TCONS_00020590-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020590-protein
Unique Name	TCONS_00020590-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	570

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020590-protein ID=TCONS_00020590-protein|Name=TCONS_00020590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=570bp
MSSSALPLLASRGSEGVKLIHSENGFLQQSDLFCDEEAKGKIMKFSEDGG
LFGFCNGQKLKVLDMSDGGTAFETPKQKTLYIKFSPKNTYLACWELFYTS
PQLPEGFDNFEIFNIKTKAVVKKLKHKKQSAWEPRWSKDEKICGRCVSNE
IQFHQDGDFSTVAHKLHIQGIENFTISPAQHAPYIVAVYIPGKKGAPSCV
RMFQYPNFGNGQAITNKSFFKSDKVDMFWNNKGTGMLVLVSAEVDTTGKT
YYGEQSLHFMTSKGESSLVPLDKKGPIYSVEWHPDSSHFCVVYGYMPAKA
ALFNMKAEPIFDFGTGARSTCSYNAHGNILCLAGFGNLPGEMEMWNVEAR
KLVCKPKASDTTFFQWCPDGQHLVTATCAPRLRVNNGYKIWHYTGKVVAT
FNVKPNGELFEAFWQNQPKENYPAPKVSTTAYVEVKQQAYRPPSARGQPV
KKLAIHEHEKPSNQRVDQQQNMSANALKNKKKREAKARAKQETAEPGPVP
PSSTNQSAGSAAPSGDLETDKKIKGLKKKLRQIEDLKTKQKEGKTLEKNQ
LDKIASEKEILDQLSQLQVS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011563	XLOC_011563	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020590	TCONS_00020590	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom
IPR013979	TIF_beta_prop-like
IPR011387	TIF2A

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0003743	translation initiation factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003743	translation initiation factor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 475..495
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 476..546
None	No IPR available	SUPERFAMILY	82171	DPP6 N-terminal domain-like	coord: 43..390
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 3..149 e-value: 2.6E-6 score: 26.1
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 259..566 e-value: 1.2E-11 score: 43.7
IPR013979	Translation initiation factor, beta propellor-like domain	PFAM	PF08662	eIF2A	coord: 217..403 e-value: 2.1E-69 score: 233.2
IPR011387	Translation initiation factor 2A	PIRSF	PIRSF017222	Transl_init_eIF2A	coord: 1..570 e-value: 2.0E-163 score: 543.1

Blast

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BLAST of TCONS_00020590-protein vs. Swiss-Prot (Human)
Match: EIF2A (Eukaryotic translation initiation factor 2A OS=Homo sapiens GN=EIF2A PE=1 SV=3)

HSP 1 Score: 523.857 bits (1348), Expect = 0.000e+0
Identity = 274/568 (48.24%), Postives = 376/568 (66.20%), Query Frame = 0

Query:    7 PLLASRGSEGVKLIHSENGFLQQSDLFCDEEAKG-KIMKFSEDGGLFGFCNGQKLKVLDMSDGGTAFETPKQKTLYIKFSPKNTYLACWELFYTSPQLPEGFDNFEIFNIKTKAVVKKLKHKKQSAWEPRWSKDEKICGRCVSNEIQFHQDGDFSTVAHKLHIQGIENFTISPAQHAPYIVAVYIPGKKGAPSCVRMFQYPNF-GNGQAITNKSFFKSDKVDMFWNNKGTGMLVLVSAEVDTTGKTYYGEQSLHFMTSKGESSLVPLDKKGPIYSVEWHPDSSHFCVVYGYMPAKAALFNMKAEPIFDFGTGARSTCSYNAHGNILCLAGFGNLPGEMEMWNVEARKLVCKPKASDTTFFQWCPDGQHLVTATCAPRLRVNNGYKIWHYTGKVVATFNVKPNGELFEAFWQNQPKENYPAPKVSTTAY-VEVKQQ------AYRPPSARGQPVKKLAIHEHEKPSNQRVDQQQN--MSANALKNKKKREAKARAKQE-----TAEPGPVP-PSSTNQSAGSAAPSGDLETDKKIKGLKKKLRQIEDLKTKQKEGKTLEKNQLDKIASE 557
            PLL  RGSEG+ +++    F  +S +F  E  K  K+  FS+DG LF + NG+K+ ++ +++ G        K + ++FSPKNT LA W+ + TS     G  N +++++KT   +K    KK   W P WS+DE +C R V+NE+ F ++ +F+T+A+KLH+Q I +F +SP    PY VAVY+PG KGAPS VR++QYPNF G   A+ NKSFFK+DKV M WN K T +LV+ S +VD TG +YYGEQ+LH++ + GES++V L K GPIY V W+  S+ FC VYG+MPAKA +FN+K +P+FDFGTG R+   Y+ HG+IL LAGFGNL G+ME+W+V+  KL+ KP ASD+T+F WCPDG+H++TATCAPRLRVNNGYKIWHYTG ++  ++V  N EL++  WQ      +PA  ++  A   EV  +      AYRPP+ R +P+    +HE E P N +     +  +S  ALKN++K EAK  AKQE     + +  P P P ST ++  S + SGD E DKKIK LKKKL+ IE LK +   GK LEKNQL+KI  E
Sbjct:    6 PLLTVRGSEGLYMVNGPPHF-TESTVFPRESGKNCKVCIFSKDGTLFAWGNGEKVNIISVTNKGLLHSFDLLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQNWCPSWSEDETLCARNVNNEVHFFENNNFNTIANKLHLQKINDFVLSPGPQ-PYKVAVYVPGSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSILHKYDVPSNAELWQVSWQPFLDGIFPAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEEPPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAKQEARSDKSPDLAPTPAPQSTPRNTVSQSISGDPEIDKKIKNLKKKLKAIEQLKEQAATGKQLEKNQLEKIQKE 571

The following BLAST results are available for this feature:

BLAST of TCONS_00020590-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020590-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EIF2A	0.000e+0	48.24	Eukaryotic translation initiation factor 2A OS=Hom...	[more]

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TCONS_00020590-protein (polypeptide) - C. hemisphaerica