TCONS_00020709-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020709-protein
Unique NameTCONS_00020709-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020709-protein ID=TCONS_00020709-protein|Name=TCONS_00020709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MGHSHSTFHQTSNEALNLNRPMSTTSGKSKDLPPNLDRFNDLTQLPPEVA
VQILSNLNATDLCLASCVWKDLAENELLWKKLCFSKWGYTSIYGNLKYSH
ISIKLKKPIFKNLYLSLDEATLIFGFRPHQGIKYLTDHNIIEEETEEVAK
FIHHTSSLSNKSLTKYLKDKREVLDLLVMYMNFTGFTICDGLRKFFKKIH
PPEERGNFLDVLIEKFSHRFIECNPTSDLNQEHISVLCYSLMLLSVDLYS
PHVRNKMSKREYIKNNHQVLNGEVSRETLGDFYDDVYLNGHIVPSHCKQV
NKRKGGKRQHCFPFYRPYGAIFEIKPIELKLLSCNC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011613XLOC_011613Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020709TCONS_00020709Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000904Sec7_dom
IPR023394Sec7_alpha_orthog
IPR001810F-box_dom
Vocabulary: Biological Process
TermDefinition
GO:0032012regulation of ARF protein signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005086ARF guanyl-nucleotide exchange factor activity
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032012 regulation of ARF protein signal transduction
molecular_function GO:0005086 ARF guanyl-nucleotide exchange factor activity
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000904Sec7 domainSMARTSM00222sec7_5coord: 110..291
e-value: 1.3E-35
score: 134.3
IPR000904Sec7 domainPFAMPF01369Sec7coord: 118..286
e-value: 3.5E-33
score: 114.8
IPR000904Sec7 domainPROSITEPS50190SEC7coord: 117..289
score: 23.649
IPR000904Sec7 domainSUPERFAMILY48425Sec7 domaincoord: 110..289
NoneNo IPR availableGENE3D1.10.220.20coord: 110..182
e-value: 5.8E-11
score: 42.0
NoneNo IPR availableGENE3D1.20.1280.50coord: 38..82
e-value: 3.3E-6
score: 26.5
IPR023394Sec7 domain, alpha orthogonal bundleGENE3D1.10.1000.11coord: 183..299
e-value: 6.5E-23
score: 80.3
IPR001810F-box domainPFAMPF12937F-box-likecoord: 43..85
e-value: 4.4E-8
score: 32.8
IPR001810F-box domainPROSITEPS50181FBOXcoord: 39..82
score: 10.928
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 30..93

Blast
[Close]
BLAST of TCONS_00020709-protein vs. Swiss-Prot (Human)
Match: FBX8 (F-box only protein 8 OS=Homo sapiens GN=FBXO8 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.052e-78
Identity = 126/262 (48.09%), Postives = 170/262 (64.89%), Query Frame = 0 
Query:   39 FNDLTQLPPEVAVQILSNLNATDLCLASCVWKDLAENELLWKKLCFSKWGYTSIYGN---LKYSHISIKLKKPIFKNLYLSLDEATLIFGFRPHQGIKYLTDHNIIEEETEEVAKFIHHTSSLSNKSLTKYLKDKREVLDLLVMYMNFTGFTICDGLRKFFKKIHPPEERGNFLDVLIEKFSHRFIECNP----TSDLNQEHISVLCYSLMLLSVDLYSPHVRNKMSKREYIKNNHQVLNGEVSRETLGDFYDDVYLNGHIV 293
            F +L  LPPE++  ILS LNATDLCLASCVW+DLA +ELLW+ LC S WG+ SIY     L +S          F+ LY+ LDE +L F   P +G+ Y     I+++  +E+AKFI  T +L+ K L  YL ++R+VLD LV   NF    + + LR+FF+ IH PEERG +L+ LI KFSHRF  CNP       L+ + + VLCYSL+LLS+DL SPHV+NKMSKRE+I+N  +     +S + +G  YD++YL GH+ 
Sbjct:   68 FINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFS----------FRKLYMQLDEGSLTFNANPDEGVNYFMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDAVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQN-ISEDFVGHLYDNIYLIGHVA 318
The following BLAST results are available for this feature:
BLAST of TCONS_00020709-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX81.052e-7848.09F-box only protein 8 OS=Homo sapiens GN=FBXO8 PE=2... [more]
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