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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020651 ID=TCONS_00020651|Name=TCONS_00020651|organism=Clytia hemisphaerica|type=transcript|length=2677bp AACAGTGAAACAGGGGAATGTTATCACAACGAGTTCTTCTAATtctgttt ctttctttttttttagaatgtgAAAGAGCAAATGATGAGTATCGACGCCT TTCTCATCATGAACTGGTTTGATCCTCGCTTGACGTGGAACAAAACATTG TACAACGATACAGACAAAATTAATTTGAGGGGAGACAAAATCTGGACACC TGATATTATGCTCATCAATAGGGGTAATCCAGTGGCGAAATTCCACACGG AATTGTACATCTCAAAAGTTCTTGTGTTCAATGATGGCAATGCTGTGTGG AGCAATCTGGTGACGTTAGATGTGTCATGTGACCTTGACGTCACGTGGTT TCCTGTTGATAAACAGGAATGTTCAATGAAGTTTGGTTCATGGTCGTACG ATCGCACTCAACTTTCTCTCGTTTTTCTCAACAAACCAAACAGTACCACT GGCCTCAAATCAGATGCTTTCAACATTGACAGTGGTGAATGGGTTATCGA AGAATTCGAAGCCGAAGAAACGATTGTCCGTTTCTCATGTTGTCCGATGC CTTTTTCCGTCATCAGTTACACGTTATCTATGTCACGTGTCTCCCTCTAT TACTTCATGTACATCTTGTTACCGCTGGTGTCGTTGGCTTTCCTCTTTCT ATTGGTGTTTCACATCCCAGCAGACAGCGGTGAGCGGATGGGTTTTGGCG TCACCATCTTGCTTAGTATCACTGTCTACCTGTTGGTCATATCCGAGAAA CTTCCGGAGAAATCGAACGAGGNTTTGCTAAGTATCACTGTCTACCTGTT GGTCATATCCGAGAAACTTCCGGAGAAATCGAACGATGCTCCCATGCTAG GGATCTGTTTCATCACtatcttttatattttgattttcgcGTTAATGATG GCAGCCGGAACAACCATTTTTGCACGCCGGGTCACTAAGCCTCCGGAATG GCTATTAAATTTGACCACTAAAGGATgtttcaaattaaattccgaTGATT TGGCTGCCCGTAAAGTGAGGCCGGTGATGTCGAAGAAGTTTAGTTGTGGT CACATGCGACGTGGAACCGTAACAGAAAGCGACTTTACGTTAAAGAGCAA CGGAATGTTGAACGGAAATGGCGTCATCGTGAACGGGAACTGCCACGATG AGGCGGATCGAAACGCCATCCACCATCGCCGCCCCAACACGCCCAAAGTA TTCGAACAAGACAACCCTATGGAAAGAACAATCGAAGAAATGGAAGATCA GTATAATGATGATTGGATCAAAATTTGTCGAGCGTTGGATAAAAAGTTGT TTATCTTCTTTCTCATTGTAATCATCTTGATACCAATTATTGTCACTGTC AGTCTCGATAAAACTGGACTCGCGTAATGCTCGATAAAACTGGACTCGCG TAATGCTCGATAAAACTGGACTCGCGTAATGCTCGATAAAACTGGACTCG GTACTGCTCGCTAAAACTGGACCGTGTACTTTTTCATAAAATGCTACAAG GAGATTTACATCCAAGTTGTTTCTACAATATTGGGTATCCCAGGATCTTT ATTTCACTGGTACTAAGCCGAATGGATCGATTCATTCGTGCAGGGGTCGT ATCTACAATTACCTGGAAAATCCAGCGACCTGGTCAATCCAGAGGGTTGG GCCGATTTTCTAAAAACCTTGACATGGGAGGAccaaatcttttttaattt ataatgtGTCATTATAGAAAATTAATCTGATGTAAACTTGTATTCATTGT CcctaaaaaaagtgaaaaaatatcaactcaTAAAACATCATTACATTCAA AAGCATCAAAAAAGGGAATCAAAATGTGCGTCTTtgatgttgaaaaaaaa attgaaaactttcttCACTGACTTAAATCTTAAAAGAAGCAACTCGTCAC TACATAGGGTGCTTAAATAACTTCTTAATATTTATAATATTGTAATAATT TACTAAAAAAATgatacttttaaaaaattgctgTACATAAATATATCTAC tttattgaaacattcttcttcGTTAAAACCTTATATGATGGTCAATGATT CTCTGGTGCGCCAGAATATCCAACACCTCATACCGCCCCGTTCTCTGGTT ATTAAAATACAATCTATCGTCCACGACCTTCAGAGGGTTGAACCCCTCTT CGCGTAGCTTCACTTTCTTGTATTTGAAAGTTGACGTTTGTTCGATCGCG TCTCCGTTTGAAAGCCGTATGAATTGCGGACGTGCGTAGTTCGGTACTTT GTTCAACAATTCGTTACGTAAGTAAACAAGGTCCACAATGTAGTCGGGGT CTGCAATACAAGCCATGCCAGCTCTTCCCTCAATTCCTgtcaatgaaaaa ttcaaaattatactCCATTTCATTTATGTCAAAGTCAAACTTTGTACCCG TGTgttatcaaaaaaagtttaatttcgaCTCTACTTCTTATTTTCCCTCA CTTTGTGTCAAGTTTATGTGAAATGGTCTAATTTCTGGAATCTAGGCGTC GCGTCCTTGTCAACAATGCATTCTGGGTTCATTAGAGGTTTCATGTCTTT CAAAGTCAATTTAATGCTATGGTTAAAAAAACGGAAAGGTCTTGATNTTT CATGTCTTTCAAAGTCAATTGTATGCTATGGTTAAAAAACGGAAAGGTCT TGATTTCCCGAAAAAGCTTTTGCTCAT Run BLAST on NCBI protein sequence of TCONS_00020651-protein >TCONS_00020651-protein ID=TCONS_00020651-protein|Name=TCONS_00020651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MMSIDAFLIMNWFDPRLTWNKTLYNDTDKINLRGDKIWTPDIMLINRGNP VAKFHTELYISKVLVFNDGNAVWSNLVTLDVSCDLDVTWFPVDKQECSMK FGSWSYDRTQLSLVFLNKPNSTTGLKSDAFNIDSGEWVIEEFEAEETIVR FSCCPMPFSVISYTLSMSRVSLYYFMYILLPLVSLAFLFLLVFHIPADSG ERMGFGVTILLSITVYLLVISEKLPEKSNEXLLSITVYLLVISEKLPEKS NDAPMLGICFITIFYILIFALMMAAGTTIFARRVTKPPEWLLNLTTKGCF KLNSDDLAARKVRPVMSKKFSCGHMRRGTVTESDFTLKSNGMLNGNGVIV NGNCHDEADRNAIHHRRPNTPKVFEQDNPMERTIEEMEDQYNDDWIKICR ALDKKLFIFFLIVIILIPIIVTVSLDKTGLA Run BLAST on NCBI transcript from alignment at sc0000359:263988..273360- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020651 ID=TCONS_00020651|Name=TCONS_00020651|organism=Clytia hemisphaerica|type=transcript|length=9373bp|location=Sequence derived from alignment at sc0000359:263988..273360- (Clytia hemisphaerica) AACAGTGAAACAGGGGAATGTTATCACAACGAGTTCTTCTAATTCTGTTT
CTTTCTTTTTTTTTAGAATGTGAAAGAGCAAATGATGAGTATCGACGCCT
TTCTCATCATGGTAAGGAGATACTGGCTTTTTTTTAAGTTTGTAACTCTG
CTTCGATTTCAGAACATAACGAATACTTTCATTTTTTAAAGTAGTTGTGG
ATAGTAGGGCTATAACCTACGTAAACAGATATTATACATAGGGTGGTTCA
TAAAAACATTGTCCTGGTGTACAAAGTTAATACTCGCGGAAAACAATCCC
CTGAGATTTCAAATCTAATCTGTCTGAAATAATAACCTCTATACTATCCA
ATGCTATGTGTTCAGATACATAACCCCCTGAAAACTGTCTGAAATAATAA
CCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAAT
AATAACCTCTATACTATCCAATGCTAAGTGTTCAGATACATAATCTGTCT
GAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAGATACATAATC
TGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAGATACA
TAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAG
ATACATAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTG
TTCAGATACATAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCT
ATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCTATACTATCCA
ATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCTATACT
ATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCT
ATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATAC
CCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAAT
AATACCCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCT
GAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAGATACATAATC
TGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAGATACA
TAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAG
ATACATAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTG
TTCAGATACATAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCT
ATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCTATACTATCCA
ATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCTATACT
ATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCT
ATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATAC
CCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAAT
AATACCCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCT
GAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAGATACATAATC
TGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAGATACA
TAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAG
ATACATAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTG
TTCAGATACATAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCT
ATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCTATACTATCCA
ATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCTATACT
ATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCT
ATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATAC
CCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAAT
AATACCCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCT
GAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAGATACATAATC
TGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAGATACA
TAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAG
ATACATAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTG
TTCAGATACATAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCT
ATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCTATACTATCCA
ATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCTATACT
ATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCT
ATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATAC
CCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAAT
AATACCCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCT
GAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAGATACATAATC
TGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAGATACA
TAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTGTTCAG
ATACATAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCTATGTG
TTCAGATACATAATCTGTCTGAAATAATACCCTCTATACTATCCAATGCT
ATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCTATACTATCCA
ATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCTATACT
ATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATACCCTCT
ATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATAA
CCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAAT
AATAACCTCTATACTATCCAATCCCATGTGTTCAGATACATAATCTCCTG
AAATAATAACCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCT
GTCTGAAATAATAACCTCTATACTATCCAATGCTATCCATTAATAACCTC
TATACTATCCAATGCTATCCATTAATAACCTCTATACTATCCAATGCTAT
GAAATAATAACCTCTATACTATCCAATGCTATGAAATAATAACCTCTATA
CTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAATAACCT
CTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAAATAAT
AACCTCTATACTATCCAATGCTATGTGTTCAGATACATAATCTGTCTGAA
ATAATAACCTCTATACTATCCAATGCTATGTGTTCAGATACATAACCCAC
TGAAATAATAACCTCTATACTATCCAATGCTATGTGTTCAGATACATAAT
CTGTCTGAAATAATAACCTCTATACTATCCATAGACTATGTTATAGTCTA
AGACGAATCACTGTCAAAGAAAAAAGCCCAAAGCCGAAGAAAATTCGCAA
ACGGGTTTTTTTTGCCGAGAAGAGTTTACAGTCGTTTCTTCGAAACTCTC
CCGCCGATTTTTTTTCCGTATACCGCCATAACGCCATACCGCCATTTTCC
CCACCTTTACACTGTAACGGACGATAACATCGTCTATACTATCCAATGCT
ATGTGTTCAGATACATAATCTCCTGAAAGCAGCACGAATCCGTTACAGCA
GCCAAACATCTCAGCAATATTTTTTTGATCATTTCTTTCTATTCTTCCAG
AACTGGTTTGATCCTCGCTTGACGTGGAACAAAACATTGTACAACGATAC
AGACAAAATTAATTTGAGGGGAGACAAAATCTGGACACCTGATATTATGC
TCATCAATAGGTACCTTAAACGTTTTTGTTATAAGAAGATCCAAAAAATT
AAGCTTGCTTTCGTTGTACTTTACTTTTTGAGTTTTGATGTTTTTATTTT
TTTTACCATTTTANTTTAAACGTTTTTTTATAAAAAGATCCAAAAAAATT
TTAAGCCTTTGGGTGTTCTTAACCTTTTGAGTTTTAATGTTCTTATTTTT
GAAATTATTTTTGTGTGATTTGCTGAGAATTTTGGCGTTTTAGACCATGT
TCATACGTTACTGTTTCGTTCCGCTCCGGTATGATTTTCGTTATGGATCG
AGTGTGTTCATATTGATTTCGGAACGTTTCTGAGCATGAAAACGGAGCAG
TTCCGTTCCGATGAAAAAAGTGGAGCGAAACCGTTTCGATCTGTTTTCCT
TTGTAACGTGTTCTTTTTTGACGTTTCGAATTTTGAACAGAACGGAACCG
TAACGTCTGATAATGCTCTTAGAGCCCGTGAGAAGCCTTTAAATGATATT
AACATTCTTTTATAAAATATTATTTAAATATGTAAAACAGTCTGCCAAAT
TTGAGTAGCTTTTCGGAATTTAAAAATAGGATAAAGCAAGGTTTTTATCT
AAAAATAAGGGATTTCAAATCTGTTATTCATGTTTGTTTCACATTCTTTA
TTAGATTTTTCAACGCCAGGTAGTTTTTTGTTGTTTGGAATTTTTGTTTG
TTTTTTTCGACCTCATCAAAATCTCCTAGTCTCCTTCACTGAACTCAGCG
TCATAAAAAAATATCAAAAAACAAAGTTTAACCAGAAGAAGACTCTAGCT
TACACCGTTATTGGCAAAAAAGGAAGCTCTAGTGTAATGGAAATGTCAAT
CTTTGCTCTCGTCAAAGAAACAGTTCTATCAATATCTAACTCATTTCTTT
TGAAGAGATTTTAAATTTAAGTTCACCTTCACCTCGGGTTCCACATGGAC
TCTTAACTCAATGGTAGAGCAAATGTCCGCGAATGGCATGGTTGTGAATT
CGAGTCTCGCCGGATCCGTTGGTTTTCCAACGGTTCTGGTGGCTGGTCAG
AAGACAACATGAGAGCGACTGTATTCACTTCATTGTAATACATAAGGGCA
ATATTCACGATAAATATAATTCAAATAACAAGCAAAGAAATAGTTACAAA
ATTTCCACTTTTATTATTTCTTAGGGGTAATCCAGTGGCGAAATTCCACA
CGGAATTGTACATCTCAAAAGTTCTTGTGTTCAATGATGGCAATGCTGTG
TGGAGCAATCTGGTGACGTTAGATGTGTCATGTGACCTTGACGTCACGTG
GTTTCCTGTTGATAAACAGGTAAACAATATCAACAATCCCTTAACCCTCT
AAATCCAGGGCTTGTTTAGATTTTATATAAAAAATTGGATTTCTCTCTAG
TTTGTCTCAGGGCGTTGCATTGAAATACATCAACACCTTTCTATTCTACA
AGCCGACAGCCGCCTGTTTTCTTCGTACTCTGATGGAAATAAACGAGTTC
CTGCCAAACTAACTTAGTCTATATCAATTTCAGTCTCCATGATTAAAGAC
TGGGCAACCTGGGCTAACCTCATTTCTTCTTACTTTTCCACAGGAATGTT
CAATGAAGTTTGGTTCATGGTCGTACGATCGCACTCAACTTTCTCTCGTT
TTTCTCAACAAACCAAACAGTACCACTGGCCTCAAATCAGGTACGCATTT
TGTTCATTATCCTTCTGTTGTGTATTGCATCGAGAGAGTGATTAGCCTCA
TACTACTAGATTGTTAGCCTGGATATCCGAGCTGTAAATTATTTTCTTAT
TTCGATGTTTCTTTCTGCTATTTAAACCTTGGTCTACCTAGATATTTATA
AAGAATTATTTTTAAAGTCTGTTTCAAATTAGCTGACTGTGTTTTTTCAA
ATCTCAACAACTTTTAATAGNGTCAGCCGTTCCTTGTGAAGATTAGGTCT
AATTGATAGGGACTAAAAGGCAGACTTTTTGTGGCCCTTCGTGGAAACAG
TTGAATTTTCCGAAGCATGCCACGTAAAAATATTTGCTATTAGCGAGGTT
AAGTAAGTGTTTATTTAGACCGTTCAACGCGANTGTGTTTTTTCAAATCT
CAACAACTTTTAATAGAATTTGAATTAGTTAGCGGGTTTATGCTTGTTAA
AAAGATTATTTGGAGTGGAATATTATCAAAAAAGAAAAAAAATTGAAAAA
TGGAAAAACAAAGATGAAAAATGAAGAAGAAGAAAATCAACTTCTTGTAG
AATAATGCTATGATCTTTTATTTTGTATCAGAAACTCTTCAATCTCTTAA
AACGTCATAAATGCGAAAAAAGATTAAAAAACATTTAATTTAATAAAAAA
ATACGGCCTTAAACTTTGCCCTGGTTGACTTAATTAAAAAAGGGGTCTTT
CTTGTTGTTTTTTTGATGATTTTGAAGTCAATCAATGATAAATTTTGGAC
TATATCTTTCGACGGAATAAATTTTTTGAAAAATCTTTTCACATTAAGGT
ATGTGTTCACCTTTCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGGACTAAAAGGCAGACTTTTTGTGGCCCTTTGTGGAAACAG
TTGAATTTTCCGAAGCATGCCACGTAAAAATATTTGCTATTAGCGAGGTT
AAGTAAGTGTTTATTTAGACCGTTCAACGCGATACCGTAGGCCTGTAAAT
AACTTGCCAAAAGCATTTTCAGGCCTACGGTATCGCACTTTACGGTCAAA
ATAAACCCGTGCTTAACCTCGCTATTATTACTTTCGGCCGTCTAAATCTC
AGACGTTGATTTTAAAAATTGAATTTCTGAATATTTTCATTTCATTAATT
TTTCAACAGATGCTTTCAACATTGACAGTGGTGAATGGGTTATCGAAGAA
TTCGAAGCCGAAGAAACGATTGTCCGTTTCTCATGTTGTCCGATGCCTTT
TTCCGTCATCAGTTACACGTTATCTATGTCACGTGTCTCCCTCTATTACT
TCATGTACATCTTGTTACCGCTGGTGTCGTTGGCTTTCCTCTTTCTATTG
GTGTTTCACATCCCAGCAGACAGCGGTGAGCGGATGGGTTTTGGCGTCAC
CATCTTGCTTAGTATCACTGTCTACCTGTTGGTCATATCCGAGAAACTTC
CGGAGAAATCGAACGAGGNTTTGCTAAGTATCACTGTCTACCTGTTGGTC
ATATCCGAGAAACTTCCGGAGAAATCGAACGATGCTCCCATGCTAGGGAT
CTGTTTCATCACTATCTTTTATATTTTGATTTTCGCGTTAATGATGGCAG
CCGGAACAACCATTTTTGCACGCCGGGTCACTAAGCCTCCGGAATGGCTA
TTAAATTTGACCACTAAAGGATGTTTCAAATTAAATTCCGATGATTTGGC
TGCCCGTAAAGTGAGGCCGGTGATGTCGAAGAAGTTTAGTTGTGGTCACA
TGCGACGTGGAACCGTAACAGAAAGCGACTTTACGTTAAAGAGCAACGGA
ATGTTGAACGGAAATGGCGTCATCGTGAACGGGAACTGCCACGATGAGGC
GGATCGAAACGCCATCCACCATCGCCGCCCCAACACGCCCAAAGTATTCG
AACAAGACAACCCTATGGAAAGAACAATCGAAGAAATGGAAGATCAGTAT
AATGATGATTGGATCAAAATTTGTCGAGCGTTGGATAAAAAGTTGTTTAT
CTTCTTTCTCATTGTAATCATCTTGATACCAATTATTGTCACTGTCAGTC
TCGATAAAACTGGACTCGCGTAATGCTCGATAAAACTGGACTCGCGTAAT
GCTCGATAAAACTGGACTCGCGTAATGCTCGATAAAACTGGACTCGGTAC
TGCTCGCTAAAACTGGACCGTGTACTTTTTCATAAAATGCTACAAGGAGA
TTTACATCCAAGTTGTTTCTACAATATTGGGTATCCCAGGATCTTTATTT
CACTGGTACTAAGCCGAATGGATCGATTCATTCGTGCAGGGGTCGTATCT
ACAATTACCTGGAAAATCCAGCGACCTGGTCAATCCAGAGGGTTGGGCCG
ATTTTCTAAAAACCTTGACATGGGAGGACCAAATCTTTTTTAATTTATAA
TGTGTCATTATAGAAAATTAATCTGATGTAAACTTGTATTCATTGTCCCT
AAAAAAAGTGAAAAAATATCAACTCATAAAACATCATTACATTCAAAAGC
ATCAAAAAAGGGAATCAAAATGTGCGTCTTTGATGTTGAAAAAAAAATTG
AAAACTTTCTTCACTGACTTAAATCTTAAAAGAAGCAACTCGTCACTACA
TAGGGTGCTTAAATAACTTCTTAATATTTATAATATTGTAATAATTTACT
AAAAAAATGATACTTTTAAAAAATTGCTGTACATAAATATATCTACTTTA
TTGAAACATTCTTCTTCGTTAAAACCTTATATGATGGTCAATGATTCTCT
GGTGCGCCAGAATATCCAACACCTCATACCGCCCCGTTCTCTGGTTATTA
AAATACAATCTATCGTCCACGACCTTCAGAGGGTTGAACCCCTCTTCGCG
TAGCTTCACTTTCTTGTATTTGAAAGTTGACGTTTGTTCGATCGCGTCTC
CGTTTGAAAGCCGTATGAATTGCGGACGTGCGTAGTTCGGTACTTTGTTC
AACAATTCGTTACGTAAGTAAACAAGGTCCACAATGTAGTCGGGGTCTGC
AATACAAGCCATGCCAGCTCTTCCCTCAATTCCTGTCAATGAAAAATTCA
AAATTATACTCCATTTCATTTATGTCAAAGTCAAACTTTGTACCCGTGTG
TTATCAAAAAAAGTTTAATTTCGACTCTACTTCTTATTTTCCCTCACTTT
GTGTCAAGTTTATGTGAAATGGTCTAATTTCTGGAATCTAGGCGTCGCGT
CCTTGTCAACAATGCATTCTGGGTTCATTAGAGGTTTCATGTCTTTCAAA
GTCAATTTAATGCTATGGTTAAAAAAACGGAAAGGTCTTGATNTTTCATG
TCTTTCAAAGTCAATTGTATGCTATGGTTAAAAAACGGAAAGGTCTTGAT
TTCCCGAAAAAGCTTTTGCTCAT Coding sequence (CDS) from alignment at sc0000359:263988..273360- >TCONS_00020651 ID=TCONS_00020651|Name=TCONS_00020651|organism=Clytia hemisphaerica|type=CDS|length=6480bp|location=Sequence derived from alignment at sc0000359:263988..273360- (Clytia hemisphaerica) ATGCTTTCAACATTGACAGTGGTGAATGGGTTATCGAAGAATTCGAAGCC GAAGAAACGATTGTCCGTTTCTCATGTTGTCCGATGCCTTTTTCCGTCAT CAGTTACACGTTATCTATGTCACGTGTCTCCCTCTATTACTTCATGTACA TCTTGTTACCGCTGGTGTCGTTGGCTTTCCTCTTTCTATTGGTGTTTCAC ATCCCAGCAGACAGCGGTGAGCGGATGGGTTTTGGCGTCACCATCTTGCT TAGTATCACTGTCTACCTGTTGGTCATATCCGAGAAACTTCCGGAGAAAT CGAACGAGGNTTTGCTAAGTATCACTGTCTACCTGTTGGTCATATCCGAG AAACTTCCGGAGAAATCGAACGATGCTCCCATGCTAGGGATCTGTTTCAT CACTATCTTTTATATTTTGATTTTCGCGTTAATGATGGCAGCCGGAACAA CCATTTTTGCACGCCGGGTCACTAAGCCTCCGGAATGGCTATTAAATTTG ACCACTAAAGGATGTTTCAAATTAAATTCCGATGATTTGGCTGCCCGTAA AGTGAGGCCGGTGATGTCGAAGAAGTTTAGTTGTGGTCACATGCGACGTG GAACCGTAACAGAAAGCGACTTTACGTTAAAGAGCAACGGAATGTTGAAC GGAAATGGCGTCATCGTGAACGGGAACTGCCACGATGAGGCGGATCGAAA CGCCATCCACCATCGCCGCCCCAACACGCCCAAAGTATTCGAACAAGACA ACCCTATGGAAAGAACAATCGAAGAAATGGAAGATCAGTATAATGATGAT TGGATCAAAATTTGTCGAGCGTTGGATAAAAAGTTGTTTATCTTCTTTCT CATTGTAATCATCTTGATACCAATTATTGTCACTGTCAGTCTCGATAAAA CTGGACTCGCGTAAGAATGTTCAATGAAGTTTGGTTCATGGTCGTACGAT CGCACTCAACTTTCTCTCGTTTTTCTCAACAAACCAAACAGTACCACTGG CCTCAAATCAGGGGTAATCCAGTGGCGAAATTCCACACGGAATTGTACAT CTCAAAAGTTCTTGTGTTCAATGATGGCAATGCTGTGTGGAGCAATCTGG TGACGTTAGATGTGTCATGTGACCTTGACGTCACGTGGTTTCCTGTTGAT AAACAGAACTGGTTTGATCCTCGCTTGACGTGGAACAAAACATTGTACAA CGATACAGACAAAATTAATTTGAGGGGAGACAAAATCTGGACACCTGATA TTATGCTCATCAATAGATGATGAGTATCGACGCCTTTCTCATCATGATGC TTTCAACATTGACAGTGGTGAATGGGTTATCGAAGAATTCGAAGCCGAAG AAACGATTGTCCGTTTCTCATGTTGTCCGATGCCTTTTTCCGTCATCAGT TACACGTTATCTATGTCACGTGTCTCCCTCTATTACTTCATGTACATCTT GTTACCGCTGGTGTCGTTGGCTTTCCTCTTTCTATTGGTGTTTCACATCC CAGCAGACAGCGGTGAGCGGATGGGTTTTGGCGTCACCATCTTGCTTAGT ATCACTGTCTACCTGTTGGTCATATCCGAGAAACTTCCGGAGAAATCGAA CGAGGNTTTGCTAAGTATCACTGTCTACCTGTTGGTCATATCCGAGAAAC TTCCGGAGAAATCGAACGATGCTCCCATGCTAGGGATCTGTTTCATCACT ATCTTTTATATTTTGATTTTCGCGTTAATGATGGCAGCCGGAACAACCAT TTTTGCACGCCGGGTCACTAAGCCTCCGGAATGGCTATTAAATTTGACCA CTAAAGGATGTTTCAAATTAAATTCCGATGATTTGGCTGCCCGTAAAGTG AGGCCGGTGATGTCGAAGAAGTTTAGTTGTGGTCACATGCGACGTGGAAC CGTAACAGAAAGCGACTTTACGTTAAAGAGCAACGGAATGTTGAACGGAA ATGGCGTCATCGTGAACGGGAACTGCCACGATGAGGCGGATCGAAACGCC ATCCACCATCGCCGCCCCAACACGCCCAAAGTATTCGAACAAGACAACCC TATGGAAAGAACAATCGAAGAAATGGAAGATCAGTATAATGATGATTGGA TCAAAATTTGTCGAGCGTTGGATAAAAAGTTGTTTATCTTCTTTCTCATT GTAATCATCTTGATACCAATTATTGTCACTGTCAGTCTCGATAAAACTGG ACTCGCGTAAGAATGTTCAATGAAGTTTGGTTCATGGTCGTACGATCGCA CTCAACTTTCTCTCGTTTTTCTCAACAAACCAAACAGTACCACTGGCCTC AAATCAGGGGTAATCCAGTGGCGAAATTCCACACGGAATTGTACATCTCA AAAGTTCTTGTGTTCAATGATGGCAATGCTGTGTGGAGCAATCTGGTGAC GTTAGATGTGTCATGTGACCTTGACGTCACGTGGTTTCCTGTTGATAAAC AGAACTGGTTTGATCCTCGCTTGACGTGGAACAAAACATTGTACAACGAT ACAGACAAAATTAATTTGAGGGGAGACAAAATCTGGACACCTGATATTAT GCTCATCAATAGATGATGAGTATCGACGCCTTTCTCATCATGATGCTTTC AACATTGACAGTGGTGAATGGGTTATCGAAGAATTCGAAGCCGAAGAAAC GATTGTCCGTTTCTCATGTTGTCCGATGCCTTTTTCCGTCATCAGTTACA CGTTATCTATGTCACGTGTCTCCCTCTATTACTTCATGTACATCTTGTTA CCGCTGGTGTCGTTGGCTTTCCTCTTTCTATTGGTGTTTCACATCCCAGC AGACAGCGGTGAGCGGATGGGTTTTGGCGTCACCATCTTGCTTAGTATCA CTGTCTACCTGTTGGTCATATCCGAGAAACTTCCGGAGAAATCGAACGAG GNTTTGCTAAGTATCACTGTCTACCTGTTGGTCATATCCGAGAAACTTCC GGAGAAATCGAACGATGCTCCCATGCTAGGGATCTGTTTCATCACTATCT TTTATATTTTGATTTTCGCGTTAATGATGGCAGCCGGAACAACCATTTTT GCACGCCGGGTCACTAAGCCTCCGGAATGGCTATTAAATTTGACCACTAA AGGATGTTTCAAATTAAATTCCGATGATTTGGCTGCCCGTAAAGTGAGGC CGGTGATGTCGAAGAAGTTTAGTTGTGGTCACATGCGACGTGGAACCGTA ACAGAAAGCGACTTTACGTTAAAGAGCAACGGAATGTTGAACGGAAATGG CGTCATCGTGAACGGGAACTGCCACGATGAGGCGGATCGAAACGCCATCC ACCATCGCCGCCCCAACACGCCCAAAGTATTCGAACAAGACAACCCTATG GAAAGAACAATCGAAGAAATGGAAGATCAGTATAATGATGATTGGATCAA AATTTGTCGAGCGTTGGATAAAAAGTTGTTTATCTTCTTTCTCATTGTAA TCATCTTGATACCAATTATTGTCACTGTCAGTCTCGATAAAACTGGACTC GCGTAAGAATGTTCAATGAAGTTTGGTTCATGGTCGTACGATCGCACTCA ACTTTCTCTCGTTTTTCTCAACAAACCAAACAGTACCACTGGCCTCAAAT CAGGGGTAATCCAGTGGCGAAATTCCACACGGAATTGTACATCTCAAAAG TTCTTGTGTTCAATGATGGCAATGCTGTGTGGAGCAATCTGGTGACGTTA GATGTGTCATGTGACCTTGACGTCACGTGGTTTCCTGTTGATAAACAGAA CTGGTTTGATCCTCGCTTGACGTGGAACAAAACATTGTACAACGATACAG ACAAAATTAATTTGAGGGGAGACAAAATCTGGACACCTGATATTATGCTC ATCAATAGATGATGAGTATCGACGCCTTTCTCATCATGATGCTTTCAACA TTGACAGTGGTGAATGGGTTATCGAAGAATTCGAAGCCGAAGAAACGATT GTCCGTTTCTCATGTTGTCCGATGCCTTTTTCCGTCATCAGTTACACGTT ATCTATGTCACGTGTCTCCCTCTATTACTTCATGTACATCTTGTTACCGC TGGTGTCGTTGGCTTTCCTCTTTCTATTGGTGTTTCACATCCCAGCAGAC AGCGGTGAGCGGATGGGTTTTGGCGTCACCATCTTGCTTAGTATCACTGT CTACCTGTTGGTCATATCCGAGAAACTTCCGGAGAAATCGAACGAGGNTT TGCTAAGTATCACTGTCTACCTGTTGGTCATATCCGAGAAACTTCCGGAG AAATCGAACGATGCTCCCATGCTAGGGATCTGTTTCATCACTATCTTTTA TATTTTGATTTTCGCGTTAATGATGGCAGCCGGAACAACCATTTTTGCAC GCCGGGTCACTAAGCCTCCGGAATGGCTATTAAATTTGACCACTAAAGGA TGTTTCAAATTAAATTCCGATGATTTGGCTGCCCGTAAAGTGAGGCCGGT GATGTCGAAGAAGTTTAGTTGTGGTCACATGCGACGTGGAACCGTAACAG AAAGCGACTTTACGTTAAAGAGCAACGGAATGTTGAACGGAAATGGCGTC ATCGTGAACGGGAACTGCCACGATGAGGCGGATCGAAACGCCATCCACCA TCGCCGCCCCAACACGCCCAAAGTATTCGAACAAGACAACCCTATGGAAA GAACAATCGAAGAAATGGAAGATCAGTATAATGATGATTGGATCAAAATT TGTCGAGCGTTGGATAAAAAGTTGTTTATCTTCTTTCTCATTGTAATCAT CTTGATACCAATTATTGTCACTGTCAGTCTCGATAAAACTGGACTCGCGT AAGAATGTTCAATGAAGTTTGGTTCATGGTCGTACGATCGCACTCAACTT TCTCTCGTTTTTCTCAACAAACCAAACAGTACCACTGGCCTCAAATCAGG GGTAATCCAGTGGCGAAATTCCACACGGAATTGTACATCTCAAAAGTTCT TGTGTTCAATGATGGCAATGCTGTGTGGAGCAATCTGGTGACGTTAGATG TGTCATGTGACCTTGACGTCACGTGGTTTCCTGTTGATAAACAGAACTGG TTTGATCCTCGCTTGACGTGGAACAAAACATTGTACAACGATACAGACAA AATTAATTTGAGGGGAGACAAAATCTGGACACCTGATATTATGCTCATCA ATAGATGATGAGTATCGACGCCTTTCTCATCATGATGCTTTCAACATTGA CAGTGGTGAATGGGTTATCGAAGAATTCGAAGCCGAAGAAACGATTGTCC GTTTCTCATGTTGTCCGATGCCTTTTTCCGTCATCAGTTACACGTTATCT ATGTCACGTGTCTCCCTCTATTACTTCATGTACATCTTGTTACCGCTGGT GTCGTTGGCTTTCCTCTTTCTATTGGTGTTTCACATCCCAGCAGACAGCG GTGAGCGGATGGGTTTTGGCGTCACCATCTTGCTTAGTATCACTGTCTAC CTGTTGGTCATATCCGAGAAACTTCCGGAGAAATCGAACGAGGNTTTGCT AAGTATCACTGTCTACCTGTTGGTCATATCCGAGAAACTTCCGGAGAAAT CGAACGATGCTCCCATGCTAGGGATCTGTTTCATCACTATCTTTTATATT TTGATTTTCGCGTTAATGATGGCAGCCGGAACAACCATTTTTGCACGCCG GGTCACTAAGCCTCCGGAATGGCTATTAAATTTGACCACTAAAGGATGTT TCAAATTAAATTCCGATGATTTGGCTGCCCGTAAAGTGAGGCCGGTGATG TCGAAGAAGTTTAGTTGTGGTCACATGCGACGTGGAACCGTAACAGAAAG CGACTTTACGTTAAAGAGCAACGGAATGTTGAACGGAAATGGCGTCATCG TGAACGGGAACTGCCACGATGAGGCGGATCGAAACGCCATCCACCATCGC CGCCCCAACACGCCCAAAGTATTCGAACAAGACAACCCTATGGAAAGAAC AATCGAAGAAATGGAAGATCAGTATAATGATGATTGGATCAAAATTTGTC GAGCGTTGGATAAAAAGTTGTTTATCTTCTTTCTCATTGTAATCATCTTG ATACCAATTATTGTCACTGTCAGTCTCGATAAAACTGGACTCGCGTAAGA ATGTTCAATGAAGTTTGGTTCATGGTCGTACGATCGCACTCAACTTTCTC TCGTTTTTCTCAACAAACCAAACAGTACCACTGGCCTCAAATCAGGGGTA ATCCAGTGGCGAAATTCCACACGGAATTGTACATCTCAAAAGTTCTTGTG TTCAATGATGGCAATGCTGTGTGGAGCAATCTGGTGACGTTAGATGTGTC ATGTGACCTTGACGTCACGTGGTTTCCTGTTGATAAACAGAACTGGTTTG ATCCTCGCTTGACGTGGAACAAAACATTGTACAACGATACAGACAAAATT AATTTGAGGGGAGACAAAATCTGGACACCTGATATTATGCTCATCAATAG ATGATGAGTATCGACGCCTTTCTCATCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00020651-exon-sc0000359-1575043694:273250..273360 | TCONS_00020651-exon-sc0000359-1575043694:273250..273360 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1575043694:269201..269310 | TCONS_00020651-exon-sc0000359-1575043694:269201..269310 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1575043694:267892..268036 | TCONS_00020651-exon-sc0000359-1575043694:267892..268036 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1575043694:267521..267617 | TCONS_00020651-exon-sc0000359-1575043694:267521..267617 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1575043694:263988..266201 | TCONS_00020651-exon-sc0000359-1575043694:263988..266201 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1510915933:273250..273360 | TCONS_00020651-exon-sc0000359-1510915933:273250..273360 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1510915933:269201..269310 | TCONS_00020651-exon-sc0000359-1510915933:269201..269310 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1510915933:267892..268036 | TCONS_00020651-exon-sc0000359-1510915933:267892..268036 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1510915933:267521..267617 | TCONS_00020651-exon-sc0000359-1510915933:267521..267617 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1510915933:263988..266201 | TCONS_00020651-exon-sc0000359-1510915933:263988..266201 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1491911889:273250..273360 | TCONS_00020651-exon-sc0000359-1491911889:273250..273360 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1491911889:269201..269310 | TCONS_00020651-exon-sc0000359-1491911889:269201..269310 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1491911889:267892..268036 | TCONS_00020651-exon-sc0000359-1491911889:267892..268036 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1491911889:267521..267617 | TCONS_00020651-exon-sc0000359-1491911889:267521..267617 | Clytia hemisphaerica | exon |
| TCONS_00020651-exon-sc0000359-1491911889:263988..266201 | TCONS_00020651-exon-sc0000359-1491911889:263988..266201 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000359 | supercontig | sc0000359:263988..273360 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
| GO:0006811 | ion transport |
Vocabulary: Molecular Function
| Term | Definition |
| GO:0005216 | ion channel activity |
| GO:0005230 | extracellular ligand-gated ion channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005230 |
extracellular ligand-gated ion channel activity |
| molecular_function |
GO:0005216 |
ion channel activity |
Blast
BLAST of TCONS_00020651 vs. Swiss-Prot (Human)
Match: ACHA3 (Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4) HSP 1 Score: 140.198 bits (352), Expect = 8.080e-35 Identity = 118/427 (27.63%), Postives = 201/427 (47.07%), Query Frame = 1
Query: 79 QMMSIDAFLIMNWFDPRLTWNKTLYNDTDKINLRGDKIWTPDIMLINRGNPVAKFHTELYISKVLVFNDGNAVWSNLVTLDVSCDLDVTWFPVDKQECSMKFGSWSYDRTQLSLVFLNKPNSTTGLKSDAFNIDSGEWVIEEFEAEETIVRFSCCPMPFSVISYTLSMSRVSLYYFMYIXXXXXXXXXXXXXXXHIPADSGERMGFGVTILLSITVYLLVISEKLPEKS------NEXLL----------SITVYLLVISEKLPEKSNDAPMLGICFITIFYILIFALMMAAGTTIFARRVTKP-PEWLLNLTTKGCFKLNSDDLAARKVRPVMSKKFSCGHMRRGTVTESDFTLKSNGMLNGNGVIVNGNCHDEADRNAIHHRRPNTPKVFEQDNPMERTIEEMEDQ-----YNDDWIKICRALDK 1293
Q+M + +L W D +L WN + Y + + + KIW PDI+L N N V F + +K L+ G W SC +DVT+FP D Q C+MKFGSWSYD+ ++ LV + S+ LK +SGEW I + + ++++CC + I+Y+L + R+ L+Y + +++P + ++FL +LVF++P+D GE++ +++LLS+TV+LLVI+E +P S E LL ITV++L + + P + T+F L+ +M T KP P + L+ CF ++ ++ P H RR ++ N + + + + D A+ +P++ E ++ E M+ Q DDW + +D+
Sbjct: 79 QIMETNLWLKQIWNDYKLKWNPSDYGGAEFMRVPAQKIWKPDIVLYN--NAVGDFQVDDK-TKALLKYTGEVTWIPPAIFKSSCKIDVTYFPFDYQNCTMKFGSWSYDKAKIDLVLI---GSSMNLKD---YWESGEWAIIKAPGYKHDIKYNCCEEIYPDITYSLYIRRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHYRTPTTHTMPSWVK----TVFLNLLPRVMFMTRPTSNEGNAQKPRPLYGAELSNLNCFS-RAESKGCKEGYPCQDGMCGYCHHRRIKIS------------NFSANLTRSSSSESVD--AVLSLSALSPEIKEAIQSVKYIAENMKAQNEAKEIQDDWKYVAMVIDR 477
The following BLAST results are available for this feature:
|