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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020685 ID=TCONS_00020685|Name=TCONS_00020685|organism=Clytia hemisphaerica|type=transcript|length=420bp
aaaaacttTGCGAAATAACCTTGAGAAATCATCTGTCAATGGTACAAGGA
ATCTAATGGTTGGTGGAAAGGAAATACGCTGGGCTCATGTTAGAAATGCC
TACGAAATGGACTTAAACAAGAACAGCCTTGCGCCTGGTCTTCGAAAAct
acacaaaatttcatttgacCATATTCATCTCACCCCAAGATTGCGAATGA
GAGTCAATTTAGCTGCACAGGTTTTGAGTAAAACTATGGCAGATTATTTG
GAGCAGAAAAATCAACAACATACCAAAGCCACAGAAGATTTCATTCGAAA
AATTGATAagttttttgattgtttgaatgGCGGACACGTGTGGAGAGCGC
AAAccaaactaaagaaaaatttgaagccCTATTATAAGGCTGAAATCGAA
AAGACAGATCCTGAAGAAAA Run BLAST on NCBI protein sequence of TCONS_00020685-protein >TCONS_00020685-protein ID=TCONS_00020685-protein|Name=TCONS_00020685-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
KTLRNNLEKSSVNGTRNLMVGGKEIRWAHVRNAYEMDLNKNSLAPGLRKL
HKISFDHIHLTPRLRMRVNLAAQVLSKTMADYLEQKNQQHTKATEDFIRK
IDKFFDCLNGGHVWRAQTKLKKNLKPYYKAEIEKTDPEE Run BLAST on NCBI transcript from alignment at sc0000363:304165..305407+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020685 ID=TCONS_00020685|Name=TCONS_00020685|organism=Clytia hemisphaerica|type=transcript|length=1243bp|location=Sequence derived from alignment at sc0000363:304165..305407+ (Clytia hemisphaerica)
aaaaacttTGCGAAATAACCTTGAGAAATCATCTGTCAATGGTACAAGGA
ATCTAATGGTATGTGTCaatgctgtttttttttatttagacatTGACTTT
TGTTAGACTAGTATTTTTTAATCTTAATAACATTTGCTTGTTTGCTAATT
CTGAggaacaaaaattttcattatgtctggtatgaatatttttctaaaat
gctCTCTTTGTTTGTTCCTTNTTGACTTTTGTTAGACTAGTATTTTTTAA
TCTTAATAACATTTGCTTGTTTGCTAATTCTGAggaacaaaaattttcat
tatgcctgatatgaatatttttctaaaatgctCTCTTTGTTTGTTCCTTA
TCAGGAAGCAATTCTGTTAGtgcatttttggaaatatcacCTATAGTTAT
TAAAATATTGATCATATCTCTACtataatgtttatttttatgGATTTATC
CTCCTCCTTTGTGTCTATCCCATCCCAAGTATTACAATGTAGCAAGAAGA
GTATTCATTGAAGACTAATCATTTCTTTTTAAAGGTTGGTGGAAAGGAAA
TACGCTGGGCTCATGTTAGAAATGCCTACGAAATGGACTTAAACAAGAAC
AGCCTTGCGCCTGGTCTTCGAAAActacacaaaatttcatttgacCATAT
TCATCTCACCCCAAGATTGCGAATGAGAGTCAATTTAGCTGCACAGGTTA
GTgatgttttatattttacaaggtgtccggacaattccccctggtgaatt
ccccccggtgaattcccacccAGCAAATTAGATTTTCGCTTTGTAAATAA
ATCGTTCTATCAATCTTTTgggtgggaattcaccggggggaTTCACCAAG
GGGGAATTGTCCGGGAAGCATTTTACAATTacaataatattttcttttta
gttttttatatCGTTCATTTAAGCAaggttttttcagtttttggtttgat
tttaaaaatctcTTTACCAGTACAACCTTAGATTAGGAAATAATAAGCTC
TGGCCACTTCCATATTTTAGATTTCAATTTAATTATATCATAGGTTTTGA
GTAAAACTATGGCAGATTATTTGGAGCAGAAAAATCAACAACATACCAAA
GCCACAGAAGATTTCATTCGAAAAATTGATAagttttttgattgtttgaa
tgGCGGACACGTGTGGAGAGCGCAAAccaaactaaagaaaaatttgaagc
cCTATTATAAGGCTGAAATCGAAAAGACAGATCCTGAAGAAAA Coding sequence (CDS) from alignment at sc0000363:304165..305407+ >TCONS_00020685 ID=TCONS_00020685|Name=TCONS_00020685|organism=Clytia hemisphaerica|type=CDS|length=1251bp|location=Sequence derived from alignment at sc0000363:304165..305407+ (Clytia hemisphaerica)
aaaacttTGCGAAATAACCTTGAGAAATCATCTGTCAATGGTACAAGGAA
TCTAATGGTTGGTGGAAAGGAAATACGCTGGGCTCATGTTAGAAATGCCT
ACGAAATGGACTTAAACAAGAACAGCCTTGCGCCTGGTCTTCGAAAActa
cacaaaatttcatttgacCATATTCATCTCACCCCAAGATTGCGAATGAG
AGTCAATTTAGCTGCACAGGTTTTGAGTAAAACTATGGCAGATTATTTGG
AGCAGAAAAATCAACAACATACCAAAGCCACAGAAGATTTCATTCGAAAA
ATTGATAagttttttgattgtttgaatgGCGGACACGTGTGGAGAGCGCA
AAccaaactaaagaaaaatttgaagccCTATTATAAGGCTGAAATCGAAA
AGACAGATCCTGAAGAAaaaacttTGCGAAATAACCTTGAGAAATCATCT
GTCAATGGTACAAGGAATCTAATGGTTGGTGGAAAGGAAATACGCTGGGC
TCATGTTAGAAATGCCTACGAAATGGACTTAAACAAGAACAGCCTTGCGC
CTGGTCTTCGAAAActacacaaaatttcatttgacCATATTCATCTCACC
CCAAGATTGCGAATGAGAGTCAATTTAGCTGCACAGGTTTTGAGTAAAAC
TATGGCAGATTATTTGGAGCAGAAAAATCAACAACATACCAAAGCCACAG
AAGATTTCATTCGAAAAATTGATAagttttttgattgtttgaatgGCGGA
CACGTGTGGAGAGCGCAAAccaaactaaagaaaaatttgaagccCTATTA
TAAGGCTGAAATCGAAAAGACAGATCCTGAAGAAaaaacttTGCGAAATA
ACCTTGAGAAATCATCTGTCAATGGTACAAGGAATCTAATGGTTGGTGGA
AAGGAAATACGCTGGGCTCATGTTAGAAATGCCTACGAAATGGACTTAAA
CAAGAACAGCCTTGCGCCTGGTCTTCGAAAActacacaaaatttcatttg
acCATATTCATCTCACCCCAAGATTGCGAATGAGAGTCAATTTAGCTGCA
CAGGTTTTGAGTAAAACTATGGCAGATTATTTGGAGCAGAAAAATCAACA
ACATACCAAAGCCACAGAAGATTTCATTCGAAAAATTGATAagttttttg
attgtttgaatgGCGGACACGTGTGGAGAGCGCAAAccaaactaaagaaa
aatttgaagccCTATTATAAGGCTGAAATCGAAAAGACAGATCCTGAAGA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020685-exon-sc0000363-1491911889:304165..304222 | TCONS_00020685-exon-sc0000363-1491911889:304165..304222 | Clytia hemisphaerica | exon |
| TCONS_00020685-exon-sc0000363-1510915933:304165..304222 | TCONS_00020685-exon-sc0000363-1510915933:304165..304222 | Clytia hemisphaerica | exon |
| TCONS_00020685-exon-sc0000363-1575043694:304165..304222 | TCONS_00020685-exon-sc0000363-1575043694:304165..304222 | Clytia hemisphaerica | exon |
| TCONS_00020685-exon-sc0000363-1491911889:304699..304860 | TCONS_00020685-exon-sc0000363-1491911889:304699..304860 | Clytia hemisphaerica | exon |
| TCONS_00020685-exon-sc0000363-1510915933:304699..304860 | TCONS_00020685-exon-sc0000363-1510915933:304699..304860 | Clytia hemisphaerica | exon |
| TCONS_00020685-exon-sc0000363-1575043694:304699..304860 | TCONS_00020685-exon-sc0000363-1575043694:304699..304860 | Clytia hemisphaerica | exon |
| TCONS_00020685-exon-sc0000363-1491911889:305208..305407 | TCONS_00020685-exon-sc0000363-1491911889:305208..305407 | Clytia hemisphaerica | exon |
| TCONS_00020685-exon-sc0000363-1510915933:305208..305407 | TCONS_00020685-exon-sc0000363-1510915933:305208..305407 | Clytia hemisphaerica | exon |
| TCONS_00020685-exon-sc0000363-1575043694:305208..305407 | TCONS_00020685-exon-sc0000363-1575043694:305208..305407 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000363 | supercontig | sc0000363:304165..305407 + |
Blast
The following BLAST results are available for this feature:
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