemisphaerica)
TATAATTGTATATTAAATATTATGTAATTTGATTTTGATACATGTTGTTG
ATTATGTTTCTGTCTTTTTTTTCAGATTCCATATCCTAGTAAATTCTAGT
AAAAGGAATATTATTGAATAATAAAGTTATATATATTTTACAAAATAATT
TGCTACAAGAATGTATTCATGTTAAACAAGATTACAGTGTAATTGAAGCG
GAATTTCTGTCAGGTGGCAAAGTTATACTTGATCAATGGGGCATAGTCAC
AGCACATTTCATCAAACCAGCAATGAAGCTCTGAATCTAAACAGACCTAT
GTCAACAACCTCGGGAAAAAGTAAAGATTTGCCACCAAACCTGGATAGAT
TTAATGATTTGACACAACTACCTCCTGAAGTTGCTGTACAAATTCTTTCA
AATTTGAATGCCACTGATTTGTGTTTGGCTTCTTGTGTTTGGAAGGATTT
GGCAGAAAATGAATTGCTTTGGAAAAAGTAAGTTTTAATATTAGAATCTT
TTTATTTTTTATTTTTTAAATGAAAAGATTGAAAATGGTTTCTTTGAAAA
TTTGTTTAGAAAATGTTTTACGCAACTGATATTTATGGAAAAACTTTGTC
TTGATCATTGTGCATCATTTGAAAGAGAAAAAGGGATTTGAAAATCTTGA
GAGAATTCCAATTGAGACACAAAATATAATTTATTACCCTTTTTTCAGGC
TTTGCTTTTCCAAATGGGGATATACAAGCATTTATGGCAATTTGAAGTAT
TCTCATATTTCAATCAAGCTTAAGGTTTGATTAATTTTTTTGTATATATT
TTAAATTTTCAATCAATACAGGCCAATTTCCAAGGTCTTAAGGTTCCACC
GTTTTTATCAAAAGATTCTAGAATATGTAGGTTCGAAAAATGTAGGGAGG
TCTGGGAGCACTGTTAACCCTGATCTGGTCCAAGGCAGAGTCATAGTGGA
AGTGTAGGGAGTGGTAGAATTAAGTGCTAAATTATTGAATACTTGATTGA
AGAGTTTCTTTACCTCTTTACCTTTTTCCACAGCCAATTTTTTTTCTTGA
AGATTCAACCTGATTCAATATAACAACTCAATTCAAGATTGAGTGACCCG
GTAGCAGAAAATCCCTGGAAGTTTGCCTGCAATTAACGGATCTTGGCTTC
ATTAAAACTAAGCCTTTTGGTTCACACACTCTTTAAATAAAATTTGACAA
TTTATTATTTTCTTTGAATCATATTTTTTTCTTTTTTTTTAGAAACCAAT
TTTCAAGAACCTATACTTATCATTAGATGAAGCTACTCTTATATTTGGAT
TCCGCCCTTATCAGGTACTAAATTACATCCTGAAATTTTAATGAATTTTT
AGTTTTTCTTCTTACAAATGATGAAGCAAGTTTTTCTGTCTTTATCCCAT
AGACTAAATACCGTCCTTATTAGATTTGCATCCTAGTAACAGATAACAAG
CCTTGAGAGAAGAAGTTTCATAAAATTGGACTCTCTTTTTTGACATTTCG
TCCAGTCGTACCAAAGCAAATTTCCGTACTGGATATAACAGAGTGCTTCT
TTAAATTGAAGCTTCATATTATTCTGTTTTCCAGGGTATAAAATATCTGA
CAGACCATAACATTATTGAAGAAGAAACGGAAGAAGTTGCTAAATTCATA
CATCACACATCTTCACTATCCAATAAATCTCTCACCAAGTATCTCAAAGA
CAAGTGTGTTTCCTTATTCTTTCAGAGATTCATAATGAACACCGAAGGAA
AATTATTCAGAACACTGTATTTTGCTTGAATTATCTTTTCTACTTGCTTT
ACTCTGGACATTCCTCTTGGTATTTTTGAAAAAGATTGTATTTTGTGGGC
TTTGTTTCACAGAAAAATGAATTCNTTGAAAATGGTTTCTTTGAAAATAG
ACGATATCGGCTTTGCCAAATTCTCCCCGAATGATTACCTATGATGCATT
GCGCAAAAAAATTCACGGACGATAACCCTAACCCTAACAATGCATCATGG
GTAATCATTCGGGGAGAATTCGGAAAGCCGATATCGTCTATTTGTTTAGA
AAATGTTTTACGCAACTGATATTTATGGAAAAACTTTGTCTTGATCATTG
TGCAATTTGAAAGAGAAAAAGGTAAAAATGGATTTGAAAATCTTGAAAGA
ATTCCAATTGAGACAATTTATTACCATTTTTTCAGGCTTTGCTTTTCCAA
ATGGGGATATACAAGCATTTATGGCAATTTGAAGTATTCTCATATTTCAA
TCAAGCTTAAGGTTTGATTAATTTTTTTGTATATATTTTAAATTTTCAAT
CAATACAGGCCAATTTCCAAGGTCTTAAGGTTCCACCGTTTTTATCAAAA
GATTCTAGAATATGTAGGTTCGAAAAATGTAGGGAGGTCTGGGAGCACTG
TTAACCCTGATCTGGTCCAAGGCAGAGTCATAGTGGAAGTGTAGGGAGTG
GTAGAATTAAGTGCTAAATTATTGAATACTTGATTGAAGAGTTTCTTTAC
CTCTTTACCTTTTTCCACAGCCAATTTTTTTTCTTGAAGATTCAACCTGA
TTCAATATAACAACTCAATTCAAGATTGAGTGACCCGGTAGCAGAAAATC
CCTGGAAGTTTGCCTGCAATTAACGGATCTTGGCTTCATTAAAACTAAGC
CTTTTGGTTCACACACTCTTTAAATAAAATTTGACAATTTATTATTTTCT
TTGAATCATATTTTTTTCTTTTTTTTTAGAAACCAATTTTCAAGAACCTA
TACTTATCATTAGATGAAGCTACTCTTATATTTGGATTCCGCCCTTATCA
GGTACTAAATTACATCCTGAAATTTTAATGAATTTTTAGTTTTTCTTCTT
ACAAATGATGAAGCAAGTTTTTCTGTCTTTATCCCATAGACTAAATACCG
TCCTTATTAGATTTGCATCCTAGTAACAGATAACAAGCCTTGAGAGAAGA
AGTTTCATAAAATTGGACTCTCTTTTTTGACATTTCGTCCAGTCGTACCA
AAGCAAATTTCCGTACTGGATATAACAGAGTGCTTCTTTAAATTGAAGCT
TCATATTATTCTGTTTTCCAGGGTATAAAATATCTGACAGACCATAACAT
TATTGAAGAAGAAACGGAAGAAGTTGCTAAATTCATACATCACACATCTT
CACTATCCAATAAATCTCTCACCAAGTATCTCAAAGACAAGTGTGTTTCC
TTATTCTTTCAGAGATTCATAATGAACACCGAAGGAAAATTATTCAGAAC
ACTGTATTTTGCTTGAATTATCTTTTCTACTTGCTTTACTCTGGACATTC
CTCTTGGTATTTTTGAAAAAGATTGTATTTTGTGGGCTTTGTTTCACAGA
AAAATGAATTCNTTCCAAGGTCTTAAGGTTCCACCGTTTTTATCAAAAGA
TTCTAGAATATGTAGGTTCGAAAAATGTAGGGAGGTCTGGGAGCACTGTT
AACCCTGATCTGGTCCAAGGCAGAGTCATAGTGGAAGTGTAGGGAGTGGT
AGAATTAAGTGCTAAATTATTGAATACTTGATTGAAGAGTTTCTTTACCT
CTTTACCTTTTTCCACAGCCAATTTTTTTTCTTGAAGATTCAACCTGATT
CAATATAACAACTCAATTCAAGATTGAGTGACCCGGTAGCAGAAAATCCC
TAGAAGTTTGCCTGCAATTAACGGATCTTGGCTTCATTAAAACTAAGCCT
TTTGGTTCACACACTCTTTAAATAAAATTTGACAATTTATTGTTTTCTTT
GAATCATATTTTTTTCTTTTTTTTTAGAAACCAATTTTCAAGAACCTATA
CTTATCATTAGATGAAGCTACTCTTATATTTGGATTCCGCCCTCATCAGG
TACTAAATTACATCCTGAAATTTTAATGAATTTTTAGTTTTTCTTCTTAC
AATAATGATGAAGCAAGTTTTTCTGTCTTTATCCCATAGACTAAATACCG
TCCTTATTAGATTTGCATCCTAGTAACAGATAACAAGCCTTGAGAGAAGA
AGTTTCATAAAATTGGACTCTCTTTTTTGACATTTCGTCCAGTCGTACCA
AAGCAAATTTCCGTACTGGATATAACAGAGTGCTTCTTTAAATTGAAGCT
TCATATTATTCTGTTTTCCAGGGTATAAAATATCTGACAGACCATAACAT
TATTGAAGAAGAAACGGAAGAAGTTGCTAAATTCATACATCACACATCTT
CACTATCCAATAAATCTCTCACCAAGTATCTCAAAGACAAGTGTGTTTCC
TTATTCTTTCAGAGATTCATAATGAACACCGAAGGAAAATTATTCAGAAC
ACTGTATTTTGCTTGAATTATCTTTTCTACTTGCTTTACTCTGGACATTC
CTCTTGGTATTTTTGAAAAAGATTGTATTTTGTGGGCTTTGTTTCACAGA
AAAATGAATTCACTTTCAGTTTTCTCATACCACTTCTTATTTCAAAAAAA
TTACTGATTGTCCTTAGAAAAAATCAAGACCAGTACCTATATTCAAGGAC
TTGAAGTGATTTCTCATAGCTCTTCTTCTTCCCTTTCAGGAGAGAAGTGT
TGGATCTTTTAGTCATGTATATGAATTTTACTGGTTTTACCATATGTGAC
GGGCTTAGGTAAAGTTTGTTTTTGGACCTACCCCGGTGGAGGTCCTATAA
ATTAACCTGTGTTTGTTCGTCCGTCCGTTCGTCCGTTCGTCCGTTCGTTC
GTCTGTTACCAACTTTTCTCAGGATTGAATCATAGGAATCTTTTGATTTT
TGGTACAAAGGTGCAAAATGGTGATGGCCAAAATGTGACGGAGCCCGATT
TTCGAAAAAAAAAAATTTTGGGGCCAATTTGGGCAAAAAAACGGATGTGA
ATCCGAATGTGAAAAATTGGATCATTAATTTTTTCAGATTTTTTGTACGA
AAGTAGGGTACCATCATAGGTAAAAGATGGTTCAAGCAGATTTTTGCAAA
AAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGA
AATTTTGGTTTCTAAACGTTTTTTTTATAAGAAACAAACGACTAATTTTG
AGAGATCGTCACTATTTGTGTTCTGAATGATTGTTTAACGGTCATGTAGG
TAGATATCAATTATATTTGTTAAATGCATAACCAGGTAGGTCCATAAAAG
TATCACTTGTTTGTCTTGTATCCAAGATCAAGCACTTTGAAAATATTTTG
ACACTATCCACATCTCAAATATATAAACTCCAGAGCTACCTTTGAAATTT
CTATGGAAGGTAGAGTCCTAGAGTAATAATTTTCAATCTTTTTTTTTCTG
ACAGGAAATTTTTCAAGAAAATTCACCCACCAGAGGAACGAGGCAATTTC
TTAGATGTCTTGATAGAGAAATTTTCACATCGATTCATTGAATGCAATCC
CACGTCAGATCTCAACCAAGGTAAAAAAGGAGAAAGTTTTGATTAAAATT
TATTTCTTACAGGGGAAATTTTATTTAAAATTCTTTTGCTTCTATCCCTA
TCTTAAAACATAATGCAATAAACTTGAAATGTCAGTCAGTTTTTAAACTC
TTAAATCTTCTAATCTTGCAACTCTACATGTGCAAAACATTCTGACACCT
TTCTTTAGAGATAGGATAGATAATAGGTCAGAATCGCTGATTGACAAAAG
ATTTTTTCCTCTCTGAACACTAAGCAAAGAAATATAGTTTCAATCAGCGA
TTCCAACTTTCTTATTATTCCAAACTCTGAAAAGGTTGTCGAAATTAGAT
GATTTAGTCGACATCAGACCAGCTTACGGTAGATATTCATTGCATATTCA
ACCTTTGACCTGAATGTTTATTTAATAACATGATTATATTTTGTGTGTTA
ATCATACTAAGCAATATTATCTTGTCATAATCTCTTTTATTTTAGAGCAT
ATATCTGTGTTGTGTTATTCATTGATGTTATTAAGTGTCGACTTGTACAG
CCCACATGTTCGAAACAAAATGTCGAAACGTGAATATATTAAGAACAATC
ATCAAGTTTTAAATGGTGAAGTTAGTCGAGAGACACTTGGTGATTTTTAC
GACGATGTTTATTTAAATGGACACATAGTGCCTTCTCATTGTAAACAAGT
CAATAAACGGAAAGGTGGCAAACGACAGCATTGCTTTCCATTTTATAGAC
CCTATGGTGCCATCTTTGAGATAAAACCGATAGAACTGAAGCTGTTGAGT
TGTAACTGCTGATAGTTTCGGGTTTTAGATTGTATAGATATTTTTTGATA
CAGGGATGAAATATGTGGTCGGAATTACTGATCTAACAACATTTTATGCC
TCTAAAATGCTCCCTTCACATGCTTTTTATAAGGGAAATTTTATAAGAAC
GCGAGGCTTAGTTAGTGTCAAAGTCCTAGAATAAATGAAAACAAAATAAA
AAAGAGAACTTTTCGAAAAGTTTTAAGAGCATATCAGACCATTCAATTTT
ATATCCATACAGAGGGTGGATGAACATTTTCAGGGGGTAATCCGAGAGGA
ATTATCAGGGGGTCTAATGGAGTGATTTTTTCCACAGGGTAAAAAGTTAT
TCTAAAGTTTTCAGGGGGTAAGAGACTGATTTTAGTTAGTCCCGTCATTA
TAAGGTATGTAAGAAATTTTCTAAATTTTTTTTTGCAAATTTTGCCATTT
TCCAGGGGTACCCATACATTTCCAAGAATTCTTTTTTATAATTGAAAAGG
TTCGTCCACCCCAATGTACGGATTTTTTTAACGGGACAGCCATTTGTTAT
GAAAAACTTTCCTGTTCCGATTGCTCAACTTCTTGGTCCGCAACCGATTT
TCGTTGAATTTCAAATTTTCTTCTTTATCTTGAGCTTATTATTGCAACTT
TCAATTTTTATCAAGAGACAAATTTGTTTTAGTTCGAAAATTATATTTCA
TTTGTTTTTTCTTTCAATGAAATTAAATATGATTGTTAAATAGATTTTAA
TAGTAGTAAATATTGTAATTTATAGTTTTTCTTGTTGTCACTTATACATA
AATTATTTTTTTCTTTTTCAACAGCTATTGTTTATAAAACCGAAATGCAA
ATTCACTTGCAAAGTAAGAAAACATCGTCGTATTTTGTTTAATGTAAAAC
TGAGCCCACTGGCGCATCCAAATTATCTTATTATAAATATTTTCAACAAT
ACCCTAACAGGAAAAT

Coding sequence (CDS) from alignment at sc0000363:277573..284988-

>TCONS_00020709 ID=TCONS_00020709|Name=TCONS_00020709|organism=Clytia hemisphaerica|type=CDS|length=7077bp|location=Sequence derived from alignment at sc0000363:277573..284988- (Clytia hemisphaerica)
AGCATATATCTGTGTTGTGTTATTCATTGATGTTATTAAGTGTCGACTTG
TACAGCCCACATGTTCGAAACAAAATGTCGAAACGTGAATATATTAAGAA
CAATCATCAAGTTTTAAATGGTGAAGTTAGTCGAGAGACACTTGGTGATT
TTTACGACGATGTTTATTTAAATGGACACATAGTGCCTTCTCATTGTAAA
CAAGTCAATAAACGGAAAGGTGGCAAACGACAGCATTGCTTTCCATTTTA
TAGACCCTATGGTGCCATCTTTGAGATAAAACCGATAGAACTGAAGCTGT
TGAGTTGTAACTGCTGAGAAATTTTTCAAGAAAATTCACCCACCAGAGGA
ACGAGGCAATTTCTTAGATGTCTTGATAGAGAAATTTTCACATCGATTCA
TTGAATGCAATCCCACGTCAGATCTCAACCAAGGAGAGAAGTGTTGGATC
TTTTAGTCATGTATATGAATTTTACTGGTTTTACCATATGTGACGGGCTT
AGGGTATAAAATATCTGACAGACCATAACATTATTGAAGAAGAAACGGAA
GAAGTTGCTAAATTCATACATCACACATCTTCACTATCCAATAAATCTCT
CACCAAGTATCTCAAAGACAAAAACCAATTTTCAAGAACCTATACTTATC
ATTAGATGAAGCTACTCTTATATTTGGATTCCGCCCTCATCAGGCTTTGC
TTTTCCAAATGGGGATATACAAGCATTTATGGCAATTTGAAGTATTCTCA
TATTTCAATCAAGCTTAAGATGGGGCATAGTCACAGCACATTTCATCAAA
CCAGCAATGAAGCTCTGAATCTAAACAGACCTATGTCAACAACCTCGGGA
AAAAGTAAAGATTTGCCACCAAACCTGGATAGATTTAATGATTTGACACA
ACTACCTCCTGAAGTTGCTGTACAAATTCTTTCAAATTTGAATGCCACTG
ATTTGTGTTTGGCTTCTTGTGTTTGGAAGGATTTGGCAGAAAATGAATTG
CTTTGGAAAAAAGCATATATCTGTGTTGTGTTATTCATTGATGTTATTAA
GTGTCGACTTGTACAGCCCACATGTTCGAAACAAAATGTCGAAACGTGAA
TATATTAAGAACAATCATCAAGTTTTAAATGGTGAAGTTAGTCGAGAGAC
ACTTGGTGATTTTTACGACGATGTTTATTTAAATGGACACATAGTGCCTT
CTCATTGTAAACAAGTCAATAAACGGAAAGGTGGCAAACGACAGCATTGC
TTTCCATTTTATAGACCCTATGGTGCCATCTTTGAGATAAAACCGATAGA
ACTGAAGCTGTTGAGTTGTAACTGCTGAGAAATTTTTCAAGAAAATTCAC
CCACCAGAGGAACGAGGCAATTTCTTAGATGTCTTGATAGAGAAATTTTC
ACATCGATTCATTGAATGCAATCCCACGTCAGATCTCAACCAAGGAGAGA
AGTGTTGGATCTTTTAGTCATGTATATGAATTTTACTGGTTTTACCATAT
GTGACGGGCTTAGGGTATAAAATATCTGACAGACCATAACATTATTGAAG
AAGAAACGGAAGAAGTTGCTAAATTCATACATCACACATCTTCACTATCC
AATAAATCTCTCACCAAGTATCTCAAAGACAAAAACCAATTTTCAAGAAC
CTATACTTATCATTAGATGAAGCTACTCTTATATTTGGATTCCGCCCTCA
TCAGGCTTTGCTTTTCCAAATGGGGATATACAAGCATTTATGGCAATTTG
AAGTATTCTCATATTTCAATCAAGCTTAAGATGGGGCATAGTCACAGCAC
ATTTCATCAAACCAGCAATGAAGCTCTGAATCTAAACAGACCTATGTCAA
CAACCTCGGGAAAAAGTAAAGATTTGCCACCAAACCTGGATAGATTTAAT
GATTTGACACAACTACCTCCTGAAGTTGCTGTACAAATTCTTTCAAATTT
GAATGCCACTGATTTGTGTTTGGCTTCTTGTGTTTGGAAGGATTTGGCAG
AAAATGAATTGCTTTGGAAAAAAGCATATATCTGTGTTGTGTTATTCATT
GATGTTATTAAGTGTCGACTTGTACAGCCCACATGTTCGAAACAAAATGT
CGAAACGTGAATATATTAAGAACAATCATCAAGTTTTAAATGGTGAAGTT
AGTCGAGAGACACTTGGTGATTTTTACGACGATGTTTATTTAAATGGACA
CATAGTGCCTTCTCATTGTAAACAAGTCAATAAACGGAAAGGTGGCAAAC
GACAGCATTGCTTTCCATTTTATAGACCCTATGGTGCCATCTTTGAGATA
AAACCGATAGAACTGAAGCTGTTGAGTTGTAACTGCTGAGAAATTTTTCA
AGAAAATTCACCCACCAGAGGAACGAGGCAATTTCTTAGATGTCTTGATA
GAGAAATTTTCACATCGATTCATTGAATGCAATCCCACGTCAGATCTCAA
CCAAGGAGAGAAGTGTTGGATCTTTTAGTCATGTATATGAATTTTACTGG
TTTTACCATATGTGACGGGCTTAGGGTATAAAATATCTGACAGACCATAA
CATTATTGAAGAAGAAACGGAAGAAGTTGCTAAATTCATACATCACACAT
CTTCACTATCCAATAAATCTCTCACCAAGTATCTCAAAGACAAAAACCAA
TTTTCAAGAACCTATACTTATCATTAGATGAAGCTACTCTTATATTTGGA
TTCCGCCCTCATCAGGCTTTGCTTTTCCAAATGGGGATATACAAGCATTT
ATGGCAATTTGAAGTATTCTCATATTTCAATCAAGCTTAAGATGGGGCAT
AGTCACAGCACATTTCATCAAACCAGCAATGAAGCTCTGAATCTAAACAG
ACCTATGTCAACAACCTCGGGAAAAAGTAAAGATTTGCCACCAAACCTGG
ATAGATTTAATGATTTGACACAACTACCTCCTGAAGTTGCTGTACAAATT
CTTTCAAATTTGAATGCCACTGATTTGTGTTTGGCTTCTTGTGTTTGGAA
GGATTTGGCAGAAAATGAATTGCTTTGGAAAAAAGCATATATCTGTGTTG
TGTTATTCATTGATGTTATTAAGTGTCGACTTGTACAGCCCACATGTTCG
AAACAAAATGTCGAAACGTGAATATATTAAGAACAATCATCAAGTTTTAA
ATGGTGAAGTTAGTCGAGAGACACTTGGTGATTTTTACGACGATGTTTAT
TTAAATGGACACATAGTGCCTTCTCATTGTAAACAAGTCAATAAACGGAA
AGGTGGCAAACGACAGCATTGCTTTCCATTTTATAGACCCTATGGTGCCA
TCTTTGAGATAAAACCGATAGAACTGAAGCTGTTGAGTTGTAACTGCTGA
GAAATTTTTCAAGAAAATTCACCCACCAGAGGAACGAGGCAATTTCTTAG
ATGTCTTGATAGAGAAATTTTCACATCGATTCATTGAATGCAATCCCACG
TCAGATCTCAACCAAGGAGAGAAGTGTTGGATCTTTTAGTCATGTATATG
AATTTTACTGGTTTTACCATATGTGACGGGCTTAGGGTATAAAATATCTG
ACAGACCATAACATTATTGAAGAAGAAACGGAAGAAGTTGCTAAATTCAT
ACATCACACATCTTCACTATCCAATAAATCTCTCACCAAGTATCTCAAAG
ACAAAAACCAATTTTCAAGAACCTATACTTATCATTAGATGAAGCTACTC
TTATATTTGGATTCCGCCCTCATCAGGCTTTGCTTTTCCAAATGGGGATA
TACAAGCATTTATGGCAATTTGAAGTATTCTCATATTTCAATCAAGCTTA
AGATGGGGCATAGTCACAGCACATTTCATCAAACCAGCAATGAAGCTCTG
AATCTAAACAGACCTATGTCAACAACCTCGGGAAAAAGTAAAGATTTGCC
ACCAAACCTGGATAGATTTAATGATTTGACACAACTACCTCCTGAAGTTG
CTGTACAAATTCTTTCAAATTTGAATGCCACTGATTTGTGTTTGGCTTCT
TGTGTTTGGAAGGATTTGGCAGAAAATGAATTGCTTTGGAAAAAAGCATA
TATCTGTGTTGTGTTATTCATTGATGTTATTAAGTGTCGACTTGTACAGC
CCACATGTTCGAAACAAAATGTCGAAACGTGAATATATTAAGAACAATCA
TCAAGTTTTAAATGGTGAAGTTAGTCGAGAGACACTTGGTGATTTTTACG
ACGATGTTTATTTAAATGGACACATAGTGCCTTCTCATTGTAAACAAGTC
AATAAACGGAAAGGTGGCAAACGACAGCATTGCTTTCCATTTTATAGACC
CTATGGTGCCATCTTTGAGATAAAACCGATAGAACTGAAGCTGTTGAGTT
GTAACTGCTGAGAAATTTTTCAAGAAAATTCACCCACCAGAGGAACGAGG
CAATTTCTTAGATGTCTTGATAGAGAAATTTTCACATCGATTCATTGAAT
GCAATCCCACGTCAGATCTCAACCAAGGAGAGAAGTGTTGGATCTTTTAG
TCATGTATATGAATTTTACTGGTTTTACCATATGTGACGGGCTTAGGGTA
TAAAATATCTGACAGACCATAACATTATTGAAGAAGAAACGGAAGAAGTT
GCTAAATTCATACATCACACATCTTCACTATCCAATAAATCTCTCACCAA
GTATCTCAAAGACAAAAACCAATTTTCAAGAACCTATACTTATCATTAGA
TGAAGCTACTCTTATATTTGGATTCCGCCCTCATCAGGCTTTGCTTTTCC
AAATGGGGATATACAAGCATTTATGGCAATTTGAAGTATTCTCATATTTC
AATCAAGCTTAAGATGGGGCATAGTCACAGCACATTTCATCAAACCAGCA
ATGAAGCTCTGAATCTAAACAGACCTATGTCAACAACCTCGGGAAAAAGT
AAAGATTTGCCACCAAACCTGGATAGATTTAATGATTTGACACAACTACC
TCCTGAAGTTGCTGTACAAATTCTTTCAAATTTGAATGCCACTGATTTGT
GTTTGGCTTCTTGTGTTTGGAAGGATTTGGCAGAAAATGAATTGCTTTGG
AAAAAAGCATATATCTGTGTTGTGTTATTCATTGATGTTATTAAGTGTCG
ACTTGTACAGCCCACATGTTCGAAACAAAATGTCGAAACGTGAATATATT
AAGAACAATCATCAAGTTTTAAATGGTGAAGTTAGTCGAGAGACACTTGG
TGATTTTTACGACGATGTTTATTTAAATGGACACATAGTGCCTTCTCATT
GTAAACAAGTCAATAAACGGAAAGGTGGCAAACGACAGCATTGCTTTCCA
TTTTATAGACCCTATGGTGCCATCTTTGAGATAAAACCGATAGAACTGAA
GCTGTTGAGTTGTAACTGCTGAGAAATTTTTCAAGAAAATTCACCCACCA
GAGGAACGAGGCAATTTCTTAGATGTCTTGATAGAGAAATTTTCACATCG
ATTCATTGAATGCAATCCCACGTCAGATCTCAACCAAGGAGAGAAGTGTT
GGATCTTTTAGTCATGTATATGAATTTTACTGGTTTTACCATATGTGACG
GGCTTAGGGTATAAAATATCTGACAGACCATAACATTATTGAAGAAGAAA
CGGAAGAAGTTGCTAAATTCATACATCACACATCTTCACTATCCAATAAA
TCTCTCACCAAGTATCTCAAAGACAAAAACCAATTTTCAAGAACCTATAC
TTATCATTAGATGAAGCTACTCTTATATTTGGATTCCGCCCTCATCAGGC
TTTGCTTTTCCAAATGGGGATATACAAGCATTTATGGCAATTTGAAGTAT
TCTCATATTTCAATCAAGCTTAAGATGGGGCATAGTCACAGCACATTTCA
TCAAACCAGCAATGAAGCTCTGAATCTAAACAGACCTATGTCAACAACCT
CGGGAAAAAGTAAAGATTTGCCACCAAACCTGGATAGATTTAATGATTTG
ACACAACTACCTCCTGAAGTTGCTGTACAAATTCTTTCAAATTTGAATGC
CACTGATTTGTGTTTGGCTTCTTGTGTTTGGAAGGATTTGGCAGAAAATG
AATTGCTTTGGAAAAAAGCATATATCTGTGTTGTGTTATTCATTGATGTT
ATTAAGTGTCGACTTGTACAGCCCACATGTTCGAAACAAAATGTCGAAAC
GTGAATATATTAAGAACAATCATCAAGTTTTAAATGGTGAAGTTAGTCGA
GAGACACTTGGTGATTTTTACGACGATGTTTATTTAAATGGACACATAGT
GCCTTCTCATTGTAAACAAGTCAATAAACGGAAAGGTGGCAAACGACAGC
ATTGCTTTCCATTTTATAGACCCTATGGTGCCATCTTTGAGATAAAACCG
ATAGAACTGAAGCTGTTGAGTTGTAACTGCTGAGAAATTTTTCAAGAAAA
TTCACCCACCAGAGGAACGAGGCAATTTCTTAGATGTCTTGATAGAGAAA
TTTTCACATCGATTCATTGAATGCAATCCCACGTCAGATCTCAACCAAGG
AGAGAAGTGTTGGATCTTTTAGTCATGTATATGAATTTTACTGGTTTTAC
CATATGTGACGGGCTTAGGGTATAAAATATCTGACAGACCATAACATTAT
TGAAGAAGAAACGGAAGAAGTTGCTAAATTCATACATCACACATCTTCAC
TATCCAATAAATCTCTCACCAAGTATCTCAAAGACAAAAACCAATTTTCA
AGAACCTATACTTATCATTAGATGAAGCTACTCTTATATTTGGATTCCGC
CCTCATCAGGCTTTGCTTTTCCAAATGGGGATATACAAGCATTTATGGCA
ATTTGAAGTATTCTCATATTTCAATCAAGCTTAAGATGGGGCATAGTCAC
AGCACATTTCATCAAACCAGCAATGAAGCTCTGAATCTAAACAGACCTAT
GTCAACAACCTCGGGAAAAAGTAAAGATTTGCCACCAAACCTGGATAGAT
TTAATGATTTGACACAACTACCTCCTGAAGTTGCTGTACAAATTCTTTCA
AATTTGAATGCCACTGATTTGTGTTTGGCTTCTTGTGTTTGGAAGGATTT
GGCAGAAAATGAATTGCTTTGGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011613XLOC_011613Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020709-proteinTCONS_00020709-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020709-exon-sc0000363-1575043694:284512..284988TCONS_00020709-exon-sc0000363-1575043694:284512..284988Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1575043694:282728..282803TCONS_00020709-exon-sc0000363-1575043694:282728..282803Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1575043694:281140..281211TCONS_00020709-exon-sc0000363-1575043694:281140..281211Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1575043694:280749..280867TCONS_00020709-exon-sc0000363-1575043694:280749..280867Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1575043694:280381..280449TCONS_00020709-exon-sc0000363-1575043694:280381..280449Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1575043694:279319..279434TCONS_00020709-exon-sc0000363-1575043694:279319..279434Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1575043694:277573..278843TCONS_00020709-exon-sc0000363-1575043694:277573..278843Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1510915933:284512..284988TCONS_00020709-exon-sc0000363-1510915933:284512..284988Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1510915933:282728..282803TCONS_00020709-exon-sc0000363-1510915933:282728..282803Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1510915933:281140..281211TCONS_00020709-exon-sc0000363-1510915933:281140..281211Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1510915933:280749..280867TCONS_00020709-exon-sc0000363-1510915933:280749..280867Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1510915933:280381..280449TCONS_00020709-exon-sc0000363-1510915933:280381..280449Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1510915933:279319..279434TCONS_00020709-exon-sc0000363-1510915933:279319..279434Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1510915933:277573..278843TCONS_00020709-exon-sc0000363-1510915933:277573..278843Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1491911889:284512..284988TCONS_00020709-exon-sc0000363-1491911889:284512..284988Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1491911889:282728..282803TCONS_00020709-exon-sc0000363-1491911889:282728..282803Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1491911889:281140..281211TCONS_00020709-exon-sc0000363-1491911889:281140..281211Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1491911889:280749..280867TCONS_00020709-exon-sc0000363-1491911889:280749..280867Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1491911889:280381..280449TCONS_00020709-exon-sc0000363-1491911889:280381..280449Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1491911889:279319..279434TCONS_00020709-exon-sc0000363-1491911889:279319..279434Clytia hemisphaericaexon
TCONS_00020709-exon-sc0000363-1491911889:277573..278843TCONS_00020709-exon-sc0000363-1491911889:277573..278843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:277573..284988 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.72243	7.99426	2.25057	0.952145	7.76835	5.33797	6.74804	7.31354	5.56823	5.39436	5.4059	3.86405	3.73721	3.81382	3.94123	4.00694	5.02742	4.93546	4.94549	6.7349	7.15748	6.93167	10.3358	11.5808	11.7733	13.0638	6.77699	5.40872	8.92017	8.51455
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000904Sec7_dom
IPR023394Sec7_alpha_orthog
IPR001810F-box_dom
Vocabulary: Biological Process
TermDefinition
GO:0032012regulation of ARF protein signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005086ARF guanyl-nucleotide exchange factor activity
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032012 regulation of ARF protein signal transduction
molecular_function GO:0005086 ARF guanyl-nucleotide exchange factor activity
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00020709 vs. Swiss-Prot (Human)
Match: FBX8 (F-box only protein 8 OS=Homo sapiens GN=FBXO8 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 4.978e-73
Identity = 126/263 (47.91%), Postives = 170/263 (64.64%), Query Frame = 2 
Query:  350 FNDLTQLPPEVAVQILSNLNATDLCLASCVWKDLAENELLWKKLCFSKWGYTSIYGN---LKYSHISIKLKKPIFKNLYLSLDEATLIFGFRPHQGIKYLTDHNIIEEETEEVAKFIHHTSSLSNKSLTKYLKDKREVLDLLVMYMNFTGFTICDGLRKFFKKIHPPEERGNFLDVLIEKFSHRFIECNP----TSDLNQEHISVLCYSLMLLSVDLYSPHVRNKMSKREYIKNNHQVLNGEVSRETLGDFYDDVYLNGHIVP 1117
            F +L  LPPE++  ILS LNATDLCLASCVW+DLA +ELLW+ LC S WG+ SIY     L +S          F+ LY+ LDE +L F   P +G+ Y     I+++  +E+AKFI  T +L+ K L  YL ++R+VLD LV   NF    + + LR+FF+ IH PEERG +L+ LI KFSHRF  CNP       L+ + + VLCYSL+LLS+DL SPHV+NKMSKRE+I+N  +     +S + +G  YD++YL GH+  
Sbjct:   68 FINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFS----------FRKLYMQLDEGSLTFNANPDEGVNYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQN-ISEDFVGHLYDNIYLIGHVAA 319
The following BLAST results are available for this feature:
BLAST of TCONS_00020709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX84.978e-7347.91F-box only protein 8 OS=Homo sapiens GN=FBXO8 PE=2... [more]
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