TCONS_00020582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020582
Unique NameTCONS_00020582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length755

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020582 ID=TCONS_00020582|Name=TCONS_00020582|organism=Clytia hemisphaerica|type=transcript|length=755bp
TGATATCAGATCTTTCCAATTATTTGGTCTCATCAGAAGGAGAAATGTTG
GCTTACGCAATCCATGAAAACATAGATTGTAGAGATTGGTTGGAACGTGG
ATACAATCAATCAGGCGTTTACTGGATCTACCACAATCGTtacaaattca
aagttttttgtGAAATGTTACCCCAATGGGGTACTGCATGGATATGCCTC
CAAACTCGATTTGACGGTTCAGTTGATTTCAATCGAAATTGGGAAGATTA
TAAAAACGGTTTTGGAAATGTTGACGGTGAACATTGGTTAGGTCTTGAAA
ATATACACAAATTAACCCATGGACGACATatggaaatcaaaattgaaGCT
TATACTTTTGAAGGTTCGAGAAATTgggtaaattttttcaatttctctaT
TGAGAATGAATCAAATTATTACCGACTGAACGCCGGTGTAAAAGACCGTG
GAAATTTCGAGGCTGATTGGCTATCAATGGATGGTATGGAATTTTCTACA
GCGGATGTCGATCGAGATCTTGTTGAGAACGTTAATTGTGCTGTAGATTT
TCCATCTGGGTGGTGGCACGCGGGTTGTTTTATGATGAATTTGAATGGTG
TTTATCGAAATACTCCGACACTTCCCAGTTCTGCACAAGGTATTGTTTGG
AAGTCTTGGAAGACGTGGTATGTATCATTAAAAAAAGCTTCAATGATGAT
CCGTAGGCCTTCTTTATAATTATTCGTTATGCAAGTGATATCTGCTTAGG
Tcttg
Run BLAST on NCBI

protein sequence of TCONS_00020582-protein

>TCONS_00020582-protein ID=TCONS_00020582-protein|Name=TCONS_00020582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
ISDLSNYLVSSEGEMLAYAIHENIDCRDWLERGYNQSGVYWIYHNRYKFK
VFCEMLPQWGTAWICLQTRFDGSVDFNRNWEDYKNGFGNVDGEHWLGLEN
IHKLTHGRHMEIKIEAYTFEGSRNWVNFFNFSIENESNYYRLNAGVKDRG
NFEADWLSMDGMEFSTADVDRDLVENVNCAVDFPSGWWHAGCFMMNLNGV
YRNTPTLPSSAQGIVWKSWKTWYVSLKKASMMIRRPSL
Run BLAST on NCBI

transcript from alignment at sc0000358:257615..258369

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020582 ID=TCONS_00020582|Name=TCONS_00020582|organism=Clytia hemisphaerica|type=transcript|length=755bp|location=Sequence derived from alignment at sc0000358:257615..258369 (Clytia hemisphaerica)
caagACCTAAGCAGATATCACTTGCATAACGAATAATTATAAAGAAGGCC
TACGGATCATCATTGAAGCTTTTTTTAATGATACATACCACGTCTTCCAA
GACTTCCAAACAATACCTTGTGCAGAACTGGGAAGTGTCGGAGTATTTCG
ATAAACACCATTCAAATTCATCATAAAACAACCCGCGTGCCACCACCCAG
ATGGAAAATCTACAGCACAATTAACGTTCTCAACAAGATCTCGATCGACA
TCCGCTGTAGAAAATTCCATACCATCCATTGATAGCCAATCAGCCTCGAA
ATTTCCACGGTCTTTTACACCGGCGTTCAGTCGGTAATAATTTGATTCAT
TCTCAAtagagaaattgaaaaaatttacccAATTTCTCGAACCTTCAAAA
GTATAAGCttcaattttgatttccatATGTCGTCCATGGGTTAATTTGTG
TATATTTTCAAGACCTAACCAATGTTCACCGTCAACATTTCCAAAACCGT
TTTTATAATCTTCCCAATTTCGATTGAAATCAACTGAACCGTCAAATCGA
GTTTGGAGGCATATCCATGCAGTACCCCATTGGGGTAACATTTCacaaaa
aactttgaatttgtaACGATTGTGGTAGATCCAGTAAACGCCTGATTGAT
TGTATCCACGTTCCAACCAATCTCTACAATCTATGTTTTCATGGATTGCG
TAAGCCAACATTTCTCCTTCTGATGAGACCAAATAATTGGAAAGATCTGA
TATCA

Coding sequence (CDS) from alignment at sc0000358:257615..258369

>TCONS_00020582 ID=TCONS_00020582|Name=TCONS_00020582|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at sc0000358:257615..258369 (Clytia hemisphaerica)
TTATAAAGAAGGCCTACGGATCATCATTGAAGCTTTTTTTAATGATACAT
ACCACGTCTTCCAAGACTTCCAAACAATACCTTGTGCAGAACTGGGAAGT
GTCGGAGTATTTCGATAAACACCATTCAAATTCATCATAAAACAACCCGC
GTGCCACCACCCAGATGGAAAATCTACAGCACAATTAACGTTCTCAACAA
GATCTCGATCGACATCCGCTGTAGAAAATTCCATACCATCCATTGATAGC
CAATCAGCCTCGAAATTTCCACGGTCTTTTACACCGGCGTTCAGTCGGTA
ATAATTTGATTCATTCTCAAtagagaaattgaaaaaatttacccAATTTC
TCGAACCTTCAAAAGTATAAGCttcaattttgatttccatATGTCGTCCA
TGGGTTAATTTGTGTATATTTTCAAGACCTAACCAATGTTCACCGTCAAC
ATTTCCAAAACCGTTTTTATAATCTTCCCAATTTCGATTGAAATCAACTG
AACCGTCAAATCGAGTTTGGAGGCATATCCATGCAGTACCCCATTGGGGT
AACATTTCacaaaaaactttgaatttgtaACGATTGTGGTAGATCCAGTA
AACGCCTGATTGATTGTATCCACGTTCCAACCAATCTCTACAATCTATGT
TTTCATGGATTGCGTAAGCCAACATTTCTCCTTCTGATGAGACCAAATAA
TTGGAAAGATCTGATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011555XLOC_011555Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020582-proteinTCONS_00020582-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020582-exon-sc0000358-1491911889:257615..258369TCONS_00020582-exon-sc0000358-1491911889:257615..258369Clytia hemisphaericaexon
TCONS_00020582-exon-sc0000358-1510915933:257615..258369TCONS_00020582-exon-sc0000358-1510915933:257615..258369Clytia hemisphaericaexon
TCONS_00020582-exon-sc0000358-1575043694:257615..258369TCONS_00020582-exon-sc0000358-1575043694:257615..258369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000358supercontigsc0000358:257615..258369 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.779731	0.76036	1.17713	1.87142	1.13914	0.900161	0.75185	1.01671	0.273777	0.474763	0.65831	0.562571	5.44503	5.02642	1.73413	2.53411	0.195114	0.849937	5.59488	6.36059	1.19366	1.47088	1.04303	1.15146	1.60456	1.93013	1.33646	0.475434	0.93756	0.808268
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
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BLAST of TCONS_00020582 vs. Swiss-Prot (Human)
Match: MFAP4 (Microfibril-associated glycoprotein 4 OS=Homo sapiens GN=MFAP4 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 9.884e-39
Identity = 89/227 (39.21%), Postives = 114/227 (50.22%), Query Frame = 3 
Query:   54 YAIHENIDCRDWLERGYNQSGVYWIYHN--RYKFKVFCEMLPQWGTAWICLQTRFDGSVDFNRNWEDYKNGFGNVDGEHWLGLENIHKLTHGRHMEIKIEAYTFEGSRNWVX------XXXXXXXXXXXYYRLNAGVKDRGNFEADWLSM-DGMEFSTADVDRDLVENVNCAVDFPSGWWHAGCFMMNLNGVYRNTPTLPSSAQGIVWKSWKTWYVSLKKASMMIRR 707
            + + + +DC D   +GY   GVY IY +       VFC+M  + G  W   Q RF+GSV F R W DYK GFG  DGE+WLGL+N+H LT  +  E++++   FE +  +          N     E  Y    AG +D G    D LS   G +FST D D+DL    NCA      +W   C   NLNG Y     L S A GI W  WK +Y SLK+  M IRR
Sbjct:   33 FCLQQPLDCDDIYAQGYQSDGVYLIYPSGPSVPVPVFCDMTTE-GGKWTVFQKRFNGSVSFFRGWNDYKLGFGRADGEYWLGLQNMHLLTLKQKYELRVDLEDFENNTAYAKYADFSISPNAVSAEEDGYTLFVAGFEDGG--AGDSLSYHSGQKFSTFDRDQDLFVQ-NCAALSSGAFWFRSCHFANLNGFYLGGSHL-SYANGINWAQWKGFYYSLKRTEMKIRR 254
The following BLAST results are available for this feature:
BLAST of TCONS_00020582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFAP49.884e-3939.21Microfibril-associated glycoprotein 4 OS=Homo sapi... [more]
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