TCONS_00020424-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020424-protein
Unique NameTCONS_00020424-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1164

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020424-protein ID=TCONS_00020424-protein|Name=TCONS_00020424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1164bp
LSAFQAFVVKNNAFRVKLKSFMLSKFMFWFIVSAVFLNSLFGAIQHYRQP
QWITDVTSITDNLFLGIFVSEMCLKLYAVGPNAYFQSKFNKFDFSVVVMG
LINLFLSKMFNINLGIPVLRQLRLMRLFKFTKYYKKMKNLVQSIINSMAA
IVSLLVLLFLFLMIFALLGMNIFGGQFYAREHIGKPFSRTNFDDFFNAML
AVFQIITGEDWNFVMYEGIVAYGGPRSPVGLAVSLYFVGVTVLGNYVLLN
VFLAIAVDNISLDDDEEKAEEEAEEERADAQQAVKDKYAPPSARSNGEIE
TASQDRFAEADRQVIGEYGSTAPPGHHAPGDNFLENLKDPSRMTGNIPTF
VNAEEQTVNTLFIFPPDGIVRRIIHPIVTSPHFDNFILALILISSALLAL
ENPTNPDADINKILNLTDYFFTTVFALEVLLKVVNFGFALHPNSYCRDTW
NCADMFVVSCAITSLVLSQDKNASTTVKSIVKILRILRVLRPLKSINKLQ
ELKAVFQCMVFSLQNVVNVLIITVQFLLIFSMMGVQLFNGKLFQCNDPSK
EFEDECQGYYITFDKENYNRPIQVKREWSLIDWNFNHLGIALTTLFSSAT
GEGWPAVMQTGIDSQLENQGPLLNNKIWIAIYFIVFVVIFSFFFINVFVG
LIILTFQNLQIDPNAALDRNTKNSFDFVMRSKPMERFMPEDVKSWQYKAW
ALVESSQWEILISVLIALNTVVLMMEFADQPDWYSNILGMIGDVFTFVFT
FEFALKMFALGCNYFKDFWNNFDMFIVLGSILDFMIKKILPPGTVPFDTS
SLRLFRALRLIKLLRRFRDLRILLWTFLQSFKALPYVCMLIFLLFFVYGI
IGMQIFSSIDKDSEDDPWNQINRNNHFSTYFSSTQVLFRVATGENWPNIM
LACTSGAKCDQKLRSVQIDNMQDCGSPIAYVYFISFVFFCSFLMLNLFIA
VIMDNFAFLTEDSSILGPHHLDEFVTVWSDFDPRASGRIQHTEVCELLRQ
MLPPVGLGLKCPKTVAYKRLVQMNMRYYRDGTVDYTGTFFALVRTGLKVA
TQDANLKKTDQEFKNMLKKQIKVPKRTLDMIIPRVPRNAKHMTIAKIYTA
KLIWENYKNMKKAQQPERRKSIFVPSAEPPKPVANGKAPVRNGHANGSVP
NGGVTLKQADEEWC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011473XLOC_011473Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020424TCONS_00020424Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005821Ion_trans_dom
IPR031649GPHH_dom
IPR014873VDCC_a1su_IQ
IPR002048EF_hand_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005216 ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 259..286
NoneNo IPR availableGENE3D1.10.238.10coord: 968..1071
e-value: 4.2E-9
score: 35.8
NoneNo IPR availableGENE3D1.10.287.70coord: 379..661
e-value: 1.6E-47
score: 161.3
coord: 704..960
e-value: 2.7E-56
score: 190.0
coord: 23..262
e-value: 8.8E-46
score: 155.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..303
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1124..1164
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 24..261
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 706..956
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 380..541
coord: 584..658
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 25..261
e-value: 9.4E-51
score: 172.3
coord: 706..963
e-value: 1.8E-61
score: 207.4
coord: 381..660
e-value: 1.2E-51
score: 175.2
IPR031649Voltage-dependent L-type calcium channel, IQ-associated domainPFAMPF16905GPHHcoord: 965..1034
e-value: 3.2E-29
score: 100.4
IPR014873Voltage-dependent calcium channel, alpha-1 subunit, IQ domainPFAMPF08763Ca_chan_IQcoord: 1037..1112
e-value: 2.2E-14
score: 53.3
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 969..1004
score: 8.488

Blast
BLAST of TCONS_00020424-protein vs. Swiss-Prot (Human)
Match: CAC1S (Voltage-dependent L-type calcium channel subunit alpha-1S OS=Homo sapiens GN=CACNA1S PE=1 SV=4)

HSP 1 Score: 808.135 bits (2086), Expect = 0.000e+0
Identity = 465/1152 (40.36%), Postives = 697/1152 (60.50%), Query Frame = 0
Query:   11 NNAFRVKLKSFMLSKFMFWFIVSAVFLNSLFGAIQHYRQPQWITDVTSITDNLFLGIFVSEMCLKLYAVGPNAYFQSKFNKFDFSVVVMGLINLFLSKMFNIN-LGIPVLRQLRLMRLFKFTKYYKKMKNLVQSIINSMAAIVSLLVLLFLFLMIFALLGMNIFGGQFYAREHIGKPFSRTNFDDFFNAMLAVFQIITGEDWNFVMYEGIVAYGGPRSPVGLAVSLYFVGVTVLGNYVLLNVFLAIAVDNISLDDDEEKAEEEAEEE--RADAQQAVKDKYAPPSA--------RSNGE-IETASQ---DRFAEADRQVIGEYGSTAPPGHHAPGDNFLENLKDPSRMTGNIPTFVNAEEQTV-----NTLFIFPPDGIVRRIIHPIVTSPHFDNFILALILISSALLALENPTNPDADINKILNLTDYFFTTVFALEVLLKVVNFGFALHPNSYCRDTWNCADMFVVSCAITSLVLSQDKNASTTVKSIVKILRILRVLRPLKSINKLQELKAVFQCMVFSLQNVVNVLIITVQFLLIFSMMGVQLFNGKLFQCNDPSKEFEDECQGYYITFDKENYNRPIQVK---REWSLIDWNFNHLGIALTTLFSSATGEGWPAVMQTGIDSQLENQGPLLNNKIWIAIYFIVFVVIFSFFFINVFVGLIILTFQNLQIDP--NAALDRNTKNSFDFVMRSKPMERFMPEDVKSWQYKAWALVESSQWEILISVLIALNTVVLMMEFADQPDWYSNILGMIGDVFTFVFTFEFALKMFALGC-NYFKDFWNNFDMFIVLGSILDFMIKKIL--------------------PPGTVPFDTSSLRLFRALRLIKLLRRFRDLRILLWTFLQSFKALPYVCMLIFLLFFVYGIIGMQIFSSIDKDSEDDPWNQINRNNHFSTYFSSTQVLFRVATGENWPNIMLACTSGAKCDQKLRSVQIDNMQDCGSPIAYVYFISFVFFCSFLMLNLFIAVIMDNFAFLTEDSSILGPHHLDEFVTVWSDFDPRASGRIQHTEVCELLRQMLPPVGLGLKCPKTVAYKRLVQMNMRYYRDGTVDYTGTFFALVRTGLKVATQDANLKKTDQEFKNMLKKQIK-VPKRTLDMIIPRVPRNAKHMTIAKIYTAKLIWENYKNMKKAQQ 1115
            N  FR K    + SK  +W ++  V LN+L  A +H+ QP W+T +  I + + L +F +EM +K+Y +G   YF S FN+FD  VV  G++ + L +   +  LGI VLR +RL+R+FK TKY+  + NLV S++NS+ +I SLL+LLFLF++IFALLGM +FGG++   +       R+NFD+F  A+++VFQ++TGEDW  +MY GI+AYGGP  P G+ V +YF+ + V GNY+LLNVFLAIAVDN++  +    A++   EE  R    + + DK     +        +  GE I T ++   D F     +V   Y     P    PGD+  +  + P          +  +E+ V     ++ FIF P   +R + H IV +  F NFIL  IL+SSA LA E+P   D+  N+IL   D  FT+VF +E++LK+  +G  LH  S+CR+ +N  D+ VV+ ++ S+ L       ++  S+VKILR+LRVLRPL++IN+ + LK V QCM  ++  + N++++T     +F+ +GVQLF GK F+C D SK  E+EC+GYY  +   +   P+Q++   REW   D++F+++  A+ +LF+ +T EGWP ++   IDS  E+ GP+ NN++ +AI+FI+++++ +FF +N+FVG +I+TFQ        N  LD+N +    + ++++P+  ++P++   +QY+ W +V SS +E L+  LI LNT+ L M+  +Q +  ++I  ++   FT +FT E  LK+ A     YF D WN FD  IV+GSI+D ++ +I                     P  +    ++  RLFR +RLIKLL R   +R LLWTF++SF+ALPYV +LI +LFF+Y +IGMQ+F  I          QINRNN+F T+  +  +LFR ATGE W  I+LAC+ G  CD +      +    CG+  AY YFISF   C+FL++NLF+AVIMDNF +LT D SILGPHHLDEF  +W+++DP A GRI+H +V  LLR++ PP+G G  CP  VA KRLV MNM    DGTV +  T FALVRT LK+ T+  N ++ ++E + ++KK  K    + LD +IP  P     +T+ K Y   LI E+++   K Q+
Sbjct:  418 NRIFRWKCHDIVKSKVFYWLVILIVALNTLSIASEHHNQPLWLTRLQDIANRVLLSLFTTEMLMKMYGLGLRQYFMSIFNRFDCFVVCSGILEILLVESGAMTPLGISVLRCIRLLRIFKITKYWTSLSNLVASLLNSIRSIASLLLLLFLFIVIFALLGMQLFGGRYDFED---TEVRRSNFDNFPQALISVFQVLTGEDWTSMMYNGIMAYGGPSYP-GMLVCIYFIILFVCGNYILLNVFLAIAVDNLAEAESLTSAQKAKAEEKKRRKMSKGLPDKSEEEKSTMAKKLEQKPKGEGIPTTAKLKIDEFESNVNEVKDPY-----PSADFPGDDEEDEPEIPLSPRPRPLAELQLKEKAVPIPEASSFFIFSPTNKIRVLCHRIVNATWFTNFILLFILLSSAALAAEDPIRADSMRNQILKHFDIGFTSVFTVEIVLKMTTYGAFLHKGSFCRNYFNMLDLLVVAVSLISMGLE------SSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCMFVAISTIGNIVLVTTLLQFMFACIGVQLFKGKFFRCTDLSKMTEEECRGYYYVYKDGD---PMQIELRHREWVHSDFHFDNVLSAMMSLFTVSTFEGWPQLLYKAIDSNAEDVGPIYNNRVEMAIFFIIYIILIAFFMMNIFVGFVIVTFQEQGETEYKNCELDKNQRQCVQYALKARPLRCYIPKN--PYQYQVWYIVTSSYFEYLMFALIMLNTICLGMQHYNQSEQMNHISDILNVAFTIIFTLEMILKLMAFKARGYFGDPWNVFDFLIVIGSIIDVILSEIDTFLASSGGLYCLGGGCGNVDPDESARISSAFFRLFRVMRLIKLLSRAEGVRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGKIALVD----GTQINRNNNFQTFPQAVLLLFRCATGEAWQEILLACSYGKLCDPESDYAPGEEYT-CGTNFAYYYFISFYMLCAFLVINLFVAVIMDNFDYLTRDWSILGPHHLDEFKAIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKFCPHRVACKRLVGMNMPLNSDGTVTFNATLFALVRTALKIKTE-GNFEQANEELRAIIKKIWKRTSMKLLDQVIP--PIGDDEVTVGKFYATFLIQEHFRKFMKRQE 1541          

HSP 2 Score: 177.563 bits (449), Expect = 8.970e-45
Identity = 160/675 (23.70%), Postives = 302/675 (44.74%), Query Frame = 0
Query:  359 NTLFIFPPDGIVRRIIHPIVTSPHFDNFILALILISSALLA--LENPTNPDADINKILNLTDYFFTTVFALEVLLKVVNFGFALHPNSYCRDTWNCADMFVVSCAITSLVLS-----QDKNASTTVKSI---VKILRILRVLRPLKSINKLQELKAVFQCMVFSLQNVVNVLIITVQFLLIFSMMGVQLFNGKL-----FQCNDPSKEFEDECQGYYITFDKENYNRPIQVKREWSLIDW--------NFNHLGIALTTLFSSATGEGWPAVMQTGIDSQLENQGPLLNNKIWIAIYFIVFVVIFSFFFINVFVGLII-------------LTFQNLQIDPNAALDRNTKNSFDFVMRSKPM--ERFMPED-------------------------VKSW-------QYKAWALVESSQWEILISVLIALNTVVLMMEFADQPDWYSNILGMIGDVFTFVFTFEFALKMFALGC-NYFKDFWNNFDMFIVLGSILDFMIKKILPPGTVPFDTSSLRLFRALRLIKLLRRFRDLRILLWTFLQSFKALPYVCMLIFLLFFVYGIIGMQIFSSIDKDSEDDPWNQINRNNHFSTYFSSTQVLFRVATGENWPNIMLACTSGAKCDQKLRSVQIDNMQDCGSP-----IAYVYFISFVFFCSFLMLNLFIAVIMDNFA 957
              LF    +  +R+    IV    F+  IL  I  +   LA  L  P + +  +N  L   +YFF  VF++E  +K++ +GF  H ++Y R  WN  D  +V   + +++L      Q   A  + K     VK LR  RVLRPL+ ++ +  L+ V   +  ++  + ++ ++ +  ++I++++G++LF GK+     F   D     E+E         +    R   +        W        +F++ G ++ T++   T EGW  V+   ++  + N+        W  IYF+  +++ SFF +N+ +G++               TFQ L+      LD + +    ++ + + M  E F                             ++ W       ++K   +V+S  +  L+ +++ALNT+ +  E  +QP W + +  +   V   +FT E  +KM+ LG   YF   +N FD F+V   IL+ ++  +      P   S LR  R LR+ K+ + +  L  L+ + L S +++  + +L+FL   ++ ++GMQ+F     D ED    ++ R+N F  +  +   +F+V TGE+W ++M                  + +   G P     +  +YFI      ++++LN+F+A+ +DN A
Sbjct:   29 RALFCLTLENPLRKACISIVEWKPFETIILLTIFANCVALAVYLPMPEDDNNSLNLGLEKLEYFFLIVFSIEAAMKIIAYGFLFHQDAYLRSGWNVLDFTIVFLGVFTVILEQVNVIQSHTAPMSSKGAGLDVKALRAFRVLRPLRLVSGVPSLQVVLNSIFKAMLPLFHIALLVLFMVIIYAIIGLELFKGKMHKTCYFIGTDIVATVENEEPS---PCARTGSGRRCTINGSECRGGWPGPNHGITHFDNFGFSMLTVYQCITMEGWTDVLY-WVNDAIGNE--------WPWIYFVTLILLGSFFILNLVLGVLSGEFTKEREKAKSRGTFQKLR--EKQQLDEDLRGYMSWITQGEVMDVEDFREGKLSLDEGGSDTESLYEIAGLNKIIQFIRHWRQWNRIFRWKCHDIVKSKVFYWLVILIVALNTLSIASEHHNQPLWLTRLQDIANRVLLSLFTTEMLMKMYGLGLRQYFMSIFNRFDCFVVCSGILEILL--VESGAMTPLGISVLRCIRLLRIFKITKYWTSLSNLVASLLNSIRSIASLLLLLFLFIVIFALLGMQLFGG-RYDFED---TEVRRSN-FDNFPQALISVFQVLTGEDWTSMMY-----------------NGIMAYGGPSYPGMLVCIYFIILFVCGNYILLNVFLAIAVDNLA 665          

HSP 3 Score: 125.176 bits (313), Expect = 8.916e-29
Identity = 144/644 (22.36%), Postives = 278/644 (43.17%), Query Frame = 0
Query:   64 FLGIFVSEMCLKLYAVG----PNAYFQSKFNKFDFSVVVMGLINLFLSKMFNI------------NLGIPVLRQLRLMRLFKFTKYYKKMKNLVQSIINSMAAIVSLLVLLFLFLMIFALLGMNIFGGQFYAREH-IG------------KPFSRT-------------------------NFDDFFNAMLAVFQIITGEDWNFVMYEGIVAYGGPRSPVGLAVSLYFVGVTVLGNYVLLNVFLAIAVDNISLDDDEEKAEEEAEEERADAQQAVKDKYAPPSARSNGEIETASQDRFAEADRQVIGEYGSTAPPGHHAPGDNFLENLKDPSRMTGNIPTFVNAEEQTVNTLFIFPPDGIVRRIIHPIVTSPHFDNFILALILISSALLALENPTNPDADINKILNLTDYFFTTVFALEVLLKVVNFGFALHPNSYCRDTWNCADMFVVSCAITSLVLSQDKNASTTVKSIVKILRILRVLRPLKSINKLQELKAVFQCMVFSLQNVVNVLIITVQFLLIFSMMGVQLFNGKLFQCNDPSKEFEDECQGYYITFDKENYNRPIQVKREWSLIDWNFNHLGIALTTLFSSATGEGWPAVMQTGIDSQLENQGPLLNNKIWIAIYFIVFVVIFSFFFINVFVGLII 653
            FL +F  E  +K+ A G     +AY +S +N  DF++V +G+  + L ++  I             L +  LR  R++R  +       ++ ++ SI  +M  +  + +L+   ++I+A++G+ +F G+ +   + IG             P +RT                         +FD+F  +ML V+Q IT E W  V+Y    A G           +YFV + +LG++ +LN+ L +     + + ++ K+    ++ R + QQ  +D     S  + GE+      R     +  + E GS     +   G N              I  F+    Q          + I R   H IV S  F   ++ ++ +++  +A E+   P   + ++ ++ +    ++F  E+L+K+   G       Y    +N  D FVV   I  ++L +    +    S+++ +R+LR+ +  K    L  L A    ++ S++++ ++L++   F++IF+++G+QLF G+         +FED                  +V+R       NF++   AL ++F   TGE W ++M  GI   +   GP     + + IYFI+  V  ++  +NVF+ + +
Sbjct:   93 FLIVFSIEAAMKIIAYGFLFHQDAYLRSGWNVLDFTIVFLGVFTVILEQVNVIQSHTAPMSSKGAGLDVKALRAFRVLRPLRLVSGVPSLQVVLNSIFKAMLPLFHIALLVLFMVIIYAIIGLELFKGKMHKTCYFIGTDIVATVENEEPSPCARTGSGRRCTINGSECRGGWPGPNHGITHFDNFGFSMLTVYQCITMEGWTDVLYWVNDAIGNEWP------WIYFVTLILLGSFFILNLVLGVLSGEFTKEREKAKSRGTFQKLR-EKQQLDEDLRGYMSWITQGEVMDVEDFR---EGKLSLDEGGSDTESLYEIAGLN-------------KIIQFIRHWRQW---------NRIFRWKCHDIVKSKVFYWLVILIVALNTLSIASEHHNQP-LWLTRLQDIANRVLLSLFTTEMLMKMYGLGL----RQYFMSIFNRFDCFVVCSGILEILLVESGAMTPLGISVLRCIRLLRIFKITKYWTSLSNLVA---SLLNSIRSIASLLLLLFLFIVIFALLGMQLFGGRY--------DFED-----------------TEVRRS------NFDNFPQALISVFQVLTGEDWTSMMYNGI---MAYGGPSYPGML-VCIYFIILFVCGNYILLNVFLAIAV 661          

HSP 4 Score: 90.5077 bits (223), Expect = 3.955e-18
Identity = 70/287 (24.39%), Postives = 133/287 (46.34%), Query Frame = 0
Query:    9 VKNNAFRVKLKSFMLSKFMFWFIVSAVFLNSLFGAIQHYRQPQWITDVTSITDNLFLGIFVSEMCLKLYAVGPNAYFQSKFNKFDFSVVVMGLINLFLSKM-----------------FNIN------LGIPVLRQLRLMRLFKFTKYYKKMKNLVQSIINSMAAIVSLLVLLFLFLMIFALLGMNIFGGQFYAREHIGKPFSR-TNFDDFFNAMLAVFQIITGEDWNFVMYEGIVAYG-----------GPRSPVGLAVS-LYFVGVTVLGNYVLLNVFLAIAVDN 259
            +  N ++ ++   + S +  + + + + LN++   +QHY Q + +  ++ I +  F  IF  EM LKL A     YF   +N FDF +V+  +I++ LS++                  N++      +     R  R+MRL K     + ++ L+ + I S  A+  + +L+ +   I+A++GM +FG         G   +R  NF  F  A+L +F+  TGE W  ++     +YG           G     G   +  YF+   +L  ++++N+F+A+ +DN
Sbjct: 1102 IPKNPYQYQVWYIVTSSYFEYLMFALIMLNTICLGMQHYNQSEQMNHISDILNVAFTIIFTLEMILKLMAFKARGYFGDPWNVFDFLIVIGSIIDVILSEIDTFLASSGGLYCLGGGCGNVDPDESARISSAFFRLFRVMRLIKLLSRAEGVRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQMFGKIALVD---GTQINRNNNFQTFPQAVLLLFRCATGEAWQEILLA--CSYGKLCDPESDYAPGEEYTCGTNFAYYYFISFYMLCAFLVINLFVAVIMDN 1383          
The following BLAST results are available for this feature:
BLAST of TCONS_00020424-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAC1S8.970e-4540.36Voltage-dependent L-type calcium channel subunit a... [more]
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