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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020411 ID=TCONS_00020411|Name=TCONS_00020411|organism=Clytia hemisphaerica|type=transcript|length=1887bp
ttttttttcaactcaTTTGGATTATGCGAGCAATGGTTCTAAGagAGCTG
AATAAATAATTCACCTAAATGTTCCGATACTTCGTTTATATGTCCGTCTA
TTTCTCTTCATTTGATTGGTCAATACAAAGACACATTGTCGTGGCTTCAA
TCACAACACAGTCGACTACAAATACACCTTGGAACACTGAGGGTTGTGAT
GTCGATTGGTACCGCTTCAAGGAATCTTGTTATCTTCCTTACAAGCAAGA
ACAATACCACAATGACGCCTCCAAAATCTGTCAGAAACACTCCGCTACTT
TAGCTACCATTATGGATGAACAGGAAAACCAATTCATAAAAGCATTAGCC
AATCAATTCTTGAGTTACGGTGAAAGCTGGCTGGGATTGGTTCGTTCCGA
AAGACTGGGTACTACTTTCACATGGGCAGATGGTCAACAAGTGAGCTATG
AGAGATGGATGTTTAATAAGCCTTCGATTGGTGATGGAGATTGCGTACAA
TTGATCAGTAGTGGGTTCTGGACGAACATCAATTGTTACAATCGATTCTC
TTTCATTTGCAAAAAAGATAAGAACCTTCCACCAGCAGAAGATAACCTGG
ATTTAATCTTGAACATTTCGATACCTCTATCGTGTGTCTTCATCATGTTT
TGTTTTGTGGCATTCCTTTGTTTCAAGAGTTACAAAGAATTACAGGAAAT
AAAACAAGACAATTTAGACGGAAAGCCGTTCGAGCTTATCCAAGCTGCAA
TGATACTACCGATCACCAAAACTCCTGATTTGTTGACTTCGAATGGTAAG
AATCTCTGGAAAAGCGCATTGGAGCGTTTAAAAGCAGAACAGATCAAGAA
TAACCCGTTAAACGAACCACATACATTCTTAGCTCGAGGTTCTTTGAGTA
GTATAGTCGACGCAGCTCGAAAGAATGGACAGATTGGCGGCAATAGGGCG
GCAAATATGAACACGGATAATTCATTCGCTGATATTGTGAATAGTTTGAT
GTCAAAAAGACGCGATACAACATTCCAAGGTGGTTTGATGGGCTTCCCAA
TTATTGAGAATCCGAATGTTCCAAAGATAGCAGTAGACTCACCAGAACAT
GATAAACTGAATAAAGATATATCTCAAAGCACTAACAACTCAAGACAAGA
GACTGATCCGAATTTCGATTTTAGTTCAAATGCATCTACCGAAAGCCTGG
ACTCTAATCATAACCCGAAACCTAGAGATCAGAGTTATTCGTCTGATGAC
AATAGTGCTGATGAGAACACTGATACTCTTAAAAATCATCAGTCAAAATC
TTATAAATCGAATTCGAAAAGGTTTGTCGAAGTTGTTGTCGAATTATATG
ATGTTCATGAGAAATTAAAACATAAAACCACCACCAGTGTTAAGAGGAGA
GAAAGTCACGGAAACGGTTGTCCGAACCCGAATCacgaaaaaagaaatta
cagaccagataaTAAGCGAAATTCTGTAAACTCGATACAAGACACTAAGT
GTAAACGAGAGTCTGTAAATTGTACACCAGATACGAAACGAGTTTCGCTT
AACTCTAAACCAAACGATCATAGAGATTCTGTATTTTACCGACCAGATAT
TGTGCCAAACACAACAAAACCAAGACCGAGTCAAAATTCGACAAGTTCGA
TAGGCACTAGCGATTCAAATAGCTCTCTGTCAAACGATGGAACGAACTCA
GATATCTTAAGTACCAAACAATTTAGAGATTCGATACGCAAAGAAtctga
gaaaagaaaagaacaatatTTTCCGAATTCTCCGGAAAAGAAACTTCCTC
CGGTAGATTATAATTCGATACCGTTTAAATCGAACGTTGCTGATTATACG
ACTGTAACTTTAGTATGATTATGCTTAGTaccttagc Run BLAST on NCBI protein sequence of TCONS_00020411-protein >TCONS_00020411-protein ID=TCONS_00020411-protein|Name=TCONS_00020411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=599bp
MFRYFVYMSVYFSSFDWSIQRHIVVASITTQSTTNTPWNTEGCDVDWYRF
KESCYLPYKQEQYHNDASKICQKHSATLATIMDEQENQFIKALANQFLSY
GESWLGLVRSERLGTTFTWADGQQVSYERWMFNKPSIGDGDCVQLISSGF
WTNINCYNRFSFICKKDKNLPPAEDNLDLILNISIPLSCVFIMFCFVAFL
CFKSYKELQEIKQDNLDGKPFELIQAAMILPITKTPDLLTSNGKNLWKSA
LERLKAEQIKNNPLNEPHTFLARGSLSSIVDAARKNGQIGGNRAANMNTD
NSFADIVNSLMSKRRDTTFQGGLMGFPIIENPNVPKIAVDSPEHDKLNKD
ISQSTNNSRQETDPNFDFSSNASTESLDSNHNPKPRDQSYSSDDNSADEN
TDTLKNHQSKSYKSNSKRFVEVVVELYDVHEKLKHKTTTSVKRRESHGNG
CPNPNHEKRNYRPDNKRNSVNSIQDTKCKRESVNCTPDTKRVSLNSKPND
HRDSVFYRPDIVPNTTKPRPSQNSTSSIGTSDSNSSLSNDGTNSDILSTK
QFRDSIRKESEKRKEQYFPNSPEKKLPPVDYNSIPFKSNVADYTTVTLV Run BLAST on NCBI transcript from alignment at sc0000356:177309..188986+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020411 ID=TCONS_00020411|Name=TCONS_00020411|organism=Clytia hemisphaerica|type=transcript|length=11678bp|location=Sequence derived from alignment at sc0000356:177309..188986+ (Clytia hemisphaerica)
ttttttttcaactcaTTTGGATTATGCGAGCAATGGTTCTAAGGTGAGGC
AAACTATCAAGAGTATAATTAAGGCGGGTTGTAGCAAGAGTGTAAGACGT
GGTGCATAACCTCCGCTAGTACTAACTTCTTTACAGTAATGCAtctttta
aatatattttaaccctattagccccagggggggtagaatctaccacgctg
gagttcttttgtttatatctcggagaaaaatttttcaaacgacttgaaac
tttctgactttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGTTGtctagatcag
gttttatgactttattgtgaaacatgacataaaacccagctaaaatcgct
taaaactcaaaattttaaagtgctgataacttctaaactttttattcaat
cattttcaaattttgacacgtgataggcattgataatacaaattaaaaaa
atcaaaagaacatttttgaaaataatgacgtcatcatttatgacgtcatc
aaattttgaaaattctactcatcttcagcatagactTTAAGAAGAATCCT
TCATGCAAATtacaaaaccggcaattatgttaaagaacagttttttacct
ttcagaatcttcaaacagaatcgaaatatctttattggttcgactgtaat
agacatttttgtaaaccatatatttgggcNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtggaaaat
tgtatcatgatggagaacatctgtaccaaatttcatggccatagctcttc
tagatcgaaaataatcgagggtggtagattctacccccctggggatacaa
aagtcaaaaaagcttggggctaatagggttaagctaAGAACCTTTGCGAG
ACGAGGATTATTTTACCCTgagtttttgtaaaaataaatttacacaGGTT
TAAAAAAAACCAAGGGGAGTTCATTTAGTAATAAGAATTATGTGTATGAG
AATTAATTGAATAGCCGATCAAAACGGATAATATGAAGCTTCATAAACGT
TGTGAAAGATGAGTTTGATTAATCCCTTCCATTGATTAGGATGGTTCAAT
TGAATACTTAAATAAACAAGCTGTATAATATGCCTAATATCTGTCAGCTA
TTATTATTGATGAAAACTTCTCTATTGATACCGATAACTAAATGTCATAC
TGTTCCAGAGAATACAAGAATAATACCTATTGCAGCAGTACCCATTTTAA
ATCTATACAAAAAAATAGAATACATAATCAGAATAGCTTACCTTCTCATG
TAAATCAATATCTTTGCTAATGAATCAATCTTACCACACAATCTTCAACG
AGTGTCATTCGATCAACATGGCAGAACAAAATGACCAAGATGCGGTGGAT
ATAAAGTTTATAACCATTAATGGCAAAAGCTCTTTTGGTGACCAGGAAAG
ATTTAGAAAAGCATACGTTTCGAAATTGAACGATCATAACCCTGACGTCG
TTTTTCTCCAGGAGATTTCTATGTTGAAGGTTTATGAAAATGACCCATGG
TGGTACGGGTTAAATATGTATAACATTAACACAAGTAAAGACAAAACAGG
AAGCATCAGTTCCGAAGCTACAGCTCTAGTAAGACATGGTAtatatgaaa
aatttgaatataaccACCAGGGAGAGAGATTTGCATCTGTGAAGTTCAAT
ATTGGTGGCAGAACTTTAAACGTTACATCTTTTCATGGAAAAAATACTAC
AGCGAAAAAGGACGAAAAGCAAATAGCAGTTATGAAGATTTTACGGGATC
TTCATGAAAAGGGAAATTTTGTCATTGGTGGAGATTTCAAtgtgaataaa
aaaaagttgatctCATGGATTAGAGAACTAACGAACCCTACAGAATTCAA
AATAAGTGGGGAATGTTACACTTGTCCAACCGACTGCGAAACGGGGAATT
GCAAGAACATTGACTACTTTGTTTATGGAGGAGCTATTGAGGTAATTGAA
GCTGAGTCCGGAATGGATATGTACTTCGATAAAACGTGCTTGAGAGCAGA
GTTAGAAGGAAATGGAAACAAGCTGGAAATAGGGGTAATCGATACAGGAA
ATGATACCCGGCCTTTTATTTTCCCTATTTTGAATGGAAAACAAATGAAG
GATTTTAATGGTGCATTTGGTGATGTTTATTTTGATTCTTTTCACATTAA
AGATGAAACAACAAAAGCCGTTAAAAGCATCATTAATCGGGCTTGTGAAG
ATGATAAAGCATTTGTCATTGGTGGAAGTTGTAAGCTTACTCAGAAGCAA
TTACAAAACATCATCAATGAAATAAATCGCAAGTCTATTGCTATAGGTGC
TACTAAAAGCCCCGCTGACAGTACCACATCAAGCAGCACGCAAACTGCTA
CAACTGCTGctgctgcttctacaagcatcACTACCGGTACTACTGCTGCG
CCAAGTACCTCATTAAGCACAGCAACTATCACACAAGTTCCAGGTTCTAC
AactgatgctgcttctacaagcatcACTACCGGTACTACTGCTGCGCCAA
GTACCTCATTAAGCAGCACAATTAACACGCAAGTTCCAGCTGCTGCAACT
GCTGCTGCTGCTTCTGCAAGCACCACCGCTGATACTACTCCTGGACCAAG
TACCTCATCAAGCACAGCAACTATCACACAAGTTCCAGCTTCTACAGctg
atgctgcttctacaagcatcACTACCGGTACTACTGCTGCGCCAAGTACC
TCATCAAGCAGCACAACTATAATACAAGTTCCAGGTTCTACAACTGCTGT
TGCTTCTGCAAGCACCACGAGTACTACTGCTGATAATGCAACTGCAAACG
ACGAAccgttaaaaaaaattaagcttGTGAAAACCACTACAGATAATCCA
AAGATTAAATTGAGTAAACTAAGCGATTTCTTCGTCTATAGAGGAACTGG
CTTATCCATCAACAACCCAAAAAGCTATCCTATTGAAAATAGTCACAGCG
CAGAAACACATCAGccgaaaattcttaaaattcgATTTACACAACGAAGT
AATGGTAACGCAAATCCCACGCCAAAATTGCAAGCAGACGACGTTGTGAA
CGAAGCAGCCCCCAGCACCAAAGATGATGCGGGAGAAGATGAAGGCACAA
GTAAACAAACGAACGAAGATAATGGTGAAGACAacctttttgattttgat
cagATTAACATTAAATGATAGCTTAAAggatgattgaaaaaaaaaaaaga
tttggacAGTTGGTATATTTTGATACattgtttttgaaaagaaaaaaaac
atataaatttggaaaaacaaTTTCGAGTAGATCTGCAGTTTTTCTCAATT
TACCAACAGAGGTTGAGCAATGATCGGTCGTTGCACAGAGAcatttttcc
aaagaaatttcaTAAGGTATAATAACAAAAGGAGATAATTGTAGCAAAAA
TAAATCCAGGAGTGAATTTATAGACAGAGAAATGATTTTTGACATATAAT
CGAAGTTgtgaaagtttcttttttttcaaaagcttccATAGCTTTTTTTG
AGTGAGAATCTTTGCTCGCAAAATCTTTCCAGCGTAGGAGATTTTGACTG
GTTTTTGATGTATGGTACTTTTTCCAATGATAATAATTGTTTTAATTGAT
GTCGTTATCTTAATCAATTCATTACATTAGTgtattttaaatataaaatc
tgtaaaatttgtTCTGTATATACAATGTGGCGTGTGGAGAAAATTAATCA
GTTGTTCATTAATCTTTTATCTATTGAGTATTAGTGACACCAAAACATCA
ACATTCCTTTgctgtacacattttttataagcaactagGTTGTTAAAACT
AGAGACTCAAATTTGGCAATTCTTTTTCACACCATATCTCAGAGTTCCGA
TGGAAAGTTTTTCCATAACAGGGATAAAATTTAatatcgaaatcccaata
ggGATAGAAATTTCTTGTTCTAAGCTGAAaagatccagtggggatggttt
tgaagtgcaattttttacaatgAATTTTGTATGGGATTTAATCAAactca
atttcccagtggggctaaaaatTTGGGGTATTTTCAATACAGTGAgactg
gggtcccagtgggtctttgacacaggggtgtcttttcactatctcgtaaa
gtaaaagatAACTTAGCCATTGCAAACAATAACCCTTTGCCCAATAAGCA
TAAAAATTATGTAATACATATCAGGGATAATCGAAGCAAACCAAGAGCTG
TCTCCAACAAAATCTTCAGCAATTTGCAGTCTCATtattaatgtaaattt
tttaaatacacgctttttctctTAAAAGAACGGTgtttttcaattcatca
tgaatattcttgaAATCCAATCCCAGCCAAAATTTAGCCTGTAATATTAC
CTCAAgcaaaaatttggcatttttgttgaACCTTTTAGCATTGCTGGGTA
ATAGTTGCTAATTTAATGgcaaaatgctctaaaaatggtattcttatgtt
cagttgccaaattccatgatggtggtattcttaccatattcctaattttt
cggtcaattttatcatagatattcttataaaaaacgtgtgatAAAGAGTG
TAGTCTTAACTGGATGCCTCCGGTGATACGGTCATGCATCTTCGACGCGT
CTACCGGGAAAAGAACAAAGCTATTCTCGTTTTAACTTGAAATAAGCTAG
AATagagatttttcataagaacgtccacactttttgaagccttcggattt
ttttgactttttgtgttttaagctcaaaaatgttcttaaatgtttttaat
ttcaccACTTTTTAAGTCTTTAGGGTCATAAGGGCTTAATGttctaagaa
tttttttaaatattttggtcatcaaagccttacattcttttattattttt
tcttataaaaaaacaagcaaGGTTTTCCGATCGTAATCTATGGATCAAAG
CTCAATTATCATTATTCCGGGTattaaaattctttttaatcttgttgttc
ctataaaaagaacaagtaaacaaaaacaaaaggttCAGTATTTTTAGAAC
AAacttgcgaaaaaagtgacagaATGACCGGAAGAATCATTTTAAAGGAT
TGTAAATATTGAATGTAATTGTCGAGAGGTATACGAGTTCTTATTCAAAA
GACGAGCGtgatgtgttttttttcattttatataaaataataaatcaacC
AGCGttgataaaaaaaagtttgatactttaAGTTTGTTCACGAACGTCAA
ACCTGTAAAGTattcatggtcgaaatatatttagattttttaggcatttt
gaaaaaacgttttttcgaattcaaaattcGGGCGAGAATGACGATTTTAG
CATTTGGACGTCATTTCAttggatattttgattttggaggGGCTGTATTT
AGACTACAACTTTAAGGGTAGAAACTTTGGCCCAGCCTTATCGGAGCATT
CTTTGAGTTTGTAGATTCTTAGAGGTTTTAAGTCTCTTACacgtttattt
tataaaaacattcaaaatttttgaaaccttcagatgttcttaatattttc
tctttgttcTTAACAGCAGTTTTGTcgattttcctaagaaattgggtatt
ttagagtctccaaagccttaaaatgttctaacttgttcttaacataattg
gccatcgaagccttatgttcttctaTAATTATTTGTTAATATAAAAGACG
TGTATGCTAAAACTCAGAGTATTCTTTAAGTAAAATAGAGCACTTCAAAA
TCATTTgtgctttttataattttgcaTGGAATTCTCCCCTTTCTCTCAAA
CGTAATAACCATGATTGTAGACAGGGGAGATAAACCGAAGAAACTATGAT
TTTAGCGCGATCTGACGCTCTCCCTACTGTAGTGATGCTGTTTACGAGCA
GCCAGAACCTTTTAGAAATCAGATTTTCTAAAAGTTCTGAAGGCCGATAG
TAAACAAAATTTGACCGTTGCTAAACTACTAAACCGCTCGTTATACCGAA
CGAAGAGCGGTCCGATATTCAGGTACAGTAAATCGCTTGGGAAGTCAAAG
GTCGTTGATACTATAGACAGAATTTCAAAGTTCGTCCATCAGGGTTCAGT
ttgtctgaaaaaaaatcacagttAAGATACTTTCAAGTGTATATGTATTC
TTACAAAAAGCATGCAATTAGTTAAGTTGTGTATTTGTAAatctcaaaaa
gaaaacttgTGATCTAGAGCTCTGTTTCTATGATTTAACATGTAGAGGAA
GTGGTTATAATTGTTCTGGCGTGGCCAATTAAGTTCTTGTGATCACACAG
CtatttcaatttctttcctCTTGAAGATTGTATTACTTTGCAGCTATACA
ACTTCAAAGAGTGTTGCCGCTATTTTTGCGATAATTGCATTGATATTAGG
TTCTGAGCAGAATTTTGTTCGTTtgaggtctttttttaattcaaaaatga
aattgaattcgAGCGCAAAGGAGAAGCAAAGTTTGAGATATAGAGTGGTG
AAGACTATATAATTTTCTCAGAAGTCAAGGATAGATCGTTCGACCTACAT
AATGAAAGTAAGATTTCGCCCAGGTTAGGTTAGCTTGACACTTTCAGCGA
CTTTGTCGAATaatgaaaagaacaaacttttttctttaaacacGTGTTAT
TTCGTTGCTTTTGATGCTTTCGATACACGAACCATCAATAAGTTTGCAAG
ATGTTGCTCAAAAGTtggggaaaagtttttttgcgatCCTATGAAAAgct
atttttgatgaaaacttCAATAAAGTAATAGAGCAATAAGCCATATATAC
GAGAGGGAACTCTGTTCAAAACCTTGTCAAGGTCCTACAAAATCTGGTAG
GATCCTGCGATATCTTGTTATACCTCAGATATTGCGAGTTCTTATTTGAA
CGGAAATTTAATTATAACACTCGAGTAACTCGAATCCGCACGGAGTACAC
AATAAATTTGTTCCATTTAACgaaatttcgatttagagagtaAAGTGTAT
TGTTGAATGACGGGACGAGAAaagttgttcgagttaaggagacattcaag
ttgtagaggttcaagttaaagagactctactgtaataCGGACCTACAGTT
AATTTCCCCTGTTTTAGAAGGTCATTATGTCAAGGATGCCTAAAAAAATG
GGTCGTCTACTCGAAGTAATGACCATACTTAAAActgacttctttttttt
ctagagAGCTGAATAAATAATTCACCTAAATGTTCCGATACTTCGTTTAT
ATGTCCGTCTATTTCTCTTCATTTGATTGGTCAATACAAAGACACATTGT
CGTGGCTTCAATCACAACACAGTCGACTACAAATACACCTTGGAACACTG
AGGGTAAGTTATTAAAGTAGGAGCAGGGGGAGAAAGTGCAAATTTCATCA
GCAAATTTCATCATCAACCACCCCGACCGAAAGTTATTATACCACCCCTa
cgtattcattcctctttgtgtTTTGCGTATAATAACGACAAACAGTTTAT
AAATACGCATgcgttttaattttgttttgaaaatgaaacaatagatgcgA
AGTAGACACTTTCTCTGTGGTAGGGTAAATTGGCTTTTTCTAAACCAAAA
TTACCATAACGTGTAACAATGAACATCTCCCAATTTATCTAAAACGGTTT
CTAGCTGAGAATGGCGGAAGTTACTTGGTATGCTAAATGCGATAGGTACC
AATTATGCGCGAACGGTAAAGGTATCTATTTTCATATCTCATAATAAATC
TATGTAAAAGTTACAGAAACCAAATCACTAAACTTGGGGAACATCTCCTT
AATAAACGCCTAAAGCTGTTAAAGAATATCGATTTTTGATTTGAGGCAAG
ACTGGGGGATACCCGTCATCTTCAAAGCCAACAATATTTGGTAATTTGAC
TTCAAAAGACTGATTTCAATCAATTTAAGAGACATTGGATACATTATACT
CAATTTGATATTTTGCAACAAGCAGGTCCTTTTAAAAATGTACCCTCTAA
AAGCGATACAAACATGATGCTCAAGTCTCGACTCTTTTCGGAAGATCTTT
GTAACTGAAGAAGctaatcaaatttcagaaaacactAAAACTTTTGACCA
ATGGATTTTAACAACCCAAAatctaccctgagtatcagaggttaagtttt
caaagaaaatagtaacctctgaagacaaataatagaaattttatcgcgca
tgtgtcaatctaatcactgtagaaaaaNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacttttgtcttcgctg
attgcgcgatgaatagaatctcgattcgtcggcacagcgtaaatatatga
ttttgagctgtgcttttcacggtacccAAAATCCTAAAAgacaaaataca
aaacaaaccaaattcCGCTAGAGACACATTTACTAGAACaattaaaacaa
atttagcGAATAGGAACccaatattcaaaatgaaaagagATCTAAACgga
aagaaaatggaaaaattatgaaaagatAAAGACCGAAGTCTGAGATCAGG
TGCGGTACCTAGTGTAAGCATCCCCTGCCACCCGCGAGTCACCCGTCATT
TTCCTGAAAGAAAAGGAGTAGTGTTGTACAACCATGCCTAAAAGATTAAA
TTAATTTCAGCCTTCTACCAAATTCTAGGTTGTGATGTCGATTGGTACCG
CTTCAAGGAATCTTGTTATCTTCCTTACAAGCAAGAACAATACCACAATG
ACGCCTCCAAAATCTGTCAGAAACACTCCGCTACTTTAGCTACCATTATG
GATGAACAGGAAAACCAATTCATAAAAGCATTAGCCAATCAATTCTTGAG
TTACGGTGAAAGCTGGCTGGGATTGGTTCGTTCCGAAAGACTGGGTACTA
CTTTCACATGGGCAGATGGTCAACAAGTGAGCTATGAGAGATGGATGTTT
AATAAGCCTTCGATTGGTGATGGAGATTGCGTACAATTGATCAGTAGTGG
GTTCTGGACGAACATCAATTGTTACAATCGATTCTCTTTCATTTGCAAAA
AAGGTAAGTAGCGGTACGGCAGATTTTCCGTCAGCGGACGGAAGCTAGTT
TAACTGACCCTAACTTATCTATCAGGTATTCGGCCGGTGACttgctaaat
caggtcttcggccgttaaatcCGGTCTTCCgctgagagaaaaaaatttac
agcGCTACGCTATCATATCTGTTCTAATGTGTATCTAAGGTAAACTTGAG
AACTTTTGAATGAGAACTCTCGCTTACTTAGACGAATTTCCATTCTCTGA
AAAACCCGAAAAATGATGGCATGTGAAATTTAGTTTGCAGTACCAAGTAC
CAAGGGAATAGCACAAATACCTTAATATTAGCAGTAACCACTAAATGGAG
GGCTGAAGTGAGATTCGAAATCACCACTAGTGATTTTggatacaaaacaa
aaacaattattttaacCCTTTTCCtgctaaaaaatgtttttcctcttttt
gtCTACAGATAAGAACCTTCCACCAGCAGAAGATAACCTGGATTTAATCT
TGAACATTTCGATACCTCTATCGTGTGTCTTCATCATGTTTTGTTTTGTG
GCATTCCTTTGTTTCAAGAGTTACAAAGAATTACAGGAAATAAAACAAGA
CAATTTAGACGGAAAGCCGTTCGAGCTTATCCAAGCTGCAATGATACTAC
CGATCACCAAAACTCCTGATTTGTTGACTTCGAATGGTAAGAATCTCTGG
AAAAGCGCATTGGAGCGTTTAAAAGCAGAACAGATCAAGAATAACCCGTT
AAACGAACCACATACATTCTTAGCTCGAGGTTCTTTGAGTAGTATAGTCG
ACGCAGCTCGAAAGAATGGACAGATTGGCGGCAATAGGGCGGCAAATATG
AACACGGATAATTCATTCGCTGATATTGTGAATAGTTTGATGTCAAAAAG
ACGCGATACAACATTCCAAGGTGGTTTGATGGGCTTCCCAATTATTGAGA
ATCCGAATGTTCCAAAGATAGCAGTAGACTCACCAGAACATGATAAACTG
AATAAAGATATATCTCAAAGCACTAACAACTCAAGACAAGAGACTGATCC
GAATTTCGATTTTAGTTCAAATGCATCTACCGAAAGCCTGGACTCTAATC
ATAACCCGAAACCTAGAGATCAGAGTTATTCGTCTGATGACAATAGTGCT
GATGAGAACACTGATACTCTTAAAAATCATCAGTCAAAATCTTATAAATC
GAATTCGAAAAGGTTTGTCGAAGTTGTTGTCGAATTATATGATGTTCATG
AGAAATTAAAACATAAAACCACCACCAGTGTTAAGAGGAGAGAAAGTCAC
GGAAACGGTTGTCCGAACCCGAATCacgaaaaaagaaattacagaccaga
taaTAAGCGAAATTCTGTAAACTCGATACAAGACACTAAGTGTAAACGAG
AGTCTGTAAATTGTACACCAGATACGAAACGAGTTTCGCTTAACTCTAAA
CCAAACGATCATAGAGATTCTGTATTTTACCGACCAGATATTGTGCCAAA
CACAACAAAACCAAGACCGAGTCAAAATTCGACAAGTTCGATAGGCACTA
GCGATTCAAATAGCTCTCTGTCAAACGATGGAACGAACTCAGATATCTTA
AGTACCAAACAATTTAGAGATTCGATACGCAAAGAAtctgagaaaagaaa
agaacaatatTTTCCGAATTCTCCGGAAAAGAAACTTCCTCCGGTAGATT
ATAATTCGATACCGTTTAAATCGAACGTTGCTGATTATACGACTGTAACT
TTAGTATGATTATGCTTAGTaccttagc Coding sequence (CDS) from alignment at sc0000356:177309..188986+ >TCONS_00020411 ID=TCONS_00020411|Name=TCONS_00020411|organism=Clytia hemisphaerica|type=CDS|length=5400bp|location=Sequence derived from alignment at sc0000356:177309..188986+ (Clytia hemisphaerica)
ATGTTCCGATACTTCGTTTATATGTCCGTCTATTTCTCTTCATTTGATTG
GTCAATACAAAGACACATTGTCGTGGCTTCAATCACAACACAGTCGACTA
CAAATACACCTTGGAACACTGAGGGTTGTGATGTCGATTGGTACCGCTTC
AAGGAATCTTGTTATCTTCCTTACAAGCAAGAACAATACCACAATGACGC
CTCCAAAATCTGTCAGAAACACTCCGCTACTTTAGCTACCATTATGGATG
AACAGGAAAACCAATTCATAAAAGCATTAGCCAATCAATTCTTGAGTTAC
GGTGAAAGCTGGCTGGGATTGGTTCGTTCCGAAAGACTGGGTACTACTTT
CACATGGGCAGATGGTCAACAAGTGAGCTATGAGAGATGGATGTTTAATA
AGCCTTCGATTGGTGATGGAGATTGCGTACAATTGATCAGTAGTGGGTTC
TGGACGAACATCAATTGTTACAATCGATTCTCTTTCATTTGCAAAAAAGA
TAAGAACCTTCCACCAGCAGAAGATAACCTGGATTTAATCTTGAACATTT
CGATACCTCTATCGTGTGTCTTCATCATGTTTTGTTTTGTGGCATTCCTT
TGTTTCAAGAGTTACAAAGAATTACAGGAAATAAAACAAGACAATTTAGA
CGGAAAGCCGTTCGAGCTTATCCAAGCTGCAATGATACTACCGATCACCA
AAACTCCTGATTTGTTGACTTCGAATGGTAAGAATCTCTGGAAAAGCGCA
TTGGAGCGTTTAAAAGCAGAACAGATCAAGAATAACCCGTTAAACGAACC
ACATACATTCTTAGCTCGAGGTTCTTTGAGTAGTATAGTCGACGCAGCTC
GAAAGAATGGACAGATTGGCGGCAATAGGGCGGCAAATATGAACACGGAT
AATTCATTCGCTGATATTGTGAATAGTTTGATGTCAAAAAGACGCGATAC
AACATTCCAAGGTGGTTTGATGGGCTTCCCAATTATTGAGAATCCGAATG
TTCCAAAGATAGCAGTAGACTCACCAGAACATGATAAACTGAATAAAGAT
ATATCTCAAAGCACTAACAACTCAAGACAAGAGACTGATCCGAATTTCGA
TTTTAGTTCAAATGCATCTACCGAAAGCCTGGACTCTAATCATAACCCGA
AACCTAGAGATCAGAGTTATTCGTCTGATGACAATAGTGCTGATGAGAAC
ACTGATACTCTTAAAAATCATCAGTCAAAATCTTATAAATCGAATTCGAA
AAGGTTTGTCGAAGTTGTTGTCGAATTATATGATGTTCATGAGAAATTAA
AACATAAAACCACCACCAGTGTTAAGAGGAGAGAAAGTCACGGAAACGGT
TGTCCGAACCCGAATCacgaaaaaagaaattacagaccagataaTAAGCG
AAATTCTGTAAACTCGATACAAGACACTAAGTGTAAACGAGAGTCTGTAA
ATTGTACACCAGATACGAAACGAGTTTCGCTTAACTCTAAACCAAACGAT
CATAGAGATTCTGTATTTTACCGACCAGATATTGTGCCAAACACAACAAA
ACCAAGACCGAGTCAAAATTCGACAAGTTCGATAGGCACTAGCGATTCAA
ATAGCTCTCTGTCAAACGATGGAACGAACTCAGATATCTTAAGTACCAAA
CAATTTAGAGATTCGATACGCAAAGAAtctgagaaaagaaaagaacaata
tTTTCCGAATTCTCCGGAAAAGAAACTTCCTCCGGTAGATTATAATTCGA
TACCGTTTAAATCGAACGTTGCTGATTATACGACTGTAACTTTAGTATGA
ATGTTCCGATACTTCGTTTATATGTCCGTCTATTTCTCTTCATTTGATTG
GTCAATACAAAGACACATTGTCGTGGCTTCAATCACAACACAGTCGACTA
CAAATACACCTTGGAACACTGAGGGTTGTGATGTCGATTGGTACCGCTTC
AAGGAATCTTGTTATCTTCCTTACAAGCAAGAACAATACCACAATGACGC
CTCCAAAATCTGTCAGAAACACTCCGCTACTTTAGCTACCATTATGGATG
AACAGGAAAACCAATTCATAAAAGCATTAGCCAATCAATTCTTGAGTTAC
GGTGAAAGCTGGCTGGGATTGGTTCGTTCCGAAAGACTGGGTACTACTTT
CACATGGGCAGATGGTCAACAAGTGAGCTATGAGAGATGGATGTTTAATA
AGCCTTCGATTGGTGATGGAGATTGCGTACAATTGATCAGTAGTGGGTTC
TGGACGAACATCAATTGTTACAATCGATTCTCTTTCATTTGCAAAAAAGA
TAAGAACCTTCCACCAGCAGAAGATAACCTGGATTTAATCTTGAACATTT
CGATACCTCTATCGTGTGTCTTCATCATGTTTTGTTTTGTGGCATTCCTT
TGTTTCAAGAGTTACAAAGAATTACAGGAAATAAAACAAGACAATTTAGA
CGGAAAGCCGTTCGAGCTTATCCAAGCTGCAATGATACTACCGATCACCA
AAACTCCTGATTTGTTGACTTCGAATGGTAAGAATCTCTGGAAAAGCGCA
TTGGAGCGTTTAAAAGCAGAACAGATCAAGAATAACCCGTTAAACGAACC
ACATACATTCTTAGCTCGAGGTTCTTTGAGTAGTATAGTCGACGCAGCTC
GAAAGAATGGACAGATTGGCGGCAATAGGGCGGCAAATATGAACACGGAT
AATTCATTCGCTGATATTGTGAATAGTTTGATGTCAAAAAGACGCGATAC
AACATTCCAAGGTGGTTTGATGGGCTTCCCAATTATTGAGAATCCGAATG
TTCCAAAGATAGCAGTAGACTCACCAGAACATGATAAACTGAATAAAGAT
ATATCTCAAAGCACTAACAACTCAAGACAAGAGACTGATCCGAATTTCGA
TTTTAGTTCAAATGCATCTACCGAAAGCCTGGACTCTAATCATAACCCGA
AACCTAGAGATCAGAGTTATTCGTCTGATGACAATAGTGCTGATGAGAAC
ACTGATACTCTTAAAAATCATCAGTCAAAATCTTATAAATCGAATTCGAA
AAGGTTTGTCGAAGTTGTTGTCGAATTATATGATGTTCATGAGAAATTAA
AACATAAAACCACCACCAGTGTTAAGAGGAGAGAAAGTCACGGAAACGGT
TGTCCGAACCCGAATCacgaaaaaagaaattacagaccagataaTAAGCG
AAATTCTGTAAACTCGATACAAGACACTAAGTGTAAACGAGAGTCTGTAA
ATTGTACACCAGATACGAAACGAGTTTCGCTTAACTCTAAACCAAACGAT
CATAGAGATTCTGTATTTTACCGACCAGATATTGTGCCAAACACAACAAA
ACCAAGACCGAGTCAAAATTCGACAAGTTCGATAGGCACTAGCGATTCAA
ATAGCTCTCTGTCAAACGATGGAACGAACTCAGATATCTTAAGTACCAAA
CAATTTAGAGATTCGATACGCAAAGAAtctgagaaaagaaaagaacaata
tTTTCCGAATTCTCCGGAAAAGAAACTTCCTCCGGTAGATTATAATTCGA
TACCGTTTAAATCGAACGTTGCTGATTATACGACTGTAACTTTAGTATGA
ATGTTCCGATACTTCGTTTATATGTCCGTCTATTTCTCTTCATTTGATTG
GTCAATACAAAGACACATTGTCGTGGCTTCAATCACAACACAGTCGACTA
CAAATACACCTTGGAACACTGAGGGTTGTGATGTCGATTGGTACCGCTTC
AAGGAATCTTGTTATCTTCCTTACAAGCAAGAACAATACCACAATGACGC
CTCCAAAATCTGTCAGAAACACTCCGCTACTTTAGCTACCATTATGGATG
AACAGGAAAACCAATTCATAAAAGCATTAGCCAATCAATTCTTGAGTTAC
GGTGAAAGCTGGCTGGGATTGGTTCGTTCCGAAAGACTGGGTACTACTTT
CACATGGGCAGATGGTCAACAAGTGAGCTATGAGAGATGGATGTTTAATA
AGCCTTCGATTGGTGATGGAGATTGCGTACAATTGATCAGTAGTGGGTTC
TGGACGAACATCAATTGTTACAATCGATTCTCTTTCATTTGCAAAAAAGA
TAAGAACCTTCCACCAGCAGAAGATAACCTGGATTTAATCTTGAACATTT
CGATACCTCTATCGTGTGTCTTCATCATGTTTTGTTTTGTGGCATTCCTT
TGTTTCAAGAGTTACAAAGAATTACAGGAAATAAAACAAGACAATTTAGA
CGGAAAGCCGTTCGAGCTTATCCAAGCTGCAATGATACTACCGATCACCA
AAACTCCTGATTTGTTGACTTCGAATGGTAAGAATCTCTGGAAAAGCGCA
TTGGAGCGTTTAAAAGCAGAACAGATCAAGAATAACCCGTTAAACGAACC
ACATACATTCTTAGCTCGAGGTTCTTTGAGTAGTATAGTCGACGCAGCTC
GAAAGAATGGACAGATTGGCGGCAATAGGGCGGCAAATATGAACACGGAT
AATTCATTCGCTGATATTGTGAATAGTTTGATGTCAAAAAGACGCGATAC
AACATTCCAAGGTGGTTTGATGGGCTTCCCAATTATTGAGAATCCGAATG
TTCCAAAGATAGCAGTAGACTCACCAGAACATGATAAACTGAATAAAGAT
ATATCTCAAAGCACTAACAACTCAAGACAAGAGACTGATCCGAATTTCGA
TTTTAGTTCAAATGCATCTACCGAAAGCCTGGACTCTAATCATAACCCGA
AACCTAGAGATCAGAGTTATTCGTCTGATGACAATAGTGCTGATGAGAAC
ACTGATACTCTTAAAAATCATCAGTCAAAATCTTATAAATCGAATTCGAA
AAGGTTTGTCGAAGTTGTTGTCGAATTATATGATGTTCATGAGAAATTAA
AACATAAAACCACCACCAGTGTTAAGAGGAGAGAAAGTCACGGAAACGGT
TGTCCGAACCCGAATCacgaaaaaagaaattacagaccagataaTAAGCG
AAATTCTGTAAACTCGATACAAGACACTAAGTGTAAACGAGAGTCTGTAA
ATTGTACACCAGATACGAAACGAGTTTCGCTTAACTCTAAACCAAACGAT
CATAGAGATTCTGTATTTTACCGACCAGATATTGTGCCAAACACAACAAA
ACCAAGACCGAGTCAAAATTCGACAAGTTCGATAGGCACTAGCGATTCAA
ATAGCTCTCTGTCAAACGATGGAACGAACTCAGATATCTTAAGTACCAAA
CAATTTAGAGATTCGATACGCAAAGAAtctgagaaaagaaaagaacaata
tTTTCCGAATTCTCCGGAAAAGAAACTTCCTCCGGTAGATTATAATTCGA
TACCGTTTAAATCGAACGTTGCTGATTATACGACTGTAACTTTAGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020411-exon-sc0000356-1491911889:177309..177351 | TCONS_00020411-exon-sc0000356-1491911889:177309..177351 | Clytia hemisphaerica | exon |
| TCONS_00020411-exon-sc0000356-1510915933:177309..177351 | TCONS_00020411-exon-sc0000356-1510915933:177309..177351 | Clytia hemisphaerica | exon |
| TCONS_00020411-exon-sc0000356-1575043694:177309..177351 | TCONS_00020411-exon-sc0000356-1575043694:177309..177351 | Clytia hemisphaerica | exon |
| TCONS_00020411-exon-sc0000356-1491911889:184913..185061 | TCONS_00020411-exon-sc0000356-1491911889:184913..185061 | Clytia hemisphaerica | exon |
| TCONS_00020411-exon-sc0000356-1510915933:184913..185061 | TCONS_00020411-exon-sc0000356-1510915933:184913..185061 | Clytia hemisphaerica | exon |
| TCONS_00020411-exon-sc0000356-1575043694:184913..185061 | TCONS_00020411-exon-sc0000356-1575043694:184913..185061 | Clytia hemisphaerica | exon |
| TCONS_00020411-exon-sc0000356-1491911889:186837..187211 | TCONS_00020411-exon-sc0000356-1491911889:186837..187211 | Clytia hemisphaerica | exon |
| TCONS_00020411-exon-sc0000356-1510915933:186837..187211 | TCONS_00020411-exon-sc0000356-1510915933:186837..187211 | Clytia hemisphaerica | exon |
| TCONS_00020411-exon-sc0000356-1575043694:186837..187211 | TCONS_00020411-exon-sc0000356-1575043694:186837..187211 | Clytia hemisphaerica | exon |
| TCONS_00020411-exon-sc0000356-1491911889:187667..188986 | TCONS_00020411-exon-sc0000356-1491911889:187667..188986 | Clytia hemisphaerica | exon |
| TCONS_00020411-exon-sc0000356-1510915933:187667..188986 | TCONS_00020411-exon-sc0000356-1510915933:187667..188986 | Clytia hemisphaerica | exon |
| TCONS_00020411-exon-sc0000356-1575043694:187667..188986 | TCONS_00020411-exon-sc0000356-1575043694:187667..188986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:177309..188986 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020411 vs. Swiss-Prot (Human)
Match: NCAN (Neurocan core protein OS=Homo sapiens GN=NCAN PE=1 SV=3) HSP 1 Score: 84.7297 bits (208), Expect = 8.574e-17 Identity = 45/148 (30.41%), Postives = 73/148 (49.32%), Query Frame = 3
Query: 189 EGCDVDWYRFKESCYLPYKQEQYHNDASKICQKHSATLATIMDEQENQFIKALANQFLSYGESWLGLVRSERLGTTFTWADGQQVSYERWMFNKPS---IGDGDCVQLIS--SGFWTNINCYNRFSFICKKDKNL---PPAEDNLDLI 608
EGCD W++F+ CY + + DA K C++ S L ++ +E+ FI + ++ +W+GL + F W D + +E W N+P G DCV +++ SG W ++ C ++CKK L PPA +N LI
Sbjct: 1086 EGCDRGWHKFQGHCYRYFAHRRAWEDAEKDCRRRSGHLTSVHSPEEHSFINSFGHE-----NTWIGL-NDRIVERDFQWTDNTGLQFENWRENQPDNFFAGGEDCVVMVAHESGRWNDVPCNYNLPYVCKKGTVLCGPPPAVENASLI 1227
The following BLAST results are available for this feature:
|
