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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020395 ID=TCONS_00020395|Name=TCONS_00020395|organism=Clytia hemisphaerica|type=transcript|length=792bp
GTCAacactgatttttgtcctgaaGCACGTCAACAGGCATGCACAAAATT
TTCATACGTGACAACCAGTGAATCTGGAAGgaaaaaatctaatacaatAA
TTGAACATTTGAAGTTAAAGAAAGATGGTTTTGACATTTTATACACTTTT
GttgtaacaaaaatattttcgttgATTTTGAAGTGGAAAAATGAAATCGT
CATTAAAGTACCAAAGGTCGATTACAATCTGGTCAAGATATCTGTTGAGT
AAGATAAGGTATTACGGTATGTTTCTGGATTTATaccttttttccttaaa
aaagagATTTTCCAGACTGAAGGAATCGATGCTTAGGAGTGCAGTTCTTC
AACTAATAAATACATGGTGCGTAGAAGGTGAGGTTGAGGACGCAACTGAC
TTCTACGATTACACACTTTCTTGGACAAATCGTTTAAACAGGGGTGGATT
GATGATTGTTAAAGagactttttttgttttcattagaAGAATTGAAATGA
CTGTACGTGGAGTACTGAATCAAACTTTGATTCAGACGTACAATGGAGAG
GATTTGAGAGACATTATTCTGGAGAAACTGatgaaaagtttattgattGA
AAGCTCTTGGGCCTCATTAAGCAGAATGTTGTTATCTGAAAAGCTCAAAG
TGACACTGAAGCAGATTGTTTTAAAGAAATGGGTGAATTTACGCATACGG
TCGTTTGTGACAGCTTGGATACAGGcatcaaaaatgaaacaaaatgataa
aaaactttctaaaaaagCTGAGGTCTCTTTGCGAAAGGGTCT Run BLAST on NCBI protein sequence of TCONS_00020395-protein >TCONS_00020395-protein ID=TCONS_00020395-protein|Name=TCONS_00020395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MKSSLKYQRSITIWSRYLLSKIRYYGMFLDLYLFSLKKRFSRLKESMLRS
AVLQLINTWCVEGEVEDATDFYDYTLSWTNRLNRGGLMIVKETFFVFIRR
IEMTVRGVLNQTLIQTYNGEDLRDIILEKLMKSLLIESSWASLSRMLLSE
KLKVTLKQIVLKKWVNLRIRSFVTAWIQASKMKQNDKKLSKKAEVSLRKG Run BLAST on NCBI transcript from alignment at sc0000355:90931..91722 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020395 ID=TCONS_00020395|Name=TCONS_00020395|organism=Clytia hemisphaerica|type=transcript|length=792bp|location=Sequence derived from alignment at sc0000355:90931..91722 (Clytia hemisphaerica)
AGACCCTTTCGCAAAGAGACCTCAGcttttttagaaagttttttatcatt
ttgtttcatttttgatgCCTGTATCCAAGCTGTCACAAACGACCGTATGC
GTAAATTCACCCATTTCTTTAAAACAATCTGCTTCAGTGTCACTTTGAGC
TTTTCAGATAACAACATTCTGCTTAATGAGGCCCAAGAGCTTTCaatcaa
taaacttttcatCAGTTTCTCCAGAATAATGTCTCTCAAATCCTCTCCAT
TGTACGTCTGAATCAAAGTTTGATTCAGTACTCCACGTACAGTCATTTCA
ATTCTtctaatgaaaacaaaaaaagtctCTTTAACAATCATCAATCCACC
CCTGTTTAAACGATTTGTCCAAGAAAGTGTGTAATCGTAGAAGTCAGTTG
CGTCCTCAACCTCACCTTCTACGCACCATGTATTTATTAGTTGAAGAACT
GCACTCCTAAGCATCGATTCCTTCAGTCTGGAAAATctcttttttaagga
aaaaaggtATAAATCCAGAAACATACCGTAATACCTTATCTTACTCAACA
GATATCTTGACCAGATTGTAATCGACCTTTGGTACTTTAATGACGATTTC
ATTTTTCCACTTCAAAATcaacgaaaatatttttgttacaaCAAAAGTGT
ATAAAATGTCAAAACCATCTTTCTTTAACTTCAAATGTTCAATTattgta
ttagattttttcCTTCCAGATTCACTGGTTGTCACGTATGAAAATTTTGT
GCATGCCTGTTGACGTGCttcaggacaaaaatcagtgtTGAC Coding sequence (CDS) from alignment at sc0000355:90931..91722 >TCONS_00020395 ID=TCONS_00020395|Name=TCONS_00020395|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000355:90931..91722 (Clytia hemisphaerica)
ACCCTTTCGCAAAGAGACCTCAGcttttttagaaagttttttatcatttt
gtttcatttttgatgCCTGTATCCAAGCTGTCACAAACGACCGTATGCGT
AAATTCACCCATTTCTTTAAAACAATCTGCTTCAGTGTCACTTTGAGCTT
TTCAGATAACAACATTCTGCTTAATGAGGCCCAAGAGCTTTCaatcaata
aacttttcatCAGTTTCTCCAGAATAATGTCTCTCAAATCCTCTCCATTG
TACGTCTGAATCAAAGTTTGATTCAGTACTCCACGTACAGTCATTTCAAT
TCTtctaatgaaaacaaaaaaagtctCTTTAACAATCATCAATCCACCCC
TGTTTAAACGATTTGTCCAAGAAAGTGTGTAATCGTAGAAGTCAGTTGCG
TCCTCAACCTCACCTTCTACGCACCATGTATTTATTAGTTGAAGAACTGC
ACTCCTAAGCATCGATTCCTTCAGTCTGGAAAATctcttttttaaggaaa
aaaggtATAAATCCAGAAACATACCGTAATACCTTATCTTACTCAACAGA
TATCTTGACCAGATTGTAATCGACCTTTGGTACTTTAATGACGATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020395-exon-sc0000355-1491911889:90931..91722 | TCONS_00020395-exon-sc0000355-1491911889:90931..91722 | Clytia hemisphaerica | exon |
| TCONS_00020395-exon-sc0000355-1510915933:90931..91722 | TCONS_00020395-exon-sc0000355-1510915933:90931..91722 | Clytia hemisphaerica | exon |
| TCONS_00020395-exon-sc0000355-1575043694:90931..91722 | TCONS_00020395-exon-sc0000355-1575043694:90931..91722 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000355 | supercontig | sc0000355:90931..91722 . |
Blast
The following BLAST results are available for this feature:
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