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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020562 ID=TCONS_00020562|Name=TCONS_00020562|organism=Clytia hemisphaerica|type=transcript|length=1561bp CTTtatgtttttgtatttgatttagaaaaaaaagcaaaaattcaaaatga gaaCCATTGAAATTACGCCAAATCCGTCAATGATGGATGAAGAAATTCAG ATTGTGATAAAAAATCTATATTCTGGACAACACATTACAGTGTACAGTCA AGTTCAAGAGAGGAAAACACTTTTTAGATCCCATGCTCATTTCATAGCAG ACTTAAATGGGGTGGTTAATTTAGCTTCAGATAATTCTTTTGGTGGATGC TACACTGGCGTTTCACCAATGGGAATATTATGGAGCTTACAACCTGTAAA TGAAAAAGGGGGATTTAAACCAGCCAGATATTTGCCAAGGAAAGTGATGG ATCCACAAGAATTTGTTTTGAGAGTTTATGATGGGCATCTCAATATGAAA GAGATTGATCGATATCACAAGGAAGGGAAATTACTAGCAGAAGACACAGT TTTACGTAAATTTTGCTCCGATGGTATAATGCGTCACGAGGTCAACCATG GAAGATTGAGAGGTGTCATATTTAAACCAAAAGGACCAGGCCCTTTTAAA GggGTGATTGATATGTACGGTGGAAATGGTGGTATAGTTGAATTTCGTGC TGCATTGCTAGCATCACATGGTTTTGTTGCTTACACTCTTCCCTACTTCA AATATAAAGATCTTCCAGAAGATATTCCTGACGTTGAAATTGAATACTTC ATTGAAGCTATCCAATATTTTCAAACACTTGATTATGTACATCCAGGGAT TTCGTTGATAGGGCTTTCCTTTGGTGGTGGGCTTATTGTGTTCCTGTCAA CTATGGCGAACCTTGGAATCACTGGTGTGGTTCCTATTGGTGCACCACAT TATATTCAATTCCCCATGAAATGGAAGGGGGGATTCTACCCTGACCCACA aaaatgtgatttgactgattTTGATGGCTGTGATTTTGAACCAGATGAAT ATGGTGGTATTTATGGTGCATCTTTAATCTACGGCGAGTCTTGTGACCAT TACACGACTCCAATAGAGAAATGTTCGAAAAGCACGAAATATCTTTTCAT AGTTGGATTACAAGATGGTAATATAGATGCTAAGAGatcttttgaagttt tgaaTCAACGAATGATAAAACATAATAAGGAAAATCAAGTGATAGCTCTT GTTTATCCAAAAACGGGACATTTTGTTGACCCACCCCATATGCCACAGAC TGTGTTTGGACTTTACTTTGCCCAATACGATACAATATTTCGTTGTGGAG GTACTCTACAAGAGAATAATGCAGCCTGTAGACATTCATGGAAAGCTATG CTTCAATTTTTGAACAGAAATACTGGTTCCTCTAGTAAgttgtaatacac ttttttaaaagaacatccaaactttttgaagcctttggatgttcttaact ttttgagttttaagcctataaATTTTCgacgtgttcttatttttgccttt ttttcgagtatttttgtccattttcctacgaaattcggtgttctagagtc tgtaaagccttaaaatgttcttaacttgtttttaacattttggctatcaa agccttatgtt Run BLAST on NCBI protein sequence of TCONS_00020562-protein >TCONS_00020562-protein ID=TCONS_00020562-protein|Name=TCONS_00020562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MRTIEITPNPSMMDEEIQIVIKNLYSGQHITVYSQVQERKTLFRSHAHFI ADLNGVVNLASDNSFGGCYTGVSPMGILWSLQPVNEKGGFKPARYLPRKV MDPQEFVLRVYDGHLNMKEIDRYHKEGKLLAEDTVLRKFCSDGIMRHEVN HGRLRGVIFKPKGPGPFKGVIDMYGGNGGIVEFRAALLASHGFVAYTLPY FKYKDLPEDIPDVEIEYFIEAIQYFQTLDYVHPGISLIGLSFGGGLIVFL STMANLGITGVVPIGAPHYIQFPMKWKGGFYPDPQKCDLTDFDGCDFEPD EYGGIYGASLIYGESCDHYTTPIEKCSKSTKYLFIVGLQDGNIDAKRSFE VLNQRMIKHNKENQVIALVYPKTGHFVDPPHMPQTVFGLYFAQYDTIFRC GGTLQENNAACRHSWKAMLQFLNRNTGSSSKL Run BLAST on NCBI transcript from alignment at sc0000358:294168..296526+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020562 ID=TCONS_00020562|Name=TCONS_00020562|organism=Clytia hemisphaerica|type=transcript|length=2359bp|location=Sequence derived from alignment at sc0000358:294168..296526+ (Clytia hemisphaerica) CTTtatgtttttgtatttgatttagaaaaaaaagcaaaaattcaaaatga
gaaCCATTGAAATTACGCCAAATCCGTCAATGATGGATGAAGAAATTCAG
ATTGTGATAAAAAATCTATATTCTGGACAACACATTACAGTGTACAGTCA
AGTTCAAGAGAGGAAAACACTTTTTAGATCCCATGCTCATTTCATAGCAG
ACTTAAATGGGGTGGTTAATTTAGCTTCAGATAATTCTTTTGGTGGATGC
TACACTGGCGTTTCACCAATGGGAATATTATGGAGCTTACAACCTGTAAA
TGAAAAAGGGGGATTTAAACCAGCCAGATATTTGCCAAGGAAAGTGATGG
ATCCACAAGAATTTGTTTTGAGAGTAAGAATGTTCATTTTGTAACTTTAT
AAGAGAACCGATTTTTGCAGTCTANGAGTAAGAATGTTTATTTTGTAACT
TTATAAGAGAACCAATTTTTGCAGTGTGAGAAAATCCTTTTCTTATAAAT
TTTATTAGccattgtgatattttttgtaGTAGACACCTGAAAAACAAATA
TCATATTATGATAATTTTTAGAAACTCTTCATAATTAACTTTTTAAAAGG
TTTATGATGGGCATCTCAATATGAAAGAGATTGATCGATATCACAAGGAA
GGGAAATTACTAGCAGAAGACACAGTTTTACGTAAATTTTGCTCCGATGG
TATAATGCGTCACGAGGTCAACCATGGAAGATTGAGAGGTGTCATATTTA
AACCAAAAGGACCAGGCCCTTTTAAAGGTAATTTTCATAAACTGAAAACT
CATTTTGGTAGAATAATTACCAAATAGTTTCTGTAATGTTTGATTTTGGG
TTCTCAATTCAACAACGGTGATGCTTTtagctacacgctttttcttataa
gcatgttcatgatgaaaatggccaaaaaatgaagaatatggtaagaatat
caccatcatggtgGCATTTAATGAacaattttttactttaaattacCAAT
TATCCCAAAGTAAGGTTAATaccttcacaaaaatgccattttatgcttca
gATATGTATTTCTTGTTAAATTTAGTTTGAATTtcgatcctaacctaaga
atatcgtaagaatgttttaggatgatttttcccaaaaagttaagaatatc
gaTGATGagatgaaaaaacaccattcttataaaagcgTGTATATCAGAAA
CNaagaatatccatgatgaaatgaaaaaacaccattcttataaaaagcgt
taTAAAAATAACCTTATGATTgagaaggaagaaattttagcaagAAGTTT
GTACAGGACTCTTTTACTAAAAATTACTtgtcctttttcttttctttagg
gGTGATTGATATGTACGGTGGAAATGGTGGTATAGTTGAATTTCGTGCTG
CATTGCTAGCATCACATGGTTTTGTTGCTTACACTCTTCCCTACTTCAAA
TATAAAGATCTTCCAGAAGATATTCCTGACGTTGAAATTGAATACTTCAT
TGAAGCTATCCAATATTTTCAAACACTTGATTATGTACATCCAGGGATTT
CGTTGATAGGGCTTTCCTTTGGTGGTGGGCTTATTGTGTTCCTGTCAACT
ATGGCGAACCTTGGAATCACTGGTGTGGTTCCTATTGGTGCACCACATTA
TATTCAATTCCCCATGAAATGGAAGGGGGGATTCTACCCTGACCCACAaa
aatgtgatttgactgattTTGATGGCTGTGATTTTGAACCAGATGAATAT
GGTGGTATTTATGGTGCATCTTTAATCTACGGCGAGTCTTGTGACCATTA
CACGACTCCAATAGAGAAATGTTCGAAAAGCACGAAATATCTTTTCATAG
TTGGATTACAAGATGGTAATATAGATGCTAAGAGatcttttgaagttttg
aaTCAACGAATGATAAAACATAATAAGGAAAATCAAGTGATAGCTCTTGT
TTATCCAAAAACGGGACATTTTGTTGACCCACCCCATATGCCACAGACTG
TGTTTGGACTTTACTTTGCCCAATACGATACAATATTTCGTTGTGGAGGT
ACTCTACAAGAGAATAATGCAGCCTGTAGACATTCATGGAAAGCTATGCT
TCAATTTTTGAACAGAAATACTGGTTCCTCTAGTAAgttgtaatacactt
ttttaaaagaacatccaaactttttgaagcctttggatgttcttaacttt
ttgagttttaagcctataaATTTTCgacgtgttcttatttttgccttttt
ttcgagtatttttgtccattttcctacgaaattcggtgttctagagtctg
taaagccttaaaatgttcttaacttgtttttaacattttggctatcaaag
ccttatgtt Coding sequence (CDS) from alignment at sc0000358:294168..296526+ >TCONS_00020562 ID=TCONS_00020562|Name=TCONS_00020562|organism=Clytia hemisphaerica|type=CDS|length=3897bp|location=Sequence derived from alignment at sc0000358:294168..296526+ (Clytia hemisphaerica) atgagaaCCATTGAAATTACGCCAAATCCGTCAATGATGGATGAAGAAAT TCAGATTGTGATAAAAAATCTATATTCTGGACAACACATTACAGTGTACA GTCAAGTTCAAGAGAGGAAAACACTTTTTAGATCCCATGCTCATTTCATA GCAGACTTAAATGGGGTGGTTAATTTAGCTTCAGATAATTCTTTTGGTGG ATGCTACACTGGCGTTTCACCAATGGGAATATTATGGAGCTTACAACCTG TAAATGAAAAAGGGGGATTTAAACCAGCCAGATATTTGCCAAGGAAAGTG ATGGATCCACAAGAATTTGTTTTGAGAGTTTATGATGGGCATCTCAATAT GAAAGAGATTGATCGATATCACAAGGAAGGGAAATTACTAGCAGAAGACA CAGTTTTACGTAAATTTTGCTCCGATGGTATAATGCGTCACGAGGTCAAC CATGGAAGATTGAGAGGTGTCATATTTAAACCAAAAGGACCAGGCCCTTT TAAAGggGTGATTGATATGTACGGTGGAAATGGTGGTATAGTTGAATTTC GTGCTGCATTGCTAGCATCACATGGTTTTGTTGCTTACACTCTTCCCTAC TTCAAATATAAAGATCTTCCAGAAGATATTCCTGACGTTGAAATTGAATA CTTCATTGAAGCTATCCAATATTTTCAAACACTTGATTATGTACATCCAG GGATTTCGTTGATAGGGCTTTCCTTTGGTGGTGGGCTTATTGTGTTCCTG TCAACTATGGCGAACCTTGGAATCACTGGTGTGGTTCCTATTGGTGCACC ACATTATATTCAATTCCCCATGAAATGGAAGGGGGGATTCTACCCTGACC CACAaaaatgtgatttgactgattTTGATGGCTGTGATTTTGAACCAGAT GAATATGGTGGTATTTATGGTGCATCTTTAATCTACGGCGAGTCTTGTGA CCATTACACGACTCCAATAGAGAAATGTTCGAAAAGCACGAAATATCTTT TCATAGTTGGATTACAAGATGGTAATATAGATGCTAAGAGatcttttgaa gttttgaaTCAACGAATGATAAAACATAATAAGGAAAATCAAGTGATAGC TCTTGTTTATCCAAAAACGGGACATTTTGTTGACCCACCCCATATGCCAC AGACTGTGTTTGGACTTTACTTTGCCCAATACGATACAATATTTCGTTGT GGAGGTACTCTACAAGAGAATAATGCAGCCTGTAGACATTCATGGAAAGC TATGCTTCAATTTTTGAACAGAAATACTGGTTCCTCTAGTAAgttgtaaa tgagaaCCATTGAAATTACGCCAAATCCGTCAATGATGGATGAAGAAATT CAGATTGTGATAAAAAATCTATATTCTGGACAACACATTACAGTGTACAG TCAAGTTCAAGAGAGGAAAACACTTTTTAGATCCCATGCTCATTTCATAG CAGACTTAAATGGGGTGGTTAATTTAGCTTCAGATAATTCTTTTGGTGGA TGCTACACTGGCGTTTCACCAATGGGAATATTATGGAGCTTACAACCTGT AAATGAAAAAGGGGGATTTAAACCAGCCAGATATTTGCCAAGGAAAGTGA TGGATCCACAAGAATTTGTTTTGAGAGTTTATGATGGGCATCTCAATATG AAAGAGATTGATCGATATCACAAGGAAGGGAAATTACTAGCAGAAGACAC AGTTTTACGTAAATTTTGCTCCGATGGTATAATGCGTCACGAGGTCAACC ATGGAAGATTGAGAGGTGTCATATTTAAACCAAAAGGACCAGGCCCTTTT AAAGggGTGATTGATATGTACGGTGGAAATGGTGGTATAGTTGAATTTCG TGCTGCATTGCTAGCATCACATGGTTTTGTTGCTTACACTCTTCCCTACT TCAAATATAAAGATCTTCCAGAAGATATTCCTGACGTTGAAATTGAATAC TTCATTGAAGCTATCCAATATTTTCAAACACTTGATTATGTACATCCAGG GATTTCGTTGATAGGGCTTTCCTTTGGTGGTGGGCTTATTGTGTTCCTGT CAACTATGGCGAACCTTGGAATCACTGGTGTGGTTCCTATTGGTGCACCA CATTATATTCAATTCCCCATGAAATGGAAGGGGGGATTCTACCCTGACCC ACAaaaatgtgatttgactgattTTGATGGCTGTGATTTTGAACCAGATG AATATGGTGGTATTTATGGTGCATCTTTAATCTACGGCGAGTCTTGTGAC CATTACACGACTCCAATAGAGAAATGTTCGAAAAGCACGAAATATCTTTT CATAGTTGGATTACAAGATGGTAATATAGATGCTAAGAGatcttttgaag ttttgaaTCAACGAATGATAAAACATAATAAGGAAAATCAAGTGATAGCT CTTGTTTATCCAAAAACGGGACATTTTGTTGACCCACCCCATATGCCACA GACTGTGTTTGGACTTTACTTTGCCCAATACGATACAATATTTCGTTGTG GAGGTACTCTACAAGAGAATAATGCAGCCTGTAGACATTCATGGAAAGCT ATGCTTCAATTTTTGAACAGAAATACTGGTTCCTCTAGTAAgttgtaaat gagaaCCATTGAAATTACGCCAAATCCGTCAATGATGGATGAAGAAATTC AGATTGTGATAAAAAATCTATATTCTGGACAACACATTACAGTGTACAGT CAAGTTCAAGAGAGGAAAACACTTTTTAGATCCCATGCTCATTTCATAGC AGACTTAAATGGGGTGGTTAATTTAGCTTCAGATAATTCTTTTGGTGGAT GCTACACTGGCGTTTCACCAATGGGAATATTATGGAGCTTACAACCTGTA AATGAAAAAGGGGGATTTAAACCAGCCAGATATTTGCCAAGGAAAGTGAT GGATCCACAAGAATTTGTTTTGAGAGTTTATGATGGGCATCTCAATATGA AAGAGATTGATCGATATCACAAGGAAGGGAAATTACTAGCAGAAGACACA GTTTTACGTAAATTTTGCTCCGATGGTATAATGCGTCACGAGGTCAACCA TGGAAGATTGAGAGGTGTCATATTTAAACCAAAAGGACCAGGCCCTTTTA AAGggGTGATTGATATGTACGGTGGAAATGGTGGTATAGTTGAATTTCGT GCTGCATTGCTAGCATCACATGGTTTTGTTGCTTACACTCTTCCCTACTT CAAATATAAAGATCTTCCAGAAGATATTCCTGACGTTGAAATTGAATACT TCATTGAAGCTATCCAATATTTTCAAACACTTGATTATGTACATCCAGGG ATTTCGTTGATAGGGCTTTCCTTTGGTGGTGGGCTTATTGTGTTCCTGTC AACTATGGCGAACCTTGGAATCACTGGTGTGGTTCCTATTGGTGCACCAC ATTATATTCAATTCCCCATGAAATGGAAGGGGGGATTCTACCCTGACCCA CAaaaatgtgatttgactgattTTGATGGCTGTGATTTTGAACCAGATGA ATATGGTGGTATTTATGGTGCATCTTTAATCTACGGCGAGTCTTGTGACC ATTACACGACTCCAATAGAGAAATGTTCGAAAAGCACGAAATATCTTTTC ATAGTTGGATTACAAGATGGTAATATAGATGCTAAGAGatcttttgaagt tttgaaTCAACGAATGATAAAACATAATAAGGAAAATCAAGTGATAGCTC TTGTTTATCCAAAAACGGGACATTTTGTTGACCCACCCCATATGCCACAG ACTGTGTTTGGACTTTACTTTGCCCAATACGATACAATATTTCGTTGTGG AGGTACTCTACAAGAGAATAATGCAGCCTGTAGACATTCATGGAAAGCTA TGCTTCAATTTTTGAACAGAAATACTGGTTCCTCTAGTAAgttgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00020562-exon-sc0000358-1491911889:294168..294540 | TCONS_00020562-exon-sc0000358-1491911889:294168..294540 | Clytia hemisphaerica | exon |
| TCONS_00020562-exon-sc0000358-1510915933:294168..294540 | TCONS_00020562-exon-sc0000358-1510915933:294168..294540 | Clytia hemisphaerica | exon |
| TCONS_00020562-exon-sc0000358-1575043694:294168..294540 | TCONS_00020562-exon-sc0000358-1575043694:294168..294540 | Clytia hemisphaerica | exon |
| TCONS_00020562-exon-sc0000358-1491911889:294767..294944 | TCONS_00020562-exon-sc0000358-1491911889:294767..294944 | Clytia hemisphaerica | exon |
| TCONS_00020562-exon-sc0000358-1510915933:294767..294944 | TCONS_00020562-exon-sc0000358-1510915933:294767..294944 | Clytia hemisphaerica | exon |
| TCONS_00020562-exon-sc0000358-1575043694:294767..294944 | TCONS_00020562-exon-sc0000358-1575043694:294767..294944 | Clytia hemisphaerica | exon |
| TCONS_00020562-exon-sc0000358-1491911889:295517..296526 | TCONS_00020562-exon-sc0000358-1491911889:295517..296526 | Clytia hemisphaerica | exon |
| TCONS_00020562-exon-sc0000358-1510915933:295517..296526 | TCONS_00020562-exon-sc0000358-1510915933:295517..296526 | Clytia hemisphaerica | exon |
| TCONS_00020562-exon-sc0000358-1575043694:295517..296526 | TCONS_00020562-exon-sc0000358-1575043694:295517..296526 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000358 | supercontig | sc0000358:294168..296526 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
| GO:0006637 | acyl-CoA metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
| GO:0016790 | thiolester hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006637 |
acyl-CoA metabolic process |
| molecular_function |
GO:0016790 |
thiolester hydrolase activity |
Blast
BLAST of TCONS_00020562 vs. Swiss-Prot (Human)
Match: ACOT1 (Acyl-coenzyme A thioesterase 1 OS=Homo sapiens GN=ACOT1 PE=1 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 8.307e-48 Identity = 126/417 (30.22%), Postives = 202/417 (48.44%), Query Frame = 2
Query: 86 DEEIQIVIKNLYSGQHITVYSQVQERK-TLFRSHAHFIADLNGVVNLASDNSFGGCYTGVSPMGILWSLQPVNEKGGFKP-ARYLPRKVMDPQEFVLRVYDGHLNMKEIDRYHKEGKLLAEDTVLRKFCSDGIMRHEVNHGRLRGVIFKPKGPGPFKGVIDMYGGNGGIVEFRAALLASHGFVAYTLPYFKYKDLPEDIPDVEIEYFIEAIQYFQTLDYVHPXXXXXXXXXXXXXXXXXXTMANL--GITGVVPI-GAPHYIQFPMKWKGGFYPDPQKCDLTDFDGCDFEPDEYGGIYGASLIYGESCDHYT-TPIEKCSKSTKYLFIVGLQDGNIDAKRSFEVLNQRMIKHNKENQVIALVYPKTGHFVDPPHMPQTVFGLYFAQYDTIFRCGGTLQENNAACRHSWKAMLQFLNR 1318
DE ++I ++ L Q +T+ + +++ K LF++HA + AD G ++L + GG + G+ PMG+LW+L+P KP R + R V P L V DGH G+LL R F G+ R V GR+RG +F P PGPF G++DM+G GG++E+RA+LLA GF L Y+ Y+DLP+ + + +EYF EA+ Y L + +GL +MA+ GIT V I G+ + +++KG P + + D Y I E D + P+E+ + +LF+VG D N ++ +R+ H + I + YP+TGH+++PP+ P L+ A + GG + + A +WK + F ++
Sbjct: 16 DEPVRIAVRGLAPEQPVTLRASLRDEKGALFQAHARYRADTLGELDLERAPALGGSFAGLEPMGLLWALEPE------KPLVRLVKRDVRTPLAVELEVLDGH--------DPDPGRLLCRVRHERYFLPPGVRREPVRAGRVRGTLFLPPEPGPFPGIVDMFGTGGGLLEYRASLLAGKGFAVMALAYYNYEDLPKTMETLHLEYFEEAVNYL--LSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVG----VNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAEST--FLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQI-ICYPETGHYIEPPYFPLCRASLH-ALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHK 408
The following BLAST results are available for this feature:
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