TCONS_00020691 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020691
Unique NameTCONS_00020691
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020691 ID=TCONS_00020691|Name=TCONS_00020691|organism=Clytia hemisphaerica|type=transcript|length=409bp
GTAAATAGTATCTGTAAGCACTGTGGACCGTGGCCGAGCCAGTGTAAGAG
ACCATATTATTaggatttttgaaaagggtagattttgagataaaaactAC
CGGTTAGTAATTACAAAGCACATCCCAAATGGTCGGTCCTTGGGCTAAAA
AACCTGCCATCAGGAAAAACTCTAGGACCGAGGCGCTGGGTGGCGATTGG
TTGATGACATCGACCCGTCGTGTACACctgaaagagaaaagaaaaaaaag
gagcAAACCAAGAAAGGACATGCGTTGGGTGGGTGGgcggtaaaattatt
tttgagttatTTGGCAGAGGTGGAGAATGCAAGTGGAGTCTATTTTATAG
GATCTATATTGGCCGTAGTTTCAGAGATAATTGCCGTCAGCCGATCATTG
AGAAGAAAN
Run BLAST on NCBI

transcript from alignment at sc0000363:60620..64803-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020691 ID=TCONS_00020691|Name=TCONS_00020691|organism=Clytia hemisphaerica|type=transcript|length=4184bp|location=Sequence derived from alignment at sc0000363:60620..64803- (Clytia hemisphaerica)
GTAAATAGTATCTGTAAGCACTGTGGACCGTGGCCGAGCCAGTGTAAGAG
ACCATATTATTAGGATTTTTGAAAAGGGTAGATTTTGAGATAAAAACTAC
CGGTTAGTAATTACAAAGCACATCCCAAATGGTCGGTCCTTGGGCTAAAA
AACCTGCCATCAGGAAAAACTCTAGGACCGAGGCGCTGGGTGGCGATTGG
TTGATGACATCGACCCGTCGTGTACACCTGAAAGAGAAAAGAAAAAAAAG
GAGCAAACCAAGAAAGGACATGCGTTGGGTGGGTGGGCGGTAAAATTATT
TTTGAGTTATTTGGCAGAGGTGGAGAATACAGGTGGAGTCTATTTTATAG
GATCTATATTGGCCGTAGTTCCAGAGATAATTGCCGTCAGCCGATCATTG
AGAAGAAACATGGCGGAAAAGTATTGGCGGGAAATATTGACCCGTCAAAG
CGGGATGCTAAGCAAGGGAATCTGTGTGCGGGAGAAGCAGGTTCGGTAAT
TAACCTAAGCTAATAAATTAGCTCCAATTAATTATCTGACCTGTGGGCAA
CGATTGATAAAACGGTTCGAAATAAACACTGTAAAAGTATCATGAGTAGT
ATTCCAAAATGATGATCCTGTTTTACCTAATGGGGATCGAATGATAAGGC
TGGATTAAAAATTTCCTTAGTCTATTGTTCGAAATGAAGATCCTGTTTTG
CCTAGAATGGATCTGAGTGAAAATAAATGGAGACAAGATAATTGAATGAA
GTCGAAATNAGTCTATTGTTCGAAATGAAGATCCTGTTTTGCCTAGAATG
GATCTGAGTGAAAATAAATGGAGACAAGATAATTGAATGAAGTCGAAATT
TATTAAATGAAAAAACATAAAAATCAATGGATTGCTTTGGGGTAACATTG
GGGATGTGTTGTGTACCTTAATTCTAATCAAACAAGTGAGCCATGATATC
CTGTGCACTGTATGGGCTGAGCAGCCAGGACAATGACACTAGGAATGTAA
GGAGGCCCTAAGGTTACCGAAGGTAAGCCAACACCCCCAAAGCCACCCCA
AATCCAAAAATAGCAACATAGCATACACCATAGATAAAACGAAAAACTTA
ACACAGTTGCTGGTAATACAACTTCACCCTTCATGTTGGTCCCAATAGAA
GAGGTAAATGTGGAACTGAAATTGTGTTTGTTAGTGTCTGACCATCCAGA
AATTGTAAATAATGTTCGCTGGGTCAGGGTCTTAGTAAGCTGATCAATGA
CTCAAGAGCACCCGAATACCTGTCCAAAAGCGCCAAGGCTCGACCAATTA
AAAAAAAACAAAAAAAAACAACAAAAAAACGTGAGTATCGATGTTGGTTA
TGTTGGCCGGGGAAGGTTAACTCAAAGGGTTACTAGTTGGGGGCCGTGTT
AAAATTGCCATTGGATGAAATGAGAGAACTGGATTGCAGTAAATTGGTTG
GAATAATGTCTCATAGCAACTACTGGGCATAATTGATAGGAAAGGGCATG
TTATCTAATTGTTTGAATGGTTAAGGTGTTGCTTGATTCTGACAGGCATA
TCATTGTAAAGTTTGTGTTGGAGGAAACATACTGAAGGTGAGAGGTTGGA
TAAAACTGCCAGGGAACAGGCATGTGTACTTGATACTTAAAGTACATAAT
TTCCCTCCCTATCTAAATATTTTGTCTGCCCTTCACATTCTTATGCTTGA
CATACTATTGTTCTTAAACAATAGAGCCTTTAGGTACCAAAAACTGAGAT
TCTATATACTTAAACGTGGTTTCAGAAAAAAAAAACAAAAAAAAAACATG
TGATCCGAAGAATGGTACTAGAGGCAGATTGAAACATTGCCTTGTGAACA
GGTGAAAATCCAGAATAATGTGAAGGTGTTGAATTGTGGTATGGGACCTG
AGCCGTCAAGAGTTATCTTAAAATTGTTGGCTTGAAAAGAGTTGAAGATA
TTGAACCCAATAAGTGAGAAAACTGACCCCGCATGTTTGTTAGAAACTCT
AGAAAATATACACTTGATAGACTTGAAGGGTAGCTTGCAATTGGCTAAGA
AAACAGGATGAAAACTTGAAGGGGAGTAACTGATAGGTTCTTGTCCCTGA
AAAAAGGAACCAAATCCCAAAAAGACATGTCAGTAGACAAAGCTAGGAAA
GTGAGGACACAATAGGGCTCAGCTTAAGGGATTCCCCATTATAAGGGCAG
AGGAAGGTACGCCCCATGGTAAGATATTCTAAAACCTTTTGAGAAATAAG
ATGAGAGCTATGACCATGATGGAGGAGCTTAGCTACAGAAGTAAAATTGG
CGACAATCAAAAAAATTCTAAAAGTTGATAGCCCTGCAAGCAAAGAGATG
AGAGCCTATTAGGAGAAGAAAAAAAAAAAAAAAGGAGTTTATCGTGCTTG
GTACATTTACTGAGTAACTGAGATTTAACAGTATTGGAAAGACAAAACGC
CTGTTTGTAAGTAGTCTGTTTAGAAGGGGACTAGCTCTATGCACTACATA
GCAAAATGTATACAACTACAAGCCAATAATTTCACAATATAAAAATATAA
CTTGCATTTTTATTCTTTACTATGTATTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTTCACAATATAAAAATATAACTTGCATTTTTATTCT
TTACTATGTATTCGAGGGTTCATATTTCACTTAAAAGAGGCTGTATATAT
GATCAAGTTGACGAAAATTGCCGACCCCCCCCCCTTTCTTATTGAACCNA
GGCTGTATATATGATCAAGTTGACCAAAATTGCCGACCCCCCCTTTCTTA
TTGAACCTCTATATATTCCCCCCATCCCCTCCAGTTTATAAGAAAATCTT
AATAACCCCTACAAAGACCCCCAAAATTTGGGATCCCCTTTTTTATATGT
ATCCCATTTTGAGACATGTGCCTTATTTGTTCTAGGAGCTTGACTCCTTG
AGAGAAGTGGTTGCTGCAAGGTTAAACTGCCTGTATTTCCCTATATACCT
ACCTCCCTTTGCAATGAATTTTAGAAAATCTGTTTTAAGGTAATTCACTC
TAGGCACTACTTAAGTGATGAAAGTACAAATGATTAGTCGCAAGCCAACG
AGCTCACAATCTTGCAATATACTTGACAATATAACTAGTGTTTAACATGA
TACACGTGTTTGGGTTGTATATACATATTTATACTTAAAAACAGACTGAA
CATATTTGTATATGATTAAGTTGATCAAAGACACCATTCTCCTTGTTAAT
TGACCCCCTAGTTTCCCAGCTAAATCTACTAGGTGTCCCCCTTTTTTACA
AAGGCCCTCTCAAGATTGGCCTCCTCCGTCGTGATAGAAAGGGGATGTGC
AAAGTATGTTGCTCTGGTGCCACAAAACATTTAAAGTTAAAGTTCTTTAC
ATACAGATTGAAATATAACACTCGGTTGAACCCAATGTAACTTGTAGCGA
GTTGTGTAGGCAAGCAAGGAAGGGACTGACTGAGAAGGGCTTTATCGTAG
TATATACCAGTCTGAGAAAATGTATATTGTCAAAAATTGCGCAGCCGTGC
CGAATGAGCTTAAAAAACTGTATCGGTTGAATGACAAGGACCCGAGAGAG
CTAGGGAGCAAGTAAGAAAATCTTAATTTCTTAGTACCTTGAGTAGTTCT
GCTTTGCCTTTGGTCAGGTTATTGCTGACCCCGAAAATACTATCCCCATA
AAATAAAATGGGCAACTGTAGGTGTTGGTAGCTCACCTAACATTTTGAGG
AGGTAAAGAATCCAAGTTTACAAACTCACCACGTTTGATGCAGTTGATAA
CATTGGCTGGAACTTGAGATGATTGTAACTTTGCGAGTTACAAGAGCAGC
CATTTTGATCGTCTTGTTGATATTGAAGATAAAAGAAATATACCGGTGCC
GAAGGTTTGTTATGATTTTGTCGAATAGAAAATGGCAGATCATATTGTGT
TGCTGTCAGTATTTTCTGTATTTTGTTTTTTCGATTTTTAAAACCACAAC
AGATGTATTTGTTGATCCATAGCAAGATGACTTAATTTTTTATTCAATTT
CATATCGACATGGTGTAAAATTATTTTTGAGCTATTTGGCAGAGGTGGAG
AATGCAAGTGGAGTCTATTTTATAGGATCTATATTGGCCGTAGTTTCAGA
GATAATTGCCGTCAGCCGATCATTGAGAAGAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011607XLOC_011607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020691-exon-sc0000363-1575043694:64485..64803TCONS_00020691-exon-sc0000363-1575043694:64485..64803Clytia hemisphaericaexon
TCONS_00020691-exon-sc0000363-1575043694:60620..60709TCONS_00020691-exon-sc0000363-1575043694:60620..60709Clytia hemisphaericaexon
TCONS_00020691-exon-sc0000363-1510915933:64485..64803TCONS_00020691-exon-sc0000363-1510915933:64485..64803Clytia hemisphaericaexon
TCONS_00020691-exon-sc0000363-1510915933:60620..60709TCONS_00020691-exon-sc0000363-1510915933:60620..60709Clytia hemisphaericaexon
TCONS_00020691-exon-sc0000363-1491911889:64485..64803TCONS_00020691-exon-sc0000363-1491911889:64485..64803Clytia hemisphaericaexon
TCONS_00020691-exon-sc0000363-1491911889:60620..60709TCONS_00020691-exon-sc0000363-1491911889:60620..60709Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:60620..64803 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75625	0.921369	0.867478	0.231584	5.20285	3.97191	2.8024	4.17915	0.830693	4.93251	2.18853	1.58362	3.72091	1.50365	2.17125	4.70702	3.14005	4.06786	1.41541	1.98726	2.64378	1.16571	3.21612	1.87246	2.81374	4.78759	3.74994	3.99573	2.10732	2.43208
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020691 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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