TCONS_00020641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020641
Unique NameTCONS_00020641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length907

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020641 ID=TCONS_00020641|Name=TCONS_00020641|organism=Clytia hemisphaerica|type=transcript|length=907bp
TCGGTATTGCAGTGCTATCTATAAATTAGGTGCTAGCAAAATGACAGGTT
CCAACGCCTCTAGAAACAATTGGACACTTTATCGACATGTAGCCAGTAGC
GAACCATGTGCTTTCCACGTGAGATTCCCGCCATTTTCATAGGCAAGTGT
GACTTTGAACACTGATAAAAAGTTCGTCTCTAATAGCAACGGATCAGCTA
AACAGGATAGCtccaaaatgtaaacattccaaatCAAAGATGGCCACACA
CTACAGCGCAAATCAGtaCGAAAATGCTTTTGCTGCCAATCGACTTCAAA
ACTATCAAGTCCCAAATGACTTCAAAGAGCACCCAACAGCGCGAAAAGGT
TGCACCAAAATCATCAGCAACAATCGTGGCCATCTTCTCGACAATGTTCC
ACGCTCTAAACAATCTCCCTGGGGAACTTTCAAGGGAACTTGGGATGATC
ACCTAGGGCTTCAAAAGAACCCTGCTAAAGAGACTCCCTCAAAAGAAACC
AGTAACCGATTAAAATCACCATCACCCGAACAAAATGAAAAGAGTGTAGT
TGATGAAGAAGTTATACAGCCCACTCAACATAAGGAACAAATTGTGGAAT
GAAACTTTTTTCCCTAATACAAAAACACtatcaatcaaatttatttaaat
ttttagatttttattttgttggtcCCTcttttttgcataaattattttta
aaacatttttgtaCATATTGctctatttttttgatttttaatttactGTG
ACATGCAGTATAGGCTATAATAAATACAAATGAACTGAAAAAAACTGATT
TGACCGTAATTCGATCATTCAGTGAGCATTGGTTCTGACATGCTTACGCT
ACTTTGAGAACCACGGCGCTTTTATCATAACAGTACTGTTTGTTGTGACA
Aaaggaa
Run BLAST on NCBI

protein sequence of TCONS_00020641-protein

>TCONS_00020641-protein ID=TCONS_00020641-protein|Name=TCONS_00020641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MATHYSANQYENAFAANRLQNYQVPNDFKEHPTARKGCTKIISNNRGHLL
DNVPRSKQSPWGTFKGTWDDHLGLQKNPAKETPSKETSNRLKSPSPEQNE
KSVVDEEVIQPTQHKEQIVE
Run BLAST on NCBI

transcript from alignment at sc0000359:46857..48521-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020641 ID=TCONS_00020641|Name=TCONS_00020641|organism=Clytia hemisphaerica|type=transcript|length=1665bp|location=Sequence derived from alignment at sc0000359:46857..48521- (Clytia hemisphaerica)
TCGGTATTGCAGTGCTATCTATAAATTAGGTGCTAGCAAAATGACAGGTT
NATCGGTATTGCAGTACTATCTATAAATTAGGTGCTAGCAAATATGACAG
GTTCCAACGCCTCTAGAAACAATTGGACACTTTATCGACATGTAGCCAGT
AGCGAACCATGTGCTTTCCACGTGAGATTCCCGCCATTTTCATAGGCAAG
TGTGACTTTGAACACTGATAAAAAGTTCGTCTCTAATAGCAACGGATCAG
CTAAACAGGATAGCTCCAAAATGTAAACATTCCAAATCAAAGATGGCCAC
ACACTACAGCGCAAATCAGGTGACTTTTTTTGCTTGGAAAATTATCTGAG
AGTAGAGAAATGTTTTCTTGAACAAACTGAAGAAATTAATTGAAGGTTTC
TGACAATGTTAGCTGAATTGAAGTTGTATTTGATATTATCTTACTAATTG
GTATACAACATCACGAGATGTAAAATATTGGACGTCTACCTTTCGAAAAA
ATTAGCTAATTTTATGCCAGAAAGAAAGCACTTTACACCCTTTCAGTGTA
GCGTCGCCTGCCTCAATTGTTCTTTTTCACCATATCTTTTTATCAAGCCA
TGTACTGTAATCCCCTTGTAATAATATTATCCCTACAAAATTTTATCAGA
TCTTGAATATTTATATTTTTAAATTTTTGTTTTATTTTAGTACGAAAATG
CTTTTGCTGCCAATCGACTTCAAAACTATCAAGTCCCAAATGACTTCAAA
GAGGTATTATTTTACGCAATATCTTGCATTCACGTGTACCCATATACAAA
AGTATGTGGCATGACTTGACTTTCTTAAATTCGAACTATATACTTTAGTA
CCTTTGTTAACCCCTGCTGTGGTGAAGATAACCCGTCCCTTTTTCCCTTC
CCTTATTCCCTTCTCATCTAATTTCTACGTACACAGCCCCACCAATATCC
GCTTTGATTATTTTATTAACCACAAATACAGTCCATTGATTTGAAATTAT
GATTTTAAGATTAATAGCTTTTGATAAAAAGGCTCTGAAACAATTTTGTA
TTTAAATCTAGTAAAATATTTTTACTCGTATTTCTAGCACCCAACAGCGC
GAAAAGGTTGCACCAAAATCATCAGCAACAATCGTGGCCATCTTCTCGAC
AATGTTCCACGCTCTAAACAATCTCCCTGGGGAACTTTCAAGGGAACTTG
GGATGATCACCTAGGGCTTCAAAAGAACCCTGCTAAAGAGACTCCCTCAA
AAGAAACCAGTAACCGATTAAAATCACCATCACCCGAACAAAATGAAAAG
AGTGTAGTTGATGAAGAAGTTATACAGCCCACTCAACATAAGGAACAAAT
TGTGGAATGAAACTTTTTTCCCTAATACAAAAACACTATCAATCAAATTT
ATTTAAATTTTTAGATTTTTATTTTGTTGGTCCCTCTTTTTTGCATAAAT
TATTTTTAAAACATTTTTGTACATATTGCTCTATTTTTTTGATTTTTAAT
TTACTGTGACATGCAGTATAGGCTATAATAAATACAAATGAACTGAAAAA
AACTGATTTGACCGTAATTCGATCATTCAGTGAGCATTGGTTCTGACATG
CTTACGCTACTTTGAGAACCACGGCGCTTTTATCATAACAGTACTGTTTG
TTGTGACAAAAGGAA

Coding sequence (CDS) from alignment at sc0000359:46857..48521-

>TCONS_00020641 ID=TCONS_00020641|Name=TCONS_00020641|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at sc0000359:46857..48521- (Clytia hemisphaerica)
CACCCAACAGCGCGAAAAGGTTGCACCAAAATCATCAGCAACAATCGTGG
CCATCTTCTCGACAATGTTCCACGCTCTAAACAATCTCCCTGGGGAACTT
TCAAGGGAACTTGGGATGATCACCTAGGGCTTCAAAAGAACCCTGCTAAA
GAGACTCCCTCAAAAGAAACCAGTAACCGATTAAAATCACCATCACCCGA
ACAAAATGAAAAGAGTGTAGTTGATGAAGAAGTTATACAGCCCACTCAAC
ATAAGGAACAAATTGTGGAATGATACGAAAATGCTTTTGCTGCCAATCGA
CTTCAAAACTATCAAGTCCCAAATGACTTCAAAGAGATGGCCACACACTA
CAGCGCAAATCAGCACCCAACAGCGCGAAAAGGTTGCACCAAAATCATCA
GCAACAATCGTGGCCATCTTCTCGACAATGTTCCACGCTCTAAACAATCT
CCCTGGGGAACTTTCAAGGGAACTTGGGATGATCACCTAGGGCTTCAAAA
GAACCCTGCTAAAGAGACTCCCTCAAAAGAAACCAGTAACCGATTAAAAT
CACCATCACCCGAACAAAATGAAAAGAGTGTAGTTGATGAAGAAGTTATA
CAGCCCACTCAACATAAGGAACAAATTGTGGAATGATACGAAAATGCTTT
TGCTGCCAATCGACTTCAAAACTATCAAGTCCCAAATGACTTCAAAGAGA
TGGCCACACACTACAGCGCAAATCAGCACCCAACAGCGCGAAAAGGTTGC
ACCAAAATCATCAGCAACAATCGTGGCCATCTTCTCGACAATGTTCCACG
CTCTAAACAATCTCCCTGGGGAACTTTCAAGGGAACTTGGGATGATCACC
TAGGGCTTCAAAAGAACCCTGCTAAAGAGACTCCCTCAAAAGAAACCAGT
AACCGATTAAAATCACCATCACCCGAACAAAATGAAAAGAGTGTAGTTGA
TGAAGAAGTTATACAGCCCACTCAACATAAGGAACAAATTGTGGAATGAT
ACGAAAATGCTTTTGCTGCCAATCGACTTCAAAACTATCAAGTCCCAAAT
GACTTCAAAGAGATGGCCACACACTACAGCGCAAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011579XLOC_011579Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020641-proteinTCONS_00020641-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020641-exon-sc0000359-1575043694:48475..48521TCONS_00020641-exon-sc0000359-1575043694:48475..48521Clytia hemisphaericaexon
TCONS_00020641-exon-sc0000359-1575043694:48203..48421TCONS_00020641-exon-sc0000359-1575043694:48203..48421Clytia hemisphaericaexon
TCONS_00020641-exon-sc0000359-1575043694:47769..47831TCONS_00020641-exon-sc0000359-1575043694:47769..47831Clytia hemisphaericaexon
TCONS_00020641-exon-sc0000359-1575043694:46857..47434TCONS_00020641-exon-sc0000359-1575043694:46857..47434Clytia hemisphaericaexon
TCONS_00020641-exon-sc0000359-1510915933:48475..48521TCONS_00020641-exon-sc0000359-1510915933:48475..48521Clytia hemisphaericaexon
TCONS_00020641-exon-sc0000359-1510915933:48203..48421TCONS_00020641-exon-sc0000359-1510915933:48203..48421Clytia hemisphaericaexon
TCONS_00020641-exon-sc0000359-1510915933:47769..47831TCONS_00020641-exon-sc0000359-1510915933:47769..47831Clytia hemisphaericaexon
TCONS_00020641-exon-sc0000359-1510915933:46857..47434TCONS_00020641-exon-sc0000359-1510915933:46857..47434Clytia hemisphaericaexon
TCONS_00020641-exon-sc0000359-1491911889:48475..48521TCONS_00020641-exon-sc0000359-1491911889:48475..48521Clytia hemisphaericaexon
TCONS_00020641-exon-sc0000359-1491911889:48203..48421TCONS_00020641-exon-sc0000359-1491911889:48203..48421Clytia hemisphaericaexon
TCONS_00020641-exon-sc0000359-1491911889:47769..47831TCONS_00020641-exon-sc0000359-1491911889:47769..47831Clytia hemisphaericaexon
TCONS_00020641-exon-sc0000359-1491911889:46857..47434TCONS_00020641-exon-sc0000359-1491911889:46857..47434Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:46857..48521 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.271	22.6905	13.1752	10.9761	314.548	235.073	112.854	112.255	63.776	63.3993	68.2827	65.7385	15.8202	18.7464	17.2881	20.9997	9.61536	17.4028	42.0173	33.641	20.143	20.4227	21.7372	21.2438	46.5493	34.9798	37.3565	52.5125	14.9499	12.8175
Blast
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BLAST of TCONS_00020641 vs. Swiss-Prot (Human)
Match: FLTOP (Protein Flattop OS=Homo sapiens GN=CFAP126 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.523e-21
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 3 
Query:  240 MATHYSANQYENAFAANRLQNYQVPNDFKEHPTARKGCTKIISNNRGHLLDNVPRSKQSPWGTFKGTWDDHLGLQKNPAKETPSKETS 503
            MAT+YSANQYE AF++  LQN+      KE  ++ +G T+II+N+RGHLL +VPRSK +PWG+F GTW   + L+  PA+ T +  T+
Sbjct:    1 MATNYSANQYEKAFSSKYLQNWSPTKPTKESISSHEGYTQIIANDRGHLLPSVPRSKANPWGSFMGTW--QMPLKIPPARVTLTSRTT 86
The following BLAST results are available for this feature:
BLAST of TCONS_00020641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLTOP5.523e-2150.00Protein Flattop OS=Homo sapiens GN=CFAP126 PE=2 SV... [more]
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