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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020679 ID=TCONS_00020679|Name=TCONS_00020679|organism=Clytia hemisphaerica|type=transcript|length=2603bpRun BLAST on NCBI protein sequence of TCONS_00020679-protein >TCONS_00020679-protein ID=TCONS_00020679-protein|Name=TCONS_00020679-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp MEEEDKSSSKKKNEASSSDDQSNSWWGGWGQGWIDSVKEKSASTLEMVKKRun BLAST on NCBI transcript from alignment at sc0000363:194046..203199+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020679 ID=TCONS_00020679|Name=TCONS_00020679|organism=Clytia hemisphaerica|type=transcript|length=9154bp|location=Sequence derived from alignment at sc0000363:194046..203199+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000363:194046..203199+ >TCONS_00020679 ID=TCONS_00020679|Name=TCONS_00020679|organism=Clytia hemisphaerica|type=CDS|length=17787bp|location=Sequence derived from alignment at sc0000363:194046..203199+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020679 vs. Swiss-Prot (Human)
Match: BSDC1 (BSD domain-containing protein 1 OS=Homo sapiens GN=BSDC1 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.489e-30 Identity = 72/190 (37.89%), Postives = 110/190 (57.89%), Query Frame = 1
Query: 583 VKEKSASTLEMVKKDLNEFVEVIQGDTSVAINETADKLDEHVQQKKENTTKEKDDLGDTMNTTELVTQGVKGLSKVLHSMSELMSIQEPDDS-NEEFITL-AEGSFSLQGYNRKQEKLHMLQTDPGTYCNEPEGS---FNDWLEVFSLDEHKEDMSNLLTQNSAVRAVYSKLVPDVLSHTAFWQRYYFKV 1137
VKEKS+ LE +K+DL EF +V+Q DT+ I TA + E + + + EK M KGLS L +S+ + PD + + + ITL S + + Y+ + +L+ LQ+DP TYCNEP+G F+ WL F L+E K ++S LL + ++RA+Y+K+VP +SH+ FW RY++KV
Sbjct: 21 VKEKSSEALEFMKRDLTEFTQVVQHDTACTIAATASVVKEKLATEGSSGATEK------MK---------KGLSDFLGVISDTFA-PSPDKTIDCDVITLMGTPSGTAEPYDGTKARLYSLQSDPATYCNEPDGPPELFDAWLSQFCLEEKKGEISELLVGSPSIRALYTKMVPAAVSHSEFWHRYFYKV 194 The following BLAST results are available for this feature:
BLAST of TCONS_00020679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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