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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020575 ID=TCONS_00020575|Name=TCONS_00020575|organism=Clytia hemisphaerica|type=transcript|length=3020bpRun BLAST on NCBI protein sequence of TCONS_00020575-protein >TCONS_00020575-protein ID=TCONS_00020575-protein|Name=TCONS_00020575-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp MVEKYMKIFSCVVFLYTLCQNAFAKTDSNNVMPSDVLVIIRNMHFERSILRun BLAST on NCBI transcript from alignment at sc0000358:240328..262406- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020575 ID=TCONS_00020575|Name=TCONS_00020575|organism=Clytia hemisphaerica|type=transcript|length=22079bp|location=Sequence derived from alignment at sc0000358:240328..262406- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000358:240328..262406- >TCONS_00020575 ID=TCONS_00020575|Name=TCONS_00020575|organism=Clytia hemisphaerica|type=CDS|length=19992bp|location=Sequence derived from alignment at sc0000358:240328..262406- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020575 vs. Swiss-Prot (Human)
Match: B3GLT (Beta-1,3-glucosyltransferase OS=Homo sapiens GN=B3GLCT PE=1 SV=2) HSP 1 Score: 385.185 bits (988), Expect = 7.110e-122 Identity = 195/446 (43.72%), Postives = 281/446 (63.00%), Query Frame = 1
Query: 208 NNVMPSDVLVIIRNMHFERSILKAQKIKDSIMQAANALDKTGMEVLMMHEDWFQYGSWTILPIINRIHKKYGSSKKWIYFCEDTTQVDLKGLLKVLGRFQEGKNWFLGHGLHDSEPSIIHHFAFHNDLKSFKFPDFDAGWALSMPLVNELKERLESNPPDYGFSIDVKHEVAKFIYNDGKGTRLTNVPQFCINSALKKDHCVSTVAKEIPDC-GLVDENEIFIAVKTCKKFHDERVPVVKKTVGKHAKHIRYYSDVADESIPTEYIDVGNTERGHCQKLHNIIKRSTDEEWRDKEWLVVIDDDTIMSYDRLRRHLACYESKKPVLLGERYAYALNFRKAGYEYPTGGGGMIMNRAAINELIKSGCKCYKADEPDDMWLGNCFNRMQIPMVHSNSLHQARPSQYTKEFLSHRFLVSFHKHHMVDPMQVYQDYLQAGGEDPNVQSEKE 1542
N++ ++ +I++ +A+++K SI++ A L + VL++H+ Q G+WTILP++ Y + WI+FCE+ T++ + LL+ L R+ K WFLG LHD E +IIHH+AF + FK+PDF AGWALS+PLVN+L +RL+S F+ID+KHE+A +I++ G G LT VP+FC N +C +T +P C V + +IF+AVKTCKKFH +R+P+VK+T A I YYSD + SIPT + + NT+RGHC K I++R + WLV++DDDT++S RL+ L+CY+S +PV LGERY Y L GY Y TGGGGM+ +R A+ L+ S C+CY D PDDM LG CF+ + IP+ HS HQARP Y K++LSH+ +SFHKH +DP++VY +L ED Q ++
Sbjct: 51 NDIDLKGIVFVIQSQSNSFHAKRAEQLKKSILKQAADLTQELPSVLLLHQLAKQEGAWTILPLLPHFSVTYSRNSSWIFFCEEETRIQIPKLLETLRRYDPSKEWFLGKALHDEEATIIHHYAFSENPTVFKYPDFAAGWALSIPLVNKLTKRLKSESLKSDFTIDLKHEIALYIWDKGGGPPLTPVPEFCTNDV--DFYCATTFHSFLPLCRKPVKKKDIFVAVKTCKKFHGDRIPIVKQTWESQASLIEYYSDYTENSIPTVDLGIPNTDRGHCGKTFAILERFLNRSQDKTAWLVIVDDDTLISISRLQHLLSCYDSGEPVFLGERYGYGLG--TGGYSYITGGGGMVFSREAVRRLLASKCRCYSNDAPDDMVLGMCFSGLGIPVTHSPLFHQARPVDYPKDYLSHQVPISFHKHWNIDPVKVYFTWLAPSDEDKARQETQK 492 The following BLAST results are available for this feature:
BLAST of TCONS_00020575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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