TCONS_00020395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020395
Unique NameTCONS_00020395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020395 ID=TCONS_00020395|Name=TCONS_00020395|organism=Clytia hemisphaerica|type=transcript|length=792bp
GTCAacactgatttttgtcctgaaGCACGTCAACAGGCATGCACAAAATT
TTCATACGTGACAACCAGTGAATCTGGAAGgaaaaaatctaatacaatAA
TTGAACATTTGAAGTTAAAGAAAGATGGTTTTGACATTTTATACACTTTT
GttgtaacaaaaatattttcgttgATTTTGAAGTGGAAAAATGAAATCGT
CATTAAAGTACCAAAGGTCGATTACAATCTGGTCAAGATATCTGTTGAGT
AAGATAAGGTATTACGGTATGTTTCTGGATTTATaccttttttccttaaa
aaagagATTTTCCAGACTGAAGGAATCGATGCTTAGGAGTGCAGTTCTTC
AACTAATAAATACATGGTGCGTAGAAGGTGAGGTTGAGGACGCAACTGAC
TTCTACGATTACACACTTTCTTGGACAAATCGTTTAAACAGGGGTGGATT
GATGATTGTTAAAGagactttttttgttttcattagaAGAATTGAAATGA
CTGTACGTGGAGTACTGAATCAAACTTTGATTCAGACGTACAATGGAGAG
GATTTGAGAGACATTATTCTGGAGAAACTGatgaaaagtttattgattGA
AAGCTCTTGGGCCTCATTAAGCAGAATGTTGTTATCTGAAAAGCTCAAAG
TGACACTGAAGCAGATTGTTTTAAAGAAATGGGTGAATTTACGCATACGG
TCGTTTGTGACAGCTTGGATACAGGcatcaaaaatgaaacaaaatgataa
aaaactttctaaaaaagCTGAGGTCTCTTTGCGAAAGGGTCT
Run BLAST on NCBI

protein sequence of TCONS_00020395-protein

>TCONS_00020395-protein ID=TCONS_00020395-protein|Name=TCONS_00020395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MKSSLKYQRSITIWSRYLLSKIRYYGMFLDLYLFSLKKRFSRLKESMLRS
AVLQLINTWCVEGEVEDATDFYDYTLSWTNRLNRGGLMIVKETFFVFIRR
IEMTVRGVLNQTLIQTYNGEDLRDIILEKLMKSLLIESSWASLSRMLLSE
KLKVTLKQIVLKKWVNLRIRSFVTAWIQASKMKQNDKKLSKKAEVSLRKG
Run BLAST on NCBI

transcript from alignment at sc0000355:90931..91722

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020395 ID=TCONS_00020395|Name=TCONS_00020395|organism=Clytia hemisphaerica|type=transcript|length=792bp|location=Sequence derived from alignment at sc0000355:90931..91722 (Clytia hemisphaerica)
AGACCCTTTCGCAAAGAGACCTCAGcttttttagaaagttttttatcatt
ttgtttcatttttgatgCCTGTATCCAAGCTGTCACAAACGACCGTATGC
GTAAATTCACCCATTTCTTTAAAACAATCTGCTTCAGTGTCACTTTGAGC
TTTTCAGATAACAACATTCTGCTTAATGAGGCCCAAGAGCTTTCaatcaa
taaacttttcatCAGTTTCTCCAGAATAATGTCTCTCAAATCCTCTCCAT
TGTACGTCTGAATCAAAGTTTGATTCAGTACTCCACGTACAGTCATTTCA
ATTCTtctaatgaaaacaaaaaaagtctCTTTAACAATCATCAATCCACC
CCTGTTTAAACGATTTGTCCAAGAAAGTGTGTAATCGTAGAAGTCAGTTG
CGTCCTCAACCTCACCTTCTACGCACCATGTATTTATTAGTTGAAGAACT
GCACTCCTAAGCATCGATTCCTTCAGTCTGGAAAATctcttttttaagga
aaaaaggtATAAATCCAGAAACATACCGTAATACCTTATCTTACTCAACA
GATATCTTGACCAGATTGTAATCGACCTTTGGTACTTTAATGACGATTTC
ATTTTTCCACTTCAAAATcaacgaaaatatttttgttacaaCAAAAGTGT
ATAAAATGTCAAAACCATCTTTCTTTAACTTCAAATGTTCAATTattgta
ttagattttttcCTTCCAGATTCACTGGTTGTCACGTATGAAAATTTTGT
GCATGCCTGTTGACGTGCttcaggacaaaaatcagtgtTGAC

Coding sequence (CDS) from alignment at sc0000355:90931..91722

>TCONS_00020395 ID=TCONS_00020395|Name=TCONS_00020395|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000355:90931..91722 (Clytia hemisphaerica)
ACCCTTTCGCAAAGAGACCTCAGcttttttagaaagttttttatcatttt
gtttcatttttgatgCCTGTATCCAAGCTGTCACAAACGACCGTATGCGT
AAATTCACCCATTTCTTTAAAACAATCTGCTTCAGTGTCACTTTGAGCTT
TTCAGATAACAACATTCTGCTTAATGAGGCCCAAGAGCTTTCaatcaata
aacttttcatCAGTTTCTCCAGAATAATGTCTCTCAAATCCTCTCCATTG
TACGTCTGAATCAAAGTTTGATTCAGTACTCCACGTACAGTCATTTCAAT
TCTtctaatgaaaacaaaaaaagtctCTTTAACAATCATCAATCCACCCC
TGTTTAAACGATTTGTCCAAGAAAGTGTGTAATCGTAGAAGTCAGTTGCG
TCCTCAACCTCACCTTCTACGCACCATGTATTTATTAGTTGAAGAACTGC
ACTCCTAAGCATCGATTCCTTCAGTCTGGAAAATctcttttttaaggaaa
aaaggtATAAATCCAGAAACATACCGTAATACCTTATCTTACTCAACAGA
TATCTTGACCAGATTGTAATCGACCTTTGGTACTTTAATGACGATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011456XLOC_011456Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020395-proteinTCONS_00020395-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020395-exon-sc0000355-1491911889:90931..91722TCONS_00020395-exon-sc0000355-1491911889:90931..91722Clytia hemisphaericaexon
TCONS_00020395-exon-sc0000355-1510915933:90931..91722TCONS_00020395-exon-sc0000355-1510915933:90931..91722Clytia hemisphaericaexon
TCONS_00020395-exon-sc0000355-1575043694:90931..91722TCONS_00020395-exon-sc0000355-1575043694:90931..91722Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000355supercontigsc0000355:90931..91722 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.121708	0.059342	0	0	0.0820647	0.432309	0.439635	1.09867	0.769164	0.317595	0.246612	0.637721	0.323775	0.354059	0.0691096	0.35312	0.137048	0.28094	0.0646889	0.203077	0.411858	0.379171	0.0697737	0.190303	0	0.0971291	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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