TCONS_00020446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020446
Unique NameTCONS_00020446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020446 ID=TCONS_00020446|Name=TCONS_00020446|organism=Clytia hemisphaerica|type=transcript|length=794bp
ctaattctaaaattttagttCCTTAAATGTTGCAATCATATAAAATTCAA
ACTAATacacccttttttataagaatatacttaataagaatattcatgat
aaaatttaccaaaaaattggaatttggcaacagaacctaagaatgctatt
tttagagcatttttgactgtaaattgtcaattatccccaagtaaggctca
atGCTTTCATAAAAAAGCCATTTTATAATTCAGGTATGTATCAATGTTAC
ATTTAGGTTCAATGTCGACCATAATCTAACAAGAATACCAATTTTGAATG
ACAATTTTCCCCCAAAAGATAAGAATATGCACGATGAAATGAAAtatacc
attcttataaaaaaaaaagcatgACCTCTACTAAGTCGTCTAAGACAGTG
AAAATCAGGTTAACGTTTATCTGGCACTCAGGTGCAGAAATTTTCTTGCA
ACACGCTAAAGCTATGAAggtcgtaaaaattttcagCATCTTAAAGGTTT
AGATTGCGGAATTATGTAAGACcacgtcaaggattttgcagcgggaggtc
tggtaaacTAGCTCTCGTTTTCGCAGAtgggcgggtccaaccgaaatatt
atTAGCCTTACGCTAAATGGTAGCTGAACCCGACTGGGATGCGGCACACC
AAAGgtcgactatcattcctctccgatgggaaattggcccgttccttcag
agctttagcgtaggCGGCtgcgccaatccgccatcggaatatcagataag
gttAACGTTTTCAATCTCATCTTGGTAATTACACTTAGAGTAAN
Run BLAST on NCBI

transcript from alignment at sc0000356:208143..208936

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020446 ID=TCONS_00020446|Name=TCONS_00020446|organism=Clytia hemisphaerica|type=transcript|length=794bp|location=Sequence derived from alignment at sc0000356:208143..208936 (Clytia hemisphaerica)
NTTACTCTAAGTGTAATTACCAAGATGAGATTGAAAACGTTaaccttatc
tgatattccgatggcggattggcgcaGCCGcctacgctaaagctctgaag
gaacgggccaatttcccatcggagaggaatgatagtcgacCTTTGGTGTG
CCGCATCCCAGTCGGGTTCAGCTACCATTTAGCGTAAGGCTAataatatt
tcggttggacccgcccaTCTGCGAAAACGAGAGCTAgtttaccagacctc
ccgctgcaaaatccttgacgtgGTCTTACATAATTCCGCAATCTAAACCT
TTAAGATGctgaaaatttttacgaccTTCATAGCTTTAGCGTGTTGCAAG
AAAATTTCTGCACCTGAGTGCCAGATAAACGTTAACCTGATTTTCACTGT
CTTAGACGACTTAGTAGAGGTcatgcttttttttttataagaatggtata
TTTCATTTCATCGTGCATATTCTTATCTTTTGGGGGAAAATTGTCATTCA
AAATTGGTATTCTTGTTAGATTATGGTCGACATTGAACCTAAATGTAACA
TTGATACATACCTGAATTATAAAATGGCTTTTTTATGAAAGCattgagcc
ttacttggggataattgacaatttacagtcaaaaatgctctaaaaatagc
attcttaggttctgttgccaaattccaattttttggtaaattttatcatg
aatattcttattaagtatattcttataaaaaagggtgtATTAGTTTGAAT
TTTATATGATTGCAACATTTAAGGaactaaaattttagaattag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011489XLOC_011489Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020446-exon-sc0000356-1491911889:208143..208936TCONS_00020446-exon-sc0000356-1491911889:208143..208936Clytia hemisphaericaexon
TCONS_00020446-exon-sc0000356-1510915933:208143..208936TCONS_00020446-exon-sc0000356-1510915933:208143..208936Clytia hemisphaericaexon
TCONS_00020446-exon-sc0000356-1575043694:208143..208936TCONS_00020446-exon-sc0000356-1575043694:208143..208936Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:208143..208936 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0606457	0.118278	0.142517	0	0	0.0646269	0	0.364971	0.71547	0.443112	0.184327	1.49442	0.282335	0.209434	0.20662	0.147823	0.273159	0.186653	0.128935	0.607148	0.41045	0.429007	0.0695352	0.126435	0.716239	0.348669	0.499788	0.354991	0	0.14124
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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