TCONS_00020684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020684
Unique NameTCONS_00020684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2014

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020684 ID=TCONS_00020684|Name=TCONS_00020684|organism=Clytia hemisphaerica|type=transcript|length=2014bp
GTCAAGTCAAATCGAAAGGAAGCGAAAAGTGATCGAAGATAGAAAATACT
AATTTTATGTGATATTGtgttaatttttttgctgtaaatggaaaaattga
aaattgaaactgtTTGTTTATGATGGATCAACACCTAAAGGAGCTTTCGA
AGCTTTGTCGACTGTGCAGAAAGAAAGTCAATACAAATGTTTCGTATACA
GATTCCAAGACTTGTGACAAatataaaaacaagattttcatgcttttttc
ctATGATATCTCGAAGGACAGTTCACTTCAACATCCGACAAAACTATGCC
ACAATTGTACAGTAAAGCTTGGTAAAGTCAAGAGTGAACACCAATATTTG
GATACAGCGATCGCAGAGTTTCAGGAGCACGATGATAACTGCACATTATG
TCGGTTGCACAGGCTGCCAGAACACAAGTTTCCAATGAGGCAAGCAAATA
TATTTGATCTTGATACGTTGGTCAGCCAAGCTAAAGAACGTGGTTTTGTT
GTTCTGGATTTTTCATCGCAAAAATTTGCTAAAATTGGCCTTCTGAATGA
AAGAAATATTGTTACGCTTTGGCTTACAGTTAAGCAAGACTTAACGTGGG
AATTGAGGGCATTTCAAAGGGATATTTTGGATGGGCCATTTTTCGAAATG
CTCCCCTCAGTTCTAACTGTCGATAATTTTGACAATGTGCTTGGAGAgct
gaaaaatgcaaaaatatgcATTGGAAATAATGACTTTAAAGATTTGATTG
AGCACAAAGTTGAGGGTTTGGGTAGCTTTTTACCAAAAGGTCATTTGGAA
GATGAGCAACTCAATGTTTTGACGACAACTGCATTCATTATCCGCTCAGC
TGAGTGTTCTGTAGTTCTTGCCAGCAACCATGGCCCTGACCGTTGTAAAT
TTTGCTCGAAACACAGAAAAACACTTCTCAATGTCAATCGAAAGCTGCCT
AGTATTGTATCAAGTGCTGTTAAGAAGAAACGCCCTTACAGCAGCATGAG
CAAAAAGCAATTAAAACGTAAACTTTTTGACTCAAGTGTCGAAATAAAGG
AACTTCAACGACAAAAAAGAGTTTTGGAGAAGAAGCTAANAGTGCTGTTA
AGAAGAAACGCCCTCACAGCAGCATGAGCAAAAAGCAATTAAAACGTAAA
CTTTTTGACTCAAGTGTCGAAATAAAGGAACTTCAACGACAAAAAAGAGT
TTTGGAGAAGAAGCTAACtcaatcaacaaaagaaaaagGGATGAAGCTTA
AACGTAAGGATGGTAATCTGATATCAGCCATAATGAAGAAAGAAACAAAC
ATGTTCGGAGAAAATACAGCAATGGCACTGTTATGGGAGCAGCAAAGGAA
AGCCAGTGGTTACAAAAAACCATCATCGATGAAATGGCATCCTGTTATTA
TTAGATGGTGTCTCAGCATTTACTTAAAGTCTCCAGgggcTTATGACCAT
ATTAGAGACACTGGATTTCTTCAGCTTCCCCATCAAACTACATTAAATCA
GTATACTAACTTCACTGACATCGGCTGTGGATACAACCCAGATGTAATCA
AGCGCCTTTTGGACGATCATTTAGCCAACGTAccagaagaaaaaagaatt
tgtaGTCTCCTCTTCGATGAAATGAAGATTAAATCAGGCCTGGTGTTCAG
CCGAAAAACAgGTAAAATGATTCGCTTCACTTCTTTGGGAGAcatcaatg
atgaaattaatCTTCTGGAGAAacagatgaaaaatgaaagcatCACTGAG
CCTCCTGAAATTGCAACCCATGTTTTAGCTGTTATGGCCAGAGGTATTGT
TAAATACTTTAGCTATCCTATCGGATACTTTGCTACCACTTCAGCAGATT
CAGGTCAACTCTACAACATAATTTGGGATGGAGTTGCAGCCCTTGAAATG
AGTGGTGTAAAGGTTCTCGCCTTTATCTGTGATGGTGCATCAGCAAATAG
AGCGTTTTTTGCTCTGCATAAACTGCAAGATGGATCAAACGTTTCTGATG
ATGGTGTGGTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00020684-protein

>TCONS_00020684-protein ID=TCONS_00020684-protein|Name=TCONS_00020684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MMDQHLKELSKLCRLCRKKVNTNVSYTDSKTCDKYKNKIFMLFSYDISKD
SSLQHPTKLCHNCTVKLGKVKSEHQYLDTAIAEFQEHDDNCTLCRLHRLP
EHKFPMRQANIFDLDTLVSQAKERGFVVLDFSSQKFAKIGLLNERNIVTL
WLTVKQDLTWELRAFQRDILDGPFFEMLPSVLTVDNFDNVLGELKNAKIC
IGNNDFKDLIEHKVEGLGSFLPKGHLEDEQLNVLTTTAFIIRSAECSVVL
ASNHGPDRCKFCSKHRKTLLNVNRKLPSIVSSAVKKKRPYSSMSKKQLKR
KLFDSSVEIKELQRQKRVLEKKLXVLLRRNALTAA
Run BLAST on NCBI

transcript from alignment at sc0000363:300773..304099+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020684 ID=TCONS_00020684|Name=TCONS_00020684|organism=Clytia hemisphaerica|type=transcript|length=3327bp|location=Sequence derived from alignment at sc0000363:300773..304099+ (Clytia hemisphaerica)
GTCAAGTCAAATCGAAAGGAAGCGAAAAGTGATCGAAGATAGAAAATACT
AATTTTATGTGATATTGtgttaatttttttgctgtaaatggaaaaattga
aaattgaaactgtTTGTTTATGATGGATCAACACCTAAAGGAGCTTTCGA
AGCTTTGTCGACTGTGCAGAAAGAAAGTCAATACAAATGTTTCGTATACA
GATTCCAAGACTTGTGACAAatataaaaacaagattttcatgcttttttc
ctATGATATCTCGAAGGACAGTTCACTTCAACATCCGACAAAACTATGCC
ACAATTGTACAGTAAAGCTTGGTAAAGTCAAGAGTGAACACCAATATTTG
GATACAGCGATCGCAGAGTTTCAGGAGCACGATGATAACTGCACATTATG
TCGGTTGCACAGGCTGCCAGAACACAAGTTTCCAATGAGGCAAGCAAATA
TATTTGATCTTGATACGTTGGTCAGCCAAGCTAAAGAACGTGGTTTTGTT
GTTCTGGATTTTTCATCGCAAAAATTTGCTAAAATTGGCCTTCTGAATGA
AAGAAATATTGTTACGCTTTGGCTTACAGTTAAGCAAGACTTAACGTGGG
AATTGAGGGCATTTCAAAGGGATATTTTGGATGGGCCATTTTTCGAAATG
CTCCCCTCAGTTCTAACTGTCGATAATTTTGACAATGTGCTTGGAGAgct
gaaaaatgcaaaaatatgcATTGGAAATAATGACTTTAAAGATTTGATTG
AGCACAAAGTTGAGGGTTTGGGTAGCTTTTTACCAAAAGGTCATTTGGAA
GATGAGCAACTCAATGTTTTGACGACAACTGCATTCATTATCCGCTCAGC
TGAGTGTTCTGTAGTTCTTGCCAGCAACCATGGCCCTGACCGTTGTAAAT
TTTGCTCGAAACACAGAAAAACACTTCTCAATGTCAATCGAAAGCTGCCT
AGTATTGTATCAAGTGCTGTTAAGAAGAAACGCCCTTACAGCAGCATGAG
CAAAAAGCAATTAAAACGTAAACTTTTTGACTCAAGTGTCGAAATAAAGG
AACTTCAACGACAAAAAAGAGTTTTGGAGAAGAAGCTAANAGTGCTGTTA
AGAAGAAACGCCCTCACAGCAGCATGAGCAAAAAGCAATTAAAACGTAAA
CTTTTTGACTCAAGTGTCGAAATAAAGGAACTTCAACGACAAAAAAGAGT
TTTGGAGAAGAAGCTAACtcaatcaacaaaagaaaaaggcaTATATTATT
TCAGAAAACTCAGATACTAGTTACGCCTCAGGAAATTAatcaaacttgtg
aaaaatacacattcttcatttatttttaaacatACCACCGTCAACTGGGG
TAACTTTCACATGTTTGGGGTAACTTTCATTAACTCCAAACAGCAGATTT
TTCTGGTCTGCCATTTTCcaaagtaaagaaaaacaacacatGACTTACTA
AGAACTGTTTACATTCTATCTACATTCAAttgaaaattacagaccagaaa
aatcTGCTGTTTGGAGTTGATGAAAGTAACCCTGGTTGACGGTAATGCCT
ACATGCATATAGATCATCATATCAATTGTAAGCTCCATTTTCATACATGT
TACAGTTTATCTGCTTTGTATTGATAGACAATAAAATGTACGTACTTTAC
CAGTAAATTTNTCTACGCATATAGATCATCATATCAATTGTAAGCTCCAT
TTTTATACATGTTACAGTTTATCTGCTTTGTATTGATAGACAATAAAATG
TACGTACTTTACCAGTAAATTTTCCAATTCCTAAAATAAAAGAGTTGCAA
TTAAATCGTTAATTGTGCATTCAGATATAAGTCTTTAggtacattttttc
ttttggaaagttAATATAAAAGGACCACCCTGAAGTCCATCCTCAGACTC
AATTTTTGTCCACCTTTTAGGGATGAAGCTTAAACGTAAGGATGGTAATC
TGATATCAGCCATAATGAAGAAAGAAACAAACATGTTCGGAGAAAATACA
GCAATGGCACTGTTATGGGAGCAGCAAAGGAAAGCCAGTGGTTACAAAAA
ACCATCATCGATGAAATGGCATCCTGTTATTATTAGATGGTGTCTCAGCA
TTTACTTAAAGTCTCCAGGTAAATATATATTTTAGGCTCAAAAGTTATTa
ctaaaaaaagtttcaaattatAATTTACAATTCTCAGATTTATCAGCATA
CCTTTTTCCAAGGATACTTCAAAAGCTAAAACTTTAGCTCTTATCCTTGT
TTTTTGTAAGCATATTATTtaacaaaattttcgaaatccttatgaaaatt
tttaataataaGGGAATTATTTTCTGCCCAGGGGACACAAGTTGCATTCT
TTCATTTGGTTAACTAAATGCTTAGGCCTCTGATCTATTACAAACTATGC
AAAAGATTATCACgaatgttttttaaaatatttttaggggcTTATGACCA
TATTAGAGACACTGGATTTCTTCAGCTTCCCCATCAAACTACATTAAATC
AGTATACTAACTTCACTGACATCGGCTGTGGATACAACCCAGATGTAATC
AAGCGCCTTTTGGACGATCATTTAGCCAACGTAccagaagaaaaaagaat
ttgtaGTCTCCTCTTCGATGAAATGAAGATTAAATCAGGCCTGGTGTTCA
GCCGAAAAACAggtgatttttaaaaaagggCTTCAAAGCtatctttaaaa
atttataaaccTTTAAACATTTCTCTCTATTACTCAATCTCTCAGTCAGA
GTCACCCCTAGGAAACAAGCCCCAGTATTGTTTAAATtacagcccccaat
caagcaaaaatggtttaccACCTAATCTCAAGGGGCTGCATTCTATGTAA
GCTTCTAACTTTCTACGAATTAAAaggcatcagattgttttttatggAGA
AGTATTCATGGAGAGTGTCATACACTACTAACTGTGGAAGGTTAATATTG
ATTTTAAAACCTTCTTTATTACAGGTAAAATGATTCGCTTCACTTCTTTG
GGAGAcatcaatgatgaaattaatCTTCTGGAGAAacagatgaaaaatga
aagcatCACTGAGCCTCCTGAAATTGCAACCCATGTTTTAGCTGTTATGG
CCAGAGGTATTGTTAAATACTTTAGCTATCCTATCGGATACTTTGCTACC
ACTTCAGCAGATTCAGGTCAACTCTACAACATAATTTGGGATGGAGTTGC
AGCCCTTGAAATGAGTGGTGTAAAGGTTCTCGCCTTTATCTGTGATGGTG
CATCAGCAAATAGAGCGTTTTTTGCTCTGCATAAACTGCAAGATGGATCA
AACGTTTCTGATGATGGTGTGGTTTTC

Coding sequence (CDS) from alignment at sc0000363:300773..304099+

>TCONS_00020684 ID=TCONS_00020684|Name=TCONS_00020684|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000363:300773..304099+ (Clytia hemisphaerica)
ATGATGGATCAACACCTAAAGGAGCTTTCGAAGCTTTGTCGACTGTGCAG
AAAGAAAGTCAATACAAATGTTTCGTATACAGATTCCAAGACTTGTGACA
AatataaaaacaagattttcatgcttttttcctATGATATCTCGAAGGAC
AGTTCACTTCAACATCCGACAAAACTATGCCACAATTGTACAGTAAAGCT
TGGTAAAGTCAAGAGTGAACACCAATATTTGGATACAGCGATCGCAGAGT
TTCAGGAGCACGATGATAACTGCACATTATGTCGGTTGCACAGGCTGCCA
GAACACAAGTTTCCAATGAGGCAAGCAAATATATTTGATCTTGATACGTT
GGTCAGCCAAGCTAAAGAACGTGGTTTTGTTGTTCTGGATTTTTCATCGC
AAAAATTTGCTAAAATTGGCCTTCTGAATGAAAGAAATATTGTTACGCTT
TGGCTTACAGTTAAGCAAGACTTAACGTGGGAATTGAGGGCATTTCAAAG
GGATATTTTGGATGGGCCATTTTTCGAAATGCTCCCCTCAGTTCTAACTG
TCGATAATTTTGACAATGTGCTTGGAGAgctgaaaaatgcaaaaatatgc
ATTGGAAATAATGACTTTAAAGATTTGATTGAGCACAAAGTTGAGGGTTT
GGGTAGCTTTTTACCAAAAGGTCATTTGGAAGATGAGCAACTCAATGTTT
TGACGACAACTGCATTCATTATCCGCTCAGCTGAGTGTTCTGTAGTTCTT
GCCAGCAACCATGGCCCTGACCGTTGTAAATTTTGCTCGAAACACAGAAA
AACACTTCTCAATGTCAATCGAAAGCTGCCTAGTATTGTATCAAGTGCTG
TTAAGAAGAAACGCCCTTACAGCAGCATGAGCAAAAAGCAATTAAAACGT
AAACTTTTTGACTCAAGTGTCGAAATAAAGGAACTTCAACGACAAAAAAG
AGTTTTGGAGAAGAAGCTAANAGTGCTGTTAAGAAGAAACGCCCTCACAG
CAGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011601XLOC_011601Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020684-exon-sc0000363-1491911889:300773..302010TCONS_00020684-exon-sc0000363-1491911889:300773..302010Clytia hemisphaericaexon
TCONS_00020684-exon-sc0000363-1510915933:300773..302010TCONS_00020684-exon-sc0000363-1510915933:300773..302010Clytia hemisphaericaexon
TCONS_00020684-exon-sc0000363-1575043694:300773..302010TCONS_00020684-exon-sc0000363-1575043694:300773..302010Clytia hemisphaericaexon
TCONS_00020684-exon-sc0000363-1491911889:302693..302890TCONS_00020684-exon-sc0000363-1491911889:302693..302890Clytia hemisphaericaexon
TCONS_00020684-exon-sc0000363-1510915933:302693..302890TCONS_00020684-exon-sc0000363-1510915933:302693..302890Clytia hemisphaericaexon
TCONS_00020684-exon-sc0000363-1575043694:302693..302890TCONS_00020684-exon-sc0000363-1575043694:302693..302890Clytia hemisphaericaexon
TCONS_00020684-exon-sc0000363-1491911889:303210..303434TCONS_00020684-exon-sc0000363-1491911889:303210..303434Clytia hemisphaericaexon
TCONS_00020684-exon-sc0000363-1510915933:303210..303434TCONS_00020684-exon-sc0000363-1510915933:303210..303434Clytia hemisphaericaexon
TCONS_00020684-exon-sc0000363-1575043694:303210..303434TCONS_00020684-exon-sc0000363-1575043694:303210..303434Clytia hemisphaericaexon
TCONS_00020684-exon-sc0000363-1491911889:303747..304099TCONS_00020684-exon-sc0000363-1491911889:303747..304099Clytia hemisphaericaexon
TCONS_00020684-exon-sc0000363-1510915933:303747..304099TCONS_00020684-exon-sc0000363-1510915933:303747..304099Clytia hemisphaericaexon
TCONS_00020684-exon-sc0000363-1575043694:303747..304099TCONS_00020684-exon-sc0000363-1575043694:303747..304099Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020684-proteinTCONS_00020684-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000363supercontigsc0000363:300773..304099 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0252699	0.0236574	0.0165631	0.0410322	0	0.0261806	0.0653605	0.027151	0.569206	0.0718642	0.339368	0.120988	0.0835759	0.10932	0.380076	0.222466	0.202827	0.0204888	0	0.0188339	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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