TCONS_00020697 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020697
Unique Name	TCONS_00020697
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2029

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000363:168904..174360-

transcript sequence

>TCONS_00020697 ID=TCONS_00020697|Name=TCONS_00020697|organism=Clytia hemisphaerica|type=transcript|length=2029bp
caggaatgaaaatataagaaataaaaCATGAGAATATAAattaaaaggaa
taaaaaaatgAGGACAGTGCGCGTATCTTGGAAGAAAGTGGTCCCACTTG
GATTGCTTGCTTTGGTGATCATCTACTTTGTTGGGCCGTCATTTCTACCC
ACTAAAAACACATTGGCATATGagttgaaacaatcaaaattggAACAACG
TGAAAAACCAACTTTTAATGAGGATGGCTCATTggggaattttgaaaaga
aagaagcaTCTCGAAGTGGACCTGGTGAAATGGGAAAACCCCATCGTTTA
AAACCAGAACAAAAGAGTGAGGAAGACAGACTGAAAGgtGTTTACGGTTT
CAACCAGTTGGTTTCTGACGAAATTTCATTGGATCGAAGTGTACCTGACA
TGCGCGAAAAAGAATGTAAACATTGGAATTATCCCAAAGATCTTCCAACG
GCTtctgtcattttcattttccataaCGAGGGATGGAGTACCTTGTTGAG
ATCTGTACATTCCGTTATTAACagAACACCTGCACAGTTTTTACACGAAA
TTGTTTTGGTGGATGACAAATCCGAAATGCAACATTTACACGAACCGTTA
GATGAAGaattaaaaaaacctttttatcaatcgaaagtgaaagtggttcG
CAACAAAGAACGTGAAGGGTTGATCAGAGCCCGAAATAATGGAGCTATAG
CTGCCTCAGGTGAAGTACTTGTCTTTATGGACGCTCACTGCGAAGTGGGG
CCAAACTGGTTACCACCCATATTGGCGCCCATTTATGAGAATCCACGAAC
TCTTTCCGTACCTGTTATTGATGGTATACAGTGGAGTGATTTTTCTATCA
ACCCTGTTTACGCCGAAGGAGCTCATTCAAGAgGTATCTTCGAATGGGGT
ATGTTGTACAAAGAAGGACCTCTACCCGAGAAAGAAGCTAAAAAACGAAG
TCGTCATTCCGAACCTTACAATGCTCCAACACACGCTGGTGGTTTGTTCG
CTATTCGTAGAGATTGGTTCAAAGAGTTGGGATGGTATGATCCAGGTTTA
CTCATTTGGGGAGGAGAGAACTACGAGTTGGCTTTCAAGCTATGGCAATG
TGGAGGACGTTCAGTGTGGGTGCCCTGTTCACGCATTGGTCACGTTTATC
GTGGCCATTCGTGCTCATCGTGTCATTCAGGGGATTTGGGTAAAAAATGG
GGAAATTACCCTCTAGCATTACGTAATTATAAGCGTTTGATCGAAGTTTG
GTTTGATGATAAATATAAGGAATTTTTCTACACGCGTGAACCGTTGGCAC
GATTTATCGATCACGGAGATATTTCTGAACAGTTGGCTTTGAAGAAACGA
ATGAATTGTAAATCTTTCACTTGGTTCATGGAAGAAGTTgcatatgatgt
tttattcaaGTATCCCGAACTTCCTCCGAACAAACACTGGGGTGAAATCA
AGAATATGGAAAACGGTCAATGCATAGACACGTACAGTCGATCACCGCCC
GGGCGGATTGGTATCTCTGGGTGTCATGGTTGGGGCGGAAATCAGCTCAT
TCGTTTGAATAGTCAGGGTCAGTTAGCCTCAGGTGAATGGTGTATCAAGC
ACATGCCGACCACCAATCCAAACGAAAACCACTTCGGAATGGCGTGGTGT
GAACAAGGCTCTGTTGACGGACCCTGGCACTTTGAAGAAAACACAGGGCT
CCTCAAAAATACACACGAAAACAAATGTGTCGCTATTGATCGAAATAATT
TAAAGCTCGTTCTAACTGAGTGTGATAAAAACAATAAACTACATCGCTGG
GATTATCGTCCGCTTAAACCAAAATGGCAcaagaacttttaaaatatagT
TTTTTAGATAGAAAAATGAGCTCACATGGTTGTTGTTGAAAGAcataata
tctttccaatgtttgaatattatttattttttttgaaagaatttcaaaag
tATTCAATATTTTAGTAGTGTTTTAGACGTTTTTTATGTAAGGTGTTGGG
TTTTTAGATAGAGCTTTGTTGCTTTTAAA

Run BLAST on NCBI

transcript from alignment at sc0000363:168904..174360-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020697 ID=TCONS_00020697|Name=TCONS_00020697|organism=Clytia hemisphaerica|type=transcript|length=5457bp|location=Sequence derived from alignment at sc0000363:168904..174360- (Clytia hemisphaerica)
CAGGAATGAAAATATAAGAAATAAAACATGAGAATATAAATTAAAAGGAA
TAAAAAAATGAGGACAGTGCGCGTATCTTGGAAGAAAGTGGTCCCACTTG
GATTGCTTGCTTTGGTGATCATCTACTTTGTTGGGCCGTCATTTCTACCC
ACTAAAAACACATTGGCATATGAGTTGAAACAATCAAAATTGGAACAACG
TGAAAAACCAACTTTTAATGAGGATGGCTCATTGGGGAATTTTGAAAAGA
AAGAAGCATCTCGAAGTGGACCTGGTGAAATGGGAAAACCCCATCGTTTA
AAACCAGAACAAAAGAGTGAGGAAGACAGACTGAAAGGTTAGTGTTATTT
TCAATATTATTGTTTCCCTACCAGGTTCATAACTGGTTAATTAAAGGGAA
CTATTAGGGAGACATATTTATAGTAAACCTCTCAAGCTTTTTAGAAAATT
CCTTTTTATGATCAATTTTAAAGGCTTGCTTGGGGACACGAGAAGTTTTC
TTCGCGTTGGTGCAATGCAACATGCTCCATCCCACCAACCTGAAATTTCT
TTTGATAACATTTGTGTTTCTCTCACTCAACAACCAGCGTGTCTTTTGGG
TATTTCCCTCACTTTTTGTCCCATGAAACAAAACAAAAAACATGAGACAC
GCGCTTTTTTTCTTGTGTTGGTGGGATGGAGCATGTTTCATTGCACCAAC
GCTAAAAAACTTCTCGTGTCCCCAAGCCTTAAGGAAGAAATTTTCGCGGA
AAGAAAATAATGGCAGATTTTGCGGATTTGTCTAAAATTCGTTTTTTTCG
GCCATCCGCTAAATCAAATTCTCGCCAAATTAATTTCTCGCCAAATTAAT
TTTATGTCCGATTTTTCACAATTTACGAAGGCGATCTCAATGTTTTCACC
CTGATTTTGGATCTAAAATTCCGTCATCCGCCAATTAAATTCCCACCAAA
TTAGCTTTTTCCCTGATCCGCCAAATTAAATTCTCCCTATGAGAAAACTT
TTTCAGCCAAACTAAATCCCCGCCAAAATTTCTTCCCTAAAGGTAGAAAG
AAGGCGTTTCTCTTATGCTGACAAAGTAGAATAAACCATAGGATTTCCAA
AAAGTTGAGCTCGCCTTTTCCGGAATGTTCTGTAAACAAATCGTAGGAGA
TGGGTTAAAGTTAAATGATGTCCTTTGATGGCTTATATACTGTATTTGTA
TTATATTTACACAGCACCTCACCCCTCACCCCATGAAAATTGGAAGTCTC
TCTAGATTCGAGGAGCCTAAGACAGCAATGATGAAAATTGCGCTATTATG
GATATTCAAACTCATGAAATTATTTTTCAGGTGTTTACGGTTTCAACCAG
TTGGTTTCTGACGAAATTTCATTGGATCGAAGTGTACCTGACATGCGCGA
AAAAGAATGTAAACATTGGAATTATCCCAAAGATCTTCCAACGGCTTCTG
TCATTTTCATTTTCCATAACGAGGGATGGAGTACCTTGTTGAGATCTGTA
CATTCCGTTATTAACAGGTACACTCTTTTTTTATGAGAACCGGTTACTAC
TTGTTAGAGCTTAAACAGCCCCAAGCTTGTCTTATCTTTTTAGCAATACG
AGTCTAAAATCTTTCTAATCTTGTTCTTATTCTTAGGGCAAAACTGTAGG
TGGTTAAGGTTTCCTTCTTTTTTTCTAATTTGACCTTTCATTAGCTTAAA
ACTCAGTTTTTCAAGATCTTTACTATCTTTCTAAGTATCAATATTAACTG
CTACCCCTGGCCAGTCCCAAATCTGAAGAAAAAAACTAAATACTGTATTA
GGTTTTTGTATTTTTATCGCACATACTGCTCCTGAAGCCTATGTCTACGC
TATATTACTTTCACAGATTCTCAATTTATCTTTTTTTCAACTTCAGAACA
CCTGCACAGTTTTTACACGAAATTGTTTTGGTGGATGACAAATCCGAAAT
GCAACATTTACACGAACCGTTAGATGAAGAATTAAAAAAACCTTTTTATC
AATCGAAAGTGAAAGTGGTTCGCAACAAAGAACGTGAAGGGTTGATCAGA
GCCCGAAATAATGGAGCTATAGCTGCCTCAGGTATTACATGTTTTCTAAG
AATTTAACAGCCTTAGGTTCACTTAAAAACATTGTTTCCTCACTCACAGC
ACATAGAACCTTTTTTATTGAAGCTCACTTTTCTAAACTTCAGTTGAGCT
AGAAATTGAACACACCCTTCTCACAGACCCACTGGGACCCCTTCCCACTG
GAAAAAATGCCCAAAATATCGTCCCCGGTAGAAAATTATCCTCAAATTTT
TGTCCCTACTAAAAATGGTCAAATAGACTTACTATTTTTCCGATCCCCAC
TGAATTTCCTGACTTTAAACAAAAGAATTTAAATCCCCAGTCATAAAAAA
TAGGGGAATATCAATCCCTATCGAGTTTCAGTCCGTTAATTTTAGCCCCA
CTGGCTGAAGAAATCTTACCGGGTCTTTGAGAAGGGGGTGTTATTGAGAT
CTGTCTTTGGGGTACCCTGGAGACAGCGCTTTTTTATTAAAATTATTTCA
TACTTTCTCACTTGAATGTTTCAGGTGAAGTACTTGTCTTTATGGACGCT
CACTGCGAAGTGGGGCCAAACTGGTTACCACCCATATTGGCGCCCATTTA
TGAGAATCCACGAACTCTTTCCGTACCTGTTATTGATGGTATACAGTGGA
GTGATTTTTCTATCAACCCTGTTTACGCCGAAGGAGCTCATTCAAGAGGT
ATATTTTTTCTTATTATTTATAAAGTATTAATTTATTGACTTGAGATTGA
GTGTGTCAATAAATTCGAACCAATCAGGAATGAACATCATGTAACAAGCA
CATGAAAATTTCGAGTAAAAGCGTGGTTTGTCTTCAGACTTTAACTTTGC
AACCTGTGTATTAAGTACACAACTTGTGCTCTCCTTTAGTCTAGCAAGCT
AGACGACTAATTCGTACATAGTAGAAATAAAGCAAAAAAGTAAATTTAAG
TCGTCTAGAAACCTTTGTGCACTAACTCCAAACAAAAGAAAGTGTCAATA
TCGCAATTAAAATGTTTTCCCGCTCAAAAAAAATTCTTGAAAATAAAATG
TGTGTGGATTTATGTGTTAAAAGTTTTTCATTTAAATTGATTTTATTTTG
AGAGTTTGTTGTTACTTGATAGATTGTTTTCTCGCTACGCAAGTTTCTGC
GTAGCTAGCCCCGGTATCTATAAGGCTAGAACACCGGATTCTTCCAGTTG
TTTATACAAACTAAATCCCGTATCATTATTTATGTTTATTATTAGTATTA
CATGCATTATAAACGACTCCAGTCTAGCTCTCCTTATATGATTAGTGACA
AAAGTATCATTTTAGGTAAAATATTTGTTGTGGTTAGTTAAAGCCAGAGA
TAACTATATATTTCCTTATGACGTTTTCTCGATTTGTATTTTTCACCTCT
AATGTTTTCCTAGGTATCTTCGAATGGGGTATGTTGTACAAAGAAGGACC
TCTACCCGAGAAAGAAGCTAAAAAACGAAGTCGTCATTCCGAACCTTACA
ATGCTCCAACACACGCTGGTGGTTTGTTCGCTATTCGTAGAGATTGGTTC
AAAGAGTTGGGATGGTATGATCCAGGTAATTCTACTCACTTTTTGATCTT
TTACGATAATTTCATAATTTCATCCCCCCTATATGTGTATCCCCCTATTT
TAAAAAACCCGTGCTATTGACAGCAGCATTCCACCAGTCATTTAAAACCT
TTATTTATATTTAGCTATCTACACTTTAGTTGTCCGACACCAAATATGTA
AATCAATACAAATATGATAGATATTTTGACCAAAGGTTGACAACTTTTAA
CAACTCCCCCCCCCCTAAAATCTTAAACCCCAATTTTTTCGAAAAATCTC
CTATCCCCCCTATAAAGCATCTTTGGAAAAGTTGGATCCCCCTTTAAAAA
AAGGGGGTTCACACTATGAATTTTTTCGATCATGTTTTGCACGGTATCTT
TCGGTGCAGTGATTTTTCAACGCCATAGATCTTGAAAGCGATCTTGGTAA
TTTGATATTATTATTTTCGATATTCCTGAGTAGGCTGGTAGTACCTTCAA
AGGGCGCCACATGCACTGACGCCATTAATGCCAACTGAACTGATTTCTTT
CTAAGGTTACCACGTGCAATGACCTATGTTAAGATATATCCGCCTGATCT
CTGATCGGAGTACTCGACGTGGTGTTTTTTTAAGGTTTTTATCAAAGATT
TTGTGTGGCCGGAATCAAGGGTGTTCTTATAAAGCTCAGTGACCATATGG
GAACCTTCAATCCAATAAGAGTAATCTACTGTGCTTTTTTTAAGATCTGA
TTAGAATTTTTCCCTTTCTATTGTCATTCTTTCAAAGAAAGTCATAATAT
GAAGATCTCTCTTTTTTGGAGATTCCCAATATTTTCATTCCCGTCTAATC
TCCTTTACTTTTTACGATGCTAGGTTTACTCATTTGGGGAGGAGAGAACT
ACGAGTTGGCTTTCAAGCTATGGCAATGTGGAGGACGTTCAGTGTGGGTG
CCCTGTTCACGCATTGGTCACGTTTATCGTGGCCATTCGTGCTCATCGTG
TCATTCAGGGGATTTGGGTAAAAAATGGGGAAATTACCCTCTAGCATTAC
GTAATTATAAGCGTTTGATCGAAGTTTGGTTTGATGATAAATATAAGGAA
TTTTTCTACACGCGTGAACCGTTGGCACGATTTATCGATCACGGAGATAT
TTCTGAACAGTTGGCTTTGAAGAAACGAATGAATTGTAAATCTTTCACTT
GGTTCATGGAAGAAGTTGCATATGATGTTTTATTCAAGTATCCCGAACTT
CCTCCGAACAAACACTGGGGTGAAATCAAGAATATGGAAAACGGTCAATG
CATAGACACGTACAGTCGATCACCGCCCGGGCGGATTGGTATCTCTGGGT
GTCATGGTTGGGGCGGAAATCAGCTCATTCGTTTGAATAGTCAGGGTCAG
TTAGCCTCAGGTGAATGGTGTATCAAGCACATGCCGACCACCAATCCAAA
CGAAAACCACTTCGGAATGGCGTGGTGTGAACAAGGCTCTGTTGACGGAC
CCTGGCACTTTGAAGAAAACACAGGGCTCCTCAAAAATACACACGAAAAC
AAATGTGTCGCTATTGATCGAAATAATTTAAAGCTCGTTCTAACTGAGTG
TGATAAAAACAATAAACTACATCGCTGGGATTATCGTCCGCTTAAACCAA
AATGGCACAAGAACTTTTAAAATATAGTTTTTTAGATAGAAAAATGAGCT
CACATGGTTGTTGTTGAAAGACATAATATCTTTCCAATGTTTGAATATTA
TTTATTTTTTTTGAAAGAATTTCAAAAGTATTCAATATTTTAGTAGTGTT
TTAGACGTTTTTTATGTAAGGTGTTGGGTTTTTAGATAGAGCTTTGTTGC
TTTTAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011609	XLOC_011609	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000363	supercontig	sc0000363:168904..174360 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.2332	37.585	40.6754	44.0895	52.2189	40.3534	90.7039	94.1269	70.8251	77.0949	39.6556	40.7292	22.9299	20.7653	31.46	33.0227	43.9089	38.0163	10.7346	20.6935	24.9831	27.0069	45.9071	47.0266	31.3062	35.2773	21.0349	12.5519	39.1759	34.0842

Blast

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BLAST of TCONS_00020697 vs. Swiss-Prot (Human)
Match: GALT7 (N-acetylgalactosaminyltransferase 7 OS=Homo sapiens GN=GALNT7 PE=1 SV=1)

HSP 1 Score: 441.039 bits (1133), Expect = 7.547e-145
Identity = 233/535 (43.55%), Postives = 331/535 (61.87%), Query Frame = 1

Query:  226 GSLGNFEKKE----ASRSGPGEMGKPHRLKPEQKSEEDRLKGVYGFNQLVSDEISLDRSVPDMREKECKHWNYPKDLPTASVIFIFHNEGWSTLLRSVHSVINRTPAQFLHEIVLVDDKSEMQHLHEPLDEELKKPFYQSKVKVVRNKEREGLIRARNNGAIAAS-GEVLVFMDAHCEVGPNWLPPILAPIYENPRTLSVPVIDGIQWSDFSINPVYA--EGAHSRGIFEWGMLYKEGPLPEKEAKKRSRHSEPYNAPTHAGGLFAIRRDWFKELGWYDPGLLIWGGENYELAFKLWQCGGRSVWVPCSRIGHVYRGHSCSSCHSGDLGKKWGNYPLALRNYKRLIEVWFDDKYKEFFYTREPLARFIDHGDISEQLALKKRMNCKSFTWFMEEVAYDVLFKYPELPPNKHWGEIKNMENGQCIDTYSRSPPGRIGISGCHGWGGNQLIRLNSQGQLASGEWCIKHMPTTNPNENHFGMAWCEQGSVDGPWHFEENTGLLKNTHENKCVAIDRNNL--KLVLTECDKNNKLHRWD 1803
            G LGNFE KE        GPGE  KP  L PE K         +GFN + SD ISLDRSV D+R++ECK+W+Y ++L T+SV+ +FHNEGWSTL+R+VHSVI RTP ++L EIVL+DD S  +HL E LDE +K   +   VKV RN+ REGLI+AR+ GA  A  G+VL+++DAHCEV  NW  P++API ++    +VP+ID I  + + I P     E  ++RG ++W ML+K  PL  +E + R   +EPY +P  AGGLFAI R++F ELG YDPGL IWGGEN+E+++K+WQCGG+ ++VPCSR+GH+YR         G+    +      L+NY R++EVW+D+ YK++FY   P ++ + +GDISE    ++  NCKSF WFMEE+AYD+   YP  P N  WGEI+  E   CID+  ++  G + +  CH  GGNQL R+N   QL   + C+    T   + +   +  C        W + +N     +    KC  +DR+ +  ++ ++ CD +    +W+
Sbjct:  130 GILGNFEPKEPEPPGVVGGPGEKAKPLVLGPEFKQAIQASIKEFGFNMVASDMISLDRSVNDLRQEECKYWHYDENLLTSSVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKEKLDEYIK--LWNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAHCEVAVNWYAPLVAPISKDRTICTVPLIDVINGNTYEIIPQGGGDEDGYARGAWDWSMLWKRVPLTPQEKRLRKTKTEPYRSPAMAGGLFAIEREFFFELGLYDPGLQIWGGENFEISYKIWQCGGKLLFVPCSRVGHIYRLEGW----QGNPPPIYVGSSPTLKNYVRVVEVWWDE-YKDYFYASRPESQALPYGDISELKKFREDHNCKSFKWFMEEIAYDITSHYPLPPKNVDWGEIRGFETAYCIDSMGKTNGGFVELGPCHRMGGNQLFRINEANQLMQYDQCL----TKGADGSKVMITHCNLNEFK-EWQYFKNLHRFTHIPSGKC--LDRSEVLHQVFISNCDSSKTTQKWE 650

The following BLAST results are available for this feature:

BLAST of TCONS_00020697 vs. Swiss-Prot (Human)

BLAST of TCONS_00020697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GALT7	7.547e-145	43.55	N-acetylgalactosaminyltransferase 7 OS=Homo sapien...	[more]

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TCONS_00020697 (transcript) - C. hemisphaerica