TCONS_00020596 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020596
Unique NameTCONS_00020596
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2948

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020596 ID=TCONS_00020596|Name=TCONS_00020596|organism=Clytia hemisphaerica|type=transcript|length=2948bp
CTCtacaaaatatcaacaaaagtACCTCCACCCTGAAATGTCAATGCCAG
GCCTTGgatgtattttttttcaaagttagaATTGAAACCGCCTAGCgaat
aaaatcgaaaaaaaaatcaagttaaaactatttttaatGACGTTTTGAAT
GAAATATGCAGCGAAATTAACTCaaatattgtaaaaataaactgaaatgg
gcaaacaaattttgacaatttgAAAAGATACAAAATAATATTGCACTATT
ACGAGGAACTTAAATGCGTTCTGCTCACCGAACAAAaacaatgttaaaaa
aattaaacaaaatataGGAATGGCTGGAAGATCGtctttttttagtgaaa
atcacGATtgttcagaatttttcaaagttaCTTTATGATCGGCAATCACA
AATGAGCCTCGTATTCAGATTCACTTTCATCTCCAGTTTCAACAAATGAA
CTTTCGATACTCTTCTTTACAATAAGGAGGTTAGTCGTACACCGCAGCAT
AAAGTTACGGCTGTGGAAAGATGGGTCGTCTTGGTTTTCTCCTTCCACTA
CAATAACTGTTGGCCATTCGAAGCCTAAACACGCCTTTTCACTGATGACC
AAAACATTACCGTCTTGAAGAAATAAGTATGGATTATCCTCTTGGAAATC
ATCTTGCAGTGAGTGGTACGCCTTCCATGGTTCCGTAATCTGCTCGGACA
CTCTGTAATTCTCTACTTCATCTTCAATGATCACCAAGATCCCACCCTTT
GTTCGTTTTCGCGCTTCGTCCATTGCTTCCTCTAACAAATCTACGAATAT
CGGTGTGCAGCCTGCTGGGAAATTTTCGGGAGGCATAACGATTCCTTCTT
TGTAGTCGTATTCCGTGTCTTCAGCATGTGATTTTGTCATTTTCACGATT
TCTTTCGAATTACGGAAATTCTGCGAAAGATCGAGAAAAGTGAATTCGTC
TTCCCATTCTTGGTCATCTATGAACCGTAACTCGAGTGTCGAAGGTACAA
TCCACAAAATAACGACCAACTCGTACATTTTTCGGATCCATTCCTTTAAG
CTCACGTCGAACTCATCGCAGAAAATTGCTTTGATATCATCTTGACGGAT
TTGTTCCAGAATTTGCTCAAAGTTCGAAAACTTCTTCAGTTTAATCTTTG
TTGTATCTTCATTTTCCGCATCTAGTTCAAACTTCATTCGAAAATACAGT
AAGCCATTTTCTTGTAGATACATGATTTTTCCCTTGTATTCTGGCTGTTG
GTTTAATTGAATGGCTTTGTCTTTTAATAAGATACTTTTTCCCACACCAA
ATGGGCCACAAATCATCAATTTGTTGTAGCGAGGATCGTTGCTATTCAGT
GCTGCCATCTGTTGATTGGAATAAAAAAGAATATTGTTGCTAGTTGAAAC
ATTTTCGATAGCTTCTGCGATGTACTCCACCCAGTTTGAGCTGGTTATTG
GTGCAACGAGGTCCTTCTTGGAAACGTGGATCGAAAATACGATTATCTTC
AACAGCTTTTGAACTTGATCGAGTGGAGTTGGTTTTTGAGCGAATTGAAC
GATTGGGTAATTATCAAGGATGCTCGTTAACCATGGCTTTATTTCAGTCC
CCATGGTGATGAAGTGGTTACTAGCGATTGAAATGGAACTGTTTTGGACA
CAGACAACGGGGAAGAATGTCCATCCCGGTTTAAGTTGGTCTCCCAATCT
CTCTTCGAATAATTCATGGTTCGATTCCAATTGTTGGAAAACTCGATCGT
TGGCGAGCTCGCGTTTCATCTCTATGGAAATAATGAGTTGTTTTTTCCAT
GAAAtgatcaaaaaatcaatttctttgtGCTTCTTGTTTTGAACATTTGT
TAAAAAATGGACAGATGAAAGAACAACTGTGTCATGGAGAATATCATCTT
TAAGCGGTAATATTTGGTCGTAGAACCAATGTTCAAGTTGTTCTCCCAAT
TCTGACAACTCCAATCCGAAAATCCAGCAAAGATTTGAATCCTGTGGTGG
GTTAGCctcaatcttttgttttaacaGCTTTTTGAAGTTCTTCTTTAGAA
CAGATTCTCTCAGAAAAGTCTTCAGTGCTGGTTCTGGTGATGTTGATGGA
ATTTCATTGATGCAAGCTTGAACAAAAACACCAATTTCCGACATTGTTGA
TGGTAAATCCATTTTGTCGGATTTCAGCTCTTCAATAACTAAATACATGA
TTTTGAGGTTCACCACCCATGGATCGAACGCCTTCTTATCGATATAATCG
ACTTCGTCGTCTTCGCTGTcatcgtcgtcgtcgtcgtcatTGTCGTCGGC
ATTGTCGTCTTCGTCGTCGGCATTGTCGTCTTCGTTGTCTTCACTGTCGT
TGTCGTTGTCGttgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgttg
CTGTCGTCTTCGCTGTTGTCCTCTTCGTCGTCCTCCCCATTCTTTGCTTG
CAAGAacgattttaattcttttgttaacCAGTAATCTGGTGAATGTTGTT
TCAAATTGTCCAAAAGTCTATCAATATCTTTCTTGACTTTATACTCAAGA
ATAGCTACATGTGGCTTTTTCATGTATTGGCTGGAGACAAACGTTGGAGG
TATGAAGACAGCTTCATGTACATCGTTCTTGAAAAGTGAAGAATCACCGT
ACTCTCTTTGAAGGAGAAACTTGGCAGCTTCGATCGGATCGGCCAACTTG
AGGGTATTTCCCAAATTAAATTGTTTAGCTTGACGATTCAATGCAGTTTG
GTTGTTTCTCATGATCTGGCAGTATAACGATTTGTTTGGATCACACTTTA
AAGGATCGATTGGTTTTGGTTGCAATAATGATAATTTTTGTGCGATAGTT
TGAACACCAGTGGTACTCGCCATCCTGTTTTaacatcaatttaaaaaaaa
tacaactcAACTCAAATACAAACTTTCCCTCTCTCTTACCACCGTCTG
Run BLAST on NCBI

transcript from alignment at sc0000359:107463..110843+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020596 ID=TCONS_00020596|Name=TCONS_00020596|organism=Clytia hemisphaerica|type=transcript|length=3381bp|location=Sequence derived from alignment at sc0000359:107463..110843+ (Clytia hemisphaerica)
CTCtacaaaatatcaacaaaagtACCTCCACCCTGAAATGTCAATGCCAG
GCCTTGgatgtattttttttcaaagttagaATTGAAACCGCCTAGCgaat
aaaatcgaaaaaaaaatcaagttaaaactatttttaatGACGTTTTGAAT
GAAATATGCAGCGAAATTAACTCaaatattgtaaaaataaactgaaatgg
gcaaacaaattttgacaatttgAAAAGATACAAAATAATATTGCACTATT
ACGAGGAACTTAAATGCGTTCTGCTCACCGAACAAAaacaatgttaaaaa
aattaaacaaaatataGGAATGGCTGGAAGATCGtctttttttagtgaaa
atcacGATtgttcagaatttttcaaagttaCTTTATGATCGGCAATCACA
AATGAGCCTCGTATTCAGATTCACTTTCATCTCCAGTTTCAACAAATGAA
CTTTCGATACTCTTCTTTACAATAAGGAGGTTAGTCGTACACCGCAGCAT
AAAGTTACGGCTGTGGAAAGATGGGTCGTCTTGGTTTTCTCCTTCCACTA
CAATAACTGTTGGCCATTCGAAGCCTAAACACGCCTTTTCACTGATGACC
AAAACATTACCGTCTTGAAGAAATAAGTATGGATTATCCTCTTGGAAATC
ATCTTGCAGTGAGTGGTACGCCTTCCATGGTTCCGTAATCTGCTCGGACA
CTCTGTAATTCTCTACTTCATCTTCAATGATCACCAAGATCCCACCCTTT
GTTCGTTTTCGCGCTTCGTCCATTGCTTCCTCTAACAAATCTACGAATAT
CGGTGTGCAGCCTGCTGGGAAATTTTCGGGAGGCATAACGATTCCTTCTT
TGTAGTCGTATTCCGTGTCTTCAGCATGTGATTTTGTCATTTTCACGATT
TCTTTCGAATTACGGAAATTCTGCGAAAGATCGAGAAAAGTGAATTCGTC
TTCCCATTCTTGGTCATCTATGAACCGTAACTCGAGTGTCGAAGGTACAA
TCCACAAAATAACGACCAACTCGTACATTTTTCGGATCCATTCCTTTAAG
CTCACGTCGAACTCATCGCAGAAAATTGCTTTGATATCATCTTGACGGAT
TTGTTCCAGAATTTGCTCAAAGTTATCGTTCTATAAAAGAAATTCCAGAA
GATAAAAAGAGGTTGAAATGATCTGAAAGGTTTAAAATCTCATAAAAGCT
TGATTTATTATTCATTTGATTAAAAGATCAACAGTTCCGTCTATGTCTGA
AATCTGAAACCGGTAACTGTTTTTCAGTTTCGGCAAAAATTGAGGCTCGA
TGCACTTATTTTTGTACCAGATTGCTGAGGCTCGAGCTCTCAAATTAGAA
GATATTTTTCACTATCCCGTAAAGCAAAAGCTTTTAAGATAATCTAAGCA
TTGGCAAATGATAGCCCTTGATCCAATAAGCCAAAATATGGTAAATATAA
AAATGAGCTAGAATAAAGCAACCCCAGCCCTGAACCAAAAATTGAAGCTG
CTTATATAAAAGAATTGTATAAGGTAGATTTGATtagaaaaaatagtttg
aaattaCCGAAAACTTCTTCAGTTTAATCTTTGTTGTATCTTCATTTTCC
GCATCTAGTTCAAACTTCATTCGAAAATACAGTAAGCCATTTTCTTGTAG
ATACATGATTTTTCCCTTGTATTCTGGCTGTTGGTTTAATTGAATGGCTT
TGTCTTTTAATAAGATACTTTTTCCCACACCAAATGGGCCACAAATCATC
AATTTGTTGTAGCGAGGATCGTTGCTATTCAGTGCTGCCATCTGTTGATT
GGAATAAAAAAGAATATTGTTGCTAGTTGAAACATTTTCGATAGCTTCTG
CGATGTACTCCACCCAGTTTGAGCTGGTTATTGGTGCAACGAGGTCCTTC
TTGGAAACGTGGATCGAAAATACGATTATCTTCAACAGCTTTTGAACTTG
ATCGAGTGGAGTTGGTTTTTGAGCGAATTGAACGATTGGGTAATTATCAA
GGATGCTCGTTAACCATGGCTTTATTTCAGTCCCCATGGTGATGAAGTGG
TTACTAGCGATTGAAATGGAACTGTTTTGGACACAGACAACGGGGAAGAA
TGTCCATCCCGGTTTAAGTTGGTCTCCCAATCTCTCTTCGAATAATTCAT
GGTTCGATTCCAATTGTTGGAAAACTCGATCGTTGGCGAGCTCGCGTTTC
ATCTCTATGGAAATAATGAGTTGTTTTTTCCATGAAAtgatcaaaaaatc
aatttctttgtGCTTCTTGTTTTGAACATTTGTTAAAAAATGGACAGATG
AAAGAACAACTGTGTCATGGAGAATATCATCTTTAAGCGGTAATATTTGG
TCGTAGAACCAATGTTCAAGTTGTTCTCCCAATTCTGACAACTCCAATCC
GAAAATCCAGCAAAGATTTGAATCCTGTGGTGGGTTAGCctcaatctttt
gttttaacaGCTTTTTGAAGTTCTTCTTTAGAACAGATTCTCTCAGAAAA
GTCTTCAGTGCTGGTTCTGGTGATGTTGATGGAATTTCATTGATGCAAGC
TTGAACAAAAACACCAATTTCCGACATTGTTGATGGTAAATCCATTTTGT
CGGATTTCAGCTCTTCAATAACTAAATACATGATTTTGAGGTTCACCACC
CATGGATCGAACGCCTTCTTATCGATATAATCGACTTCGTCGTCTTCGCT
GTcatcgtcgtcgtcgtcgtcatTGTCGTCGGCATTGTCGTCTTCGTCGT
CGGCATTGTCGTCTTCGTTGTCTTCACTGTCGTTGTCGTTGTCGttgtcg
tcgtcgtcgtcgtcgtcgtcgtcgtcgtcgttgCTGTCGTCTTCGCTGTT
GTCCTCTTCGTCGTCCTCCCCATTCTTTGCTTGCAAGAacgattttaatt
cttttgttaacCAGTAATCTGGTGAATGTTGTTTCAAATTGTCCAAAAGT
CTATCAATATCTTTCTTGACTTTATACTCAAGAATAGCTACATGTGGCTT
TTTCATGTATTGGCTGGAGACAAACGTTGGAGGTATGAAGACAGCTTCAT
GTACATCGTTCTTGAAAAGTGAAGAATCACCGTACTCTCTTTGAAGGAGA
AACTTGGCAGCTTCGATCGGATCGGCCAACTTGAGGGTATTTCCCAAATT
AAATTGTTTAGCTTGACGATTCAATGCAGTTTGGTTGTTTCTCATGATCT
GGCAGTATAACGATTTGTTTGGATCACACTTTAAAGGATCGATTGGTTTT
GGTTGCAATAATGATAATTTTTGTGCGATAGTTTGAACACCAGTGGTACT
CGCCATCCTGTTTTaacatcaatttaaaaaaaatacaactcAACTCAAAT
ACAAACTTTCCCTCTCTCTTACCACCGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011567XLOC_011567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020596-exon-sc0000359-1491911889:107463..108586TCONS_00020596-exon-sc0000359-1491911889:107463..108586Clytia hemisphaericaexon
TCONS_00020596-exon-sc0000359-1510915933:107463..108586TCONS_00020596-exon-sc0000359-1510915933:107463..108586Clytia hemisphaericaexon
TCONS_00020596-exon-sc0000359-1575043694:107463..108586TCONS_00020596-exon-sc0000359-1575043694:107463..108586Clytia hemisphaericaexon
TCONS_00020596-exon-sc0000359-1491911889:109020..110843TCONS_00020596-exon-sc0000359-1491911889:109020..110843Clytia hemisphaericaexon
TCONS_00020596-exon-sc0000359-1510915933:109020..110843TCONS_00020596-exon-sc0000359-1510915933:109020..110843Clytia hemisphaericaexon
TCONS_00020596-exon-sc0000359-1575043694:109020..110843TCONS_00020596-exon-sc0000359-1575043694:109020..110843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000359supercontigsc0000359:107463..110843 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.122542	0.215223	0	0	0	0	0.327452	0.565952	0.564286	0.229156	1.28834	0.420252	0.933975	1.65199	2.28355	2.30051	0.382879	0.773345	0.486212	1.11597	0.230156	1.53333	2.16673	2.00519	1.20292	1.78977	2.1613	1.62979
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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