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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020590 ID=TCONS_00020590|Name=TCONS_00020590|organism=Clytia hemisphaerica|type=transcript|length=2998bpRun BLAST on NCBI protein sequence of TCONS_00020590-protein >TCONS_00020590-protein ID=TCONS_00020590-protein|Name=TCONS_00020590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=570bp MSSSALPLLASRGSEGVKLIHSENGFLQQSDLFCDEEAKGKIMKFSEDGGRun BLAST on NCBI transcript from alignment at sc0000359:4260..46285+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020590 ID=TCONS_00020590|Name=TCONS_00020590|organism=Clytia hemisphaerica|type=transcript|length=42026bp|location=Sequence derived from alignment at sc0000359:4260..46285+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000359:4260..46285+ >TCONS_00020590 ID=TCONS_00020590|Name=TCONS_00020590|organism=Clytia hemisphaerica|type=CDS|length=32547bp|location=Sequence derived from alignment at sc0000359:4260..46285+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020590 vs. Swiss-Prot (Human)
Match: EIF2A (Eukaryotic translation initiation factor 2A OS=Homo sapiens GN=EIF2A PE=1 SV=3) HSP 1 Score: 482.641 bits (1241), Expect = 6.437e-158 Identity = 263/568 (46.30%), Postives = 365/568 (64.26%), Query Frame = 3
Query: 231 PLLASRGSEGVKLIHSENGFLQQSDLFCDEEAKG-KIMKFSEDGGLFGFCNGQKLKVLDMSDGGTAFETPKQKTLYIKFSPKNTYLACWELFYTSPQLPEGFDNFEIFNIXXXXXXXXXXXXXQSAWEPRWSKDEKICGRCVSNEIQFHQDGDFSTVAHKLHIQGIENFTISPAQHAPYIVAVYIPGKKGAPSCVRMFQYPNF-GNGQAITNKSFFKSDKVDMFWNNKGTGMLVLVSAEVDTTGKTYYGEQSLHFMTSKGESSLVPLDKKGPIYSVEWHPDSSHFCVVYGYMPAKAALFNMKAEPIFDFGTGARSTCSYNAHGNILCLAGFGNLPGEMEMWNVEARKLVCKPKASDTTFFQWCPDGQHLVTATCAPRLRVNNGYKIWHYTGKVVATFNVKPNGELFEAFWQNQPKENYPAPKVSTTAY-VEVKQQ------AYRPPSARGQPVKKLAIHEHEKPSNQRVDQQQN-------MSXXXXXXXXXXXXXXXXXXXXXEPGPVP-PSSTNQSAGSAAPSGDLETDXXXXXXXXXXRQIEDLKTKQKEGKTLEKNQLDKIASE 1883
PLL RGSEG+ +++ F +S +F E K K+ FS+DG LF + NG+K+ ++ +++ G K + ++FSPKNT LA W+ + TS G N +++++KT +K KK W P WS+DE +C R V+NE+ F ++ +F+T+A+KLH+Q I +F +SP PY VAVY+PG KGAPS VR++QYPNF G A+ NKSFFK+DKV M WN K T +LV+ S +VD TG +YYGEQ+LH++ + GES++V L K GPIY V W+ S+ FC VYG+MPAKA +FN+K +P+FDFGTG R+ Y+ HG+IL LAGFGNL G+ME+W+V+ KL+ KP ASD+T+F WCPDG+H++TATCAPRLRVNNGYKIWHYTG ++ ++V N EL++ WQ +PA ++ A EV + AYRPP+ R +P+ +HE E P N + + + KK + ++ + P P P ST ++ S + SGD E DKKIK LKKKL+ IE LK + GK LEKNQL+KI E
Sbjct: 6 PLLTVRGSEGLYMVNGPPHF-TESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQ-PYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKE 571 The following BLAST results are available for this feature:
BLAST of TCONS_00020590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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