TCONS_00020404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020404
Unique NameTCONS_00020404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020404 ID=TCONS_00020404|Name=TCONS_00020404|organism=Clytia hemisphaerica|type=transcript|length=679bp
AAAATTTCAATCTCAATAAATTTCAGTCCTCAATAAATCactgcaaatct
cagtgaattTCACATCTTCTAACAGGTCAAGGTTTGTCACATCTTTCTTT
TCACATCCTAAATTACCATCGATTTGATCACCACACCTCTCCACATCTTT
CAACAGTTTCACACTTTGCAACACCTCTCCTCAaaagttcattttcaaaa
ttaattcaaaatttcttaaCGTGCTATTACCACACTCATTCCTAAATTTT
AACGTCCTCAGAATAGATTCCAACGCTTATCAAGCAAGAAATGGTGAAAA
GCAGCCATCATGGCTCAACCGTCGATTCAGCCAAGAGTATAATGCCTTCC
AAGACATGGTCAACTGGCTAGGAAAGATGAGAAGGAGCTAAGGACGGATG
TTTCGTTGATTACACATCACATCCCTCTGTCAGCATGACGGAATTGCCCG
ACGATGAAACTTTTCTGAAAAACCATTAAATGATCCAGCATGGctTTTTC
AGGTGACGTCCTAGAAGTGAGGCCATTGTGGTGGCAATACAAAAAACACG
TCTAAATTGACACCAATACCAAAAACTTCGGATTCGAACAATTGAAGTTA
ACCTGATGCGACTTCCACATTCCAACAAAATTAGAAGTTATCACTCGGCA
TCTAGAATTTAACCATGCGTCAAATGAAC
Run BLAST on NCBI

transcript from alignment at sc0000356:25257..26679+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020404 ID=TCONS_00020404|Name=TCONS_00020404|organism=Clytia hemisphaerica|type=transcript|length=1423bp|location=Sequence derived from alignment at sc0000356:25257..26679+ (Clytia hemisphaerica)
AAAATTTCAATCTCAATAAATTTCAGTCCTCAATAAATCactgcaaatct
cagtgaattTCACATCTTCTAACAGGTCAAGGTTTGTCACATCTTTCTTT
TCACATCCTAAATTACCATCGATTTGATCACCACACCTCTCCACATCTTT
CAACAGTTTCACACTTTGCAACACCTCTCCTCAaaagttcattttcaaaa
ttaattcaaaatttcttaaCGTGCTATTACCACACTCATTCCTAAATTTT
AACGTCCTCAGAATAGATTCCAACGCTTATCAAGCAAGAAATGGTGAAAA
GCAGCCATCATGGCTCAACCGTCGATTCAGCCAAGAGTATAATGCCTTCC
AAGACATGGTCAACTGGCTAGGAAAGATGAGAAGGAGCTAAGGACGGATG
TTTCGTTGATTACACATCACATCCCTCTGTCAGCATGACGGAATTGCCCG
ACGATGAAACTTTTCTGAAAAACCATTAAATGATCCAGCATGGGTAAGTC
TCTTGAATTACAACCACTACAACTTGATTAGGCTCTAAACCGAAAGTGTT
TACTGATGTTTGCTTTATTCATTTTCGTTCCCTATTGTATACAAAAGGCC
TTATTGAACCAAGGGAACATTTTTCAAGAATAGCCCTGCATTgccaaaat
gaaattttgcaggtCATTTTACAAGATCTTAtctatatttgttttgttgc
tgATATCCGGATAAATACATGCAAGGACTTGAAATTCTGGCTTGTCGTGA
AAAAACAATTCTTAAAACCCAattccactggaaaatttggcaaaaatttg
tttcCTGGTgcgaaaataccctggaattttagcTCCACTGTAATCTAATC
ATCTAAAGATTACACtccaaagttttttcaactttggaacaaccaaattt
ctatccccattgggatttcaatggGGATTTTTATCTcgactaaagaaaaa
agttccaccggggctgcgagacaggggtgttcttaattaattgttttttt
tatatagctTTTTCAGGTGACGTCCTAGAAGTGAGGCCATTGTGGTGGCA
ATACAAAAAACACGTCTAAATTGACACCAATACCAAAAACTTCGGATTCG
AACAATTGAAGTTAACCTGATGCGACTTCCACATTCCAACAAAATTAGAA
GTAGGTAAATGACGTGGCTAGTTCTGGGAAATAATATATTTAGATGTTAA
AAATATCATCTGGACTCCCTCTGGACTAATAGAATCTCTTTGTGGCAAAA
ACACTCTCCTTGTCACCCATTAAGCGCTGGTGACCCCCTGAAAAGGCACG
ACAAGGAAACATAGTTTTAAATTCTGCTtcacttttttcgggacacaatg
tttttttacttttgaatgaTATCATTTAAGGTTATCACTCGGCATCTAGA
ATTTAACCATGCGTCAAATGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011464XLOC_011464Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020404-exon-sc0000356-1491911889:25257..25749TCONS_00020404-exon-sc0000356-1491911889:25257..25749Clytia hemisphaericaexon
TCONS_00020404-exon-sc0000356-1510915933:25257..25749TCONS_00020404-exon-sc0000356-1510915933:25257..25749Clytia hemisphaericaexon
TCONS_00020404-exon-sc0000356-1575043694:25257..25749TCONS_00020404-exon-sc0000356-1575043694:25257..25749Clytia hemisphaericaexon
TCONS_00020404-exon-sc0000356-1491911889:26264..26406TCONS_00020404-exon-sc0000356-1491911889:26264..26406Clytia hemisphaericaexon
TCONS_00020404-exon-sc0000356-1510915933:26264..26406TCONS_00020404-exon-sc0000356-1510915933:26264..26406Clytia hemisphaericaexon
TCONS_00020404-exon-sc0000356-1575043694:26264..26406TCONS_00020404-exon-sc0000356-1575043694:26264..26406Clytia hemisphaericaexon
TCONS_00020404-exon-sc0000356-1491911889:26637..26679TCONS_00020404-exon-sc0000356-1491911889:26637..26679Clytia hemisphaericaexon
TCONS_00020404-exon-sc0000356-1510915933:26637..26679TCONS_00020404-exon-sc0000356-1510915933:26637..26679Clytia hemisphaericaexon
TCONS_00020404-exon-sc0000356-1575043694:26637..26679TCONS_00020404-exon-sc0000356-1575043694:26637..26679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:25257..26679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.11885	0.108097	0.792278	0.448063	0.198641	0.855134	0	0.22563	0	0	0	0	0	0.155991	0	0.438026	0.0664047	1.51746e-08	0	0.220468	0.0590922	0.0802401	0	0.813051	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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