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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020424 ID=TCONS_00020424|Name=TCONS_00020424|organism=Clytia hemisphaerica|type=transcript|length=3639bpRun BLAST on NCBI protein sequence of TCONS_00020424-protein >TCONS_00020424-protein ID=TCONS_00020424-protein|Name=TCONS_00020424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1164bp LSAFQAFVVKNNAFRVKLKSFMLSKFMFWFIVSAVFLNSLFGAIQHYRQPRun BLAST on NCBI transcript from alignment at sc0000356:87812..112627- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020424 ID=TCONS_00020424|Name=TCONS_00020424|organism=Clytia hemisphaerica|type=transcript|length=24816bp|location=Sequence derived from alignment at sc0000356:87812..112627- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000356:87812..112627- >TCONS_00020424 ID=TCONS_00020424|Name=TCONS_00020424|organism=Clytia hemisphaerica|type=CDS|length=104850bp|location=Sequence derived from alignment at sc0000356:87812..112627- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020424 vs. Swiss-Prot (Human)
Match: CAC1S (Voltage-dependent L-type calcium channel subunit alpha-1S OS=Homo sapiens GN=CACNA1S PE=1 SV=4) HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0 Identity = 460/1147 (40.10%), Postives = 696/1147 (60.68%), Query Frame = 2
Query: 32 NNAFRVKLKSFMLSKFMFWFIVSAVFLNSLFGAIQHYRQPQWITDVTSITDNLFLGIFVSEMCLKLYAVGPNAYFQSKFNKFDFSVVVMGLINLFLSKMFNIN-LGIPVLRQLRLMRLFKFTKYYKKMKNLVQSIINSMAAIVSXXXXXXXXXXXXXXXGMNIFGGQFYAREHIGKPFSRTNFDDFFNAMLAVFQIITGEDWNFVMYEGIVAYGGPRSPVGLAVSLYFVGVTVLGNYVLLNVFLAIAVDNISLXXXXXXXXXXXXXXXXXXQ--QAVKDKYAPPSARSNGEIETASQ-DRFAEADRQVIGEYGSTAP------PGHHAPGDNFLENLKDPSRMTGNIPTFVNAEEQTV-----NTLFIFPPDGIVRRIIHPIVTSPHFDNFXXXXXXXXXXXXXXENPTNPDADINKILNLTDYFFTTVFALEVLLKVVNFGFALHPNSYCRDTWNCADMFVVSCAITSLVLSQDKNASTTVKSIVKILRILRVLRPLKSINKLQELKAVFQCMVFSLQNVVNVLIITVQFLLIFSMMGVQLFNGKLFQCNDPSKEFEDECQGYYITFDKENYNRPIQVK---REWSLIDWNFNHLGIALTTLFSSATGEGWPAVMQTGIDSQLENQGPLLNNKIWXXXXXXXXXXXXXXXXXXXXXGLIILTFQNLQIDP--NAALDRNTKNSFDFVMRSKPMERFMPEDVKSWQYKAWALVESSQWEILISVLIALNTVVLMMEFADQPDWYSNILGMIGDVFTFVFTFEFALKMFALGC-NYFKDFWNNFDMFIVLGSILDFMIKKI--------------------LPPGTVPFDTSSXXXXXXXXXXXXXXXXXXXXXXXWTFLQSFKALPYVCMLIFLLFFVYGIIGMQIFSSIDKDSEDDPWNQINRNNHFSTYFSSTQVLFRVATGENWPNIMLACTSGAKCDQKLRSVQIDNMQDCGSPIAYVYFISFVFFCSFLMLNLFIAVIMDNFAFLTEDSSILGPHHLDEFVTVWSDFDPRASGRIQHTEVCELLRQMLPPVGLGLKCPKTVAYKRLVQMNMRYYRDGTVDYTGTFFALVRTGLKVATQDANLKKTDQEFKNMLKKQIK-VPKRTLDMIIPRVPRNAKHMTIAKIYTAKLIWENYKNMKKAQQ 3346
N FR K + SK +W ++ V LN+L A +H+ QP W+T + I + + L +F +EM +K+Y +G YF S FN+FD VV G++ + L + + LGI VLR +RL+R+FK TKY+ + NLV S++NS+ +I SLL+LLFLF++IFALLGM +FGG++ + R+NFD+F A+++VFQ++TGEDW +MY GI+AYGGP P G+ V +YF+ + V GNY+LLNVFLAIAVDN++ + A++ EE+ + + + DK + ++E + + + I E+ S P PGD+ + + P + +E+ V ++ FIF P +R + H IV + F NFIL IL+SSA LA E+P D+ N+IL D FT+VF +E++LK+ +G LH S+CR+ +N D+ VV+ ++ S+ L ++ S+VKILR+LRVLRPL++IN+ + LK V QCM ++ + N++++T +F+ +GVQLF GK F+C D SK E+EC+GYY + + P+Q++ REW D++F+++ A+ +LF+ +T EGWP ++ IDS E+ GP+ NN++ +AI+FI+++++ +FF +N+FVG +I+TFQ N LD+N + + ++++P+ ++P++ +QY+ W +V SS +E L+ LI LNT+ L M+ +Q + ++I ++ FT +FT E LK+ A YF D WN FD IV+GSI+D ++ +I P + ++ RLFR +RLIKLL R +R LLWTF++SF+ALPYV +LI +LFF+Y +IGMQ+F I QINRNN+F T+ + +LFR ATGE W I+LAC+ G CD + + CG+ AY YFISF C+FL++NLF+AVIMDNF +LT D SILGPHHLDEF +W+++DP A GRI+H +V LLR++ PP+G G CP VA KRLV MNM DGTV + T FALVRT LK+ T + N ++ ++E + ++KK K + LD +IP P +T+ K Y LI E+++ K Q+
Sbjct: 418 NRIFRWKCHDIVKSKVFYWLVILIVALNTLSIASEHHNQPLWLTRLQDIANRVLLSLFTTEMLMKMYGLGLRQYFMSIFNRFDCFVVCSGILEILLVESGAMTPLGISVLRCIRLLRIFKITKYWTSLSNLVASLLNSIRSIASLLLLLFLFIVIFALLGMQLFGGRY---DFEDTEVRRSNFDNFPQALISVFQVLTGEDWTSMMYNGIMAYGGPSYP-GMLVCIYFIILFVCGNYILLNVFLAIAVDNLAEAESLTSAQKAKAEEKKRRKMSKGLPDKSEEEKSTMAKKLEQKPKGEGIPTTAKLKIDEFESNVNEVKDPYPSADFPGDDEEDEPEIPLSPRPRPLAELQLKEKAVPIPEASSFFIFSPTNKIRVLCHRIVNATWFTNFILLFILLSSAALAAEDPIRADSMRNQILKHFDIGFTSVFTVEIVLKMTTYGAFLHKGSFCRNYFNMLDLLVVAVSLISMGLE------SSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCMFVAISTIGNIVLVTTLLQFMFACIGVQLFKGKFFRCTDLSKMTEEECRGYYYVYKDGD---PMQIELRHREWVHSDFHFDNVLSAMMSLFTVSTFEGWPQLLYKAIDSNAEDVGPIYNNRVEMAIFFIIYIILIAFFMMNIFVGFVIVTFQEQGETEYKNCELDKNQRQCVQYALKARPLRCYIPKN--PYQYQVWYIVTSSYFEYLMFALIMLNTICLGMQHYNQSEQMNHISDILNVAFTIIFTLEMILKLMAFKARGYFGDPWNVFDFLIVIGSIIDVILSEIDTFLASSGGLYCLGGGCGNVDPDESARISSAFFRLFRVMRLIKLLSRAEGVRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGKIALVD----GTQINRNNNFQTFPQAVLLLFRCATGEAWQEILLACSYGKLCDPESDYAPGEEYT-CGTNFAYYYFISFYMLCAFLVINLFVAVIMDNFDYLTRDWSILGPHHLDEFKAIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKFCPHRVACKRLVGMNMPLNSDGTVTFNATLFALVRTALKIKT-EGNFEQANEELRAIIKKIWKRTSMKLLDQVIP--PIGDDEVTVGKFYATFLIQEHFRKFMKRQE 1541 The following BLAST results are available for this feature:
BLAST of TCONS_00020424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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