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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020390 ID=TCONS_00020390|Name=TCONS_00020390|organism=Clytia hemisphaerica|type=transcript|length=2176bp
CTCCTTTGTCGAGCAATAATCTTTCATTTCTTTATCTATCTTGGGAGAGG
CACAAGAATGAGGATATTTGATGATAATAGCCTGGCTTTTCTGGCCATCT
CTTCCAGCTCTTCCAGACTGTTGGAAATAGTCATCCAGACTGCATGGAGG
TCCATAGTGGATGACTGAGTGTAAACCTTTACAGTCTACACCCATGCCAA
ACGCTACAGAGGCTACTAAAAATCTGACCTTTCCATCAGCGGCTGAAAAG
GAATTAAGGACCCAATCAAGAACATCTGGATCTGTTTCTGCTGTATACTT
AGCGTAAGGCctagttttgaagtttttatatttatctttCATTGCATCGT
TAAAGGCATCAAAAATCAATGTACTTTGGTCAACTCTTCTAGCAAACACA
AGAACCTTCTTTGATTCGTAACCATTTAACATCATATCATTAACATAATT
TTTGAATATTAAGCTTGGATCCTTGATCTCAGATTTTAATACAAAATATC
TAATGTTGTCtttgtttggtatttttctAATGATCTTTGGTGAATTCAAG
CCTAGACTATTTATAACAGCTTTAGTCAATTTAGTTGTTGCTGTAGCTGT
TAAGGCAGCCATTGGGACAGGATGGGTCAACAGGGACCTCATTTGACTAA
GCTGACCATAGCTTGCACGAAATGCCTCACCATCCTCACTGTCTGAGCCC
CtaaaaaaaccaaaatattatTTCTGAACAAAGTAACTGAAtgcaaaaat
agcaaaacaatACTTCAAACTGATGAAAATCTGTTCACACCCTCGActag
aaaacaaaggaaccatAATGACAACTGTTGAAGTGTATTTCTACAAGAAT
ATgcgaaaaaaagtttattttagaaatattctGCAAATCTTAACTATAAT
AATTACCATTTTTCAACAATATGACTCTCATCGACAACAATTGATATAAG
TTTTGTGCTGAATGCAGACTGTTTCAAAATTGTACGGTAACGTTCCAAGA
TTGCTTCAGGAGAGGAAAACAAAATTTGGAAGCAGCCAGAAAGGACTTGC
TGAATGGTTAAAAGAATAAGAAGTTAGAAAAAAAGTGAATGACTTTATGT
ATATGTTTTATTCAGGAATTTTTGAAAAAATGATATCATTCATTTTCCAT
CTGTTTCCATATATATAATATACAAATTTTGGGCTGAAAAATATTTTTCA
AAGATACAATGAAAATGCTTATTAAGCTCCCCCTTTTAAAAGTTTTAAAT
TTTAAAAGCTAATTGAATATTTATTTTATAGACAGAACCTACAACTACTG
TACCGTAGCTTTGTGCAATGTCAACATATCGTTCTTTCATAGCAACTATA
TCTGATCTTTAAATGTTTATATATAAAACCTTCTGAATAAGCTGTTTAAA
AAATCACTATACTATTATCGTAACTGCTTTGGCCGAGATCACAAATAACT
TGTGTTCGCGTCGTCCAACCGACTCACTTTTGATCTGAAAAATCTGATTG
TTTTTAGTCGGAAAGTCGGGGAATCTGTCGAATTTTTAGGCGATATTTTC
CAAAGAAAATTTGCAGATTTAGTGCTAGTTAGTTTTTAATCATCAAGCGT
TTAAAACAATTTCTACTCACAATTTTTCAGAGATTTTTTGCGTTTGAGAG
TGCTACATAACTGATTTTGCCCATTGAGTTTAAAGCCTGAAGGGCTAGAG
TTCAATCTCTTACCTTTCTCAGGCAAGAAAAAGTGAAGCCTTAAAAAAAG
CGCCGCATTTTTGACGACAGATTGAATCTATCGTTTACGATTGATATTTT
TTACAAAATTTAGCGGTAAATTTTAGTTTCAATCTGTCATTGTGGAAAAA
CCAGGCCACTCGCTCAAGGCCGCGcaattttggtaggatttgttggcttc
aaatcctaccaaggagattgacttctagccctttgggcttatacttcatt
gatttTGCCGCTTCACATGTAACAATAAACATACTGCAGACCGGGCGCTA
GATGATTCTTGCAGCCTGAACAAGCCTAAGGCCAGAATGTATTTTTCCAA
CATTTTTATTgcctaccgaccgaccgacccatattttagAGCCAAAAATG
AtgcgaacacaagttatttgtgatctcGGCCTTTGCAGACCATCAGATAG
TTGCTATGGCAGGCATGcagaattag Run BLAST on NCBI protein sequence of TCONS_00020390-protein >TCONS_00020390-protein ID=TCONS_00020390-protein|Name=TCONS_00020390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MRSLLTHPVPMAALTATATTKLTKAVINSLGLNSPKIIRKIPNKDNIRYF
VLKSEIKDPSLIFKNYVNDMMLNGYESKKVLVFARRVDQSTLIFDAFNDA
MKDKYKNFKTRPYAKYTAETDPDVLDWVLNSFSAADGKVRFLVASVAFGM
GVDCKGLHSVIHYGPPCSLDDYFQQSGRAGRDGQKSQAIIIKYPHSCASP
KIDKEMKDYCSTKE Run BLAST on NCBI transcript from alignment at sc0000355:21302..23477 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020390 ID=TCONS_00020390|Name=TCONS_00020390|organism=Clytia hemisphaerica|type=transcript|length=2176bp|location=Sequence derived from alignment at sc0000355:21302..23477 (Clytia hemisphaerica)
ctaattctgCATGCCTGCCATAGCAACTATCTGATGGTCTGCAAAGGCCg
agatcacaaataacttgtgttcgcaTCATTTTTGGCTctaaaatatgggt
cggtcggtcggtaggcAATAAAAATGTTGGAAAAATACATTCTGGCCTTA
GGCTTGTTCAGGCTGCAAGAATCATCTAGCGCCCGGTCTGCAGTATGTTT
ATTGTTACATGTGAAGCGGCAaaatcaatgaagtataagcccaaagggct
agaagtcaatctccttggtaggatttgaagccaacaaatcctaccaaaat
tgCGCGGCCTTGAGCGAGTGGCCTGGTTTTTCCACAATGACAGATTGAAA
CTAAAATTTACCGCTAAATTTTGTAAAAAATATCAATCGTAAACGATAGA
TTCAATCTGTCGTCAAAAATGCGGCGCTTTTTTTAAGGCTTCACTTTTTC
TTGCCTGAGAAAGGTAAGAGATTGAACTCTAGCCCTTCAGGCTTTAAACT
CAATGGGCAAAATCAGTTATGTAGCACTCTCAAACGCAAAAAATCTCTGA
AAAATTGTGAGTAGAAATTGTTTTAAACGCTTGATGATTAAAAACTAACT
AGCACTAAATCTGCAAATTTTCTTTGGAAAATATCGCCTAAAAATTCGAC
AGATTCCCCGACTTTCCGACTAAAAACAATCAGATTTTTCAGATCAAAAG
TGAGTCGGTTGGACGACGCGAACACAAGTTATTTGTGATCTCGGCCAAAG
CAGTTACGATAATAGTATAGTGATTTTTTAAACAGCTTATTCAGAAGGTT
TTATATATAAACATTTAAAGATCAGATATAGTTGCTATGAAAGAACGATA
TGTTGACATTGCACAAAGCTACGGTACAGTAGTTGTAGGTTCTGTCTATA
AAATAAATATTCAATTAGCTTTTAAAATTTAAAACTTTTAAAAGGGGGAG
CTTAATAAGCATTTTCATTGTATCTTTGAAAAATATTTTTCAGCCCAAAA
TTTGTATATTATATATATGGAAACAGATGGAAAATGAATGATATCATTTT
TTCAAAAATTCCTGAATAAAACATATACATAAAGTCATTCACTTTTTTTC
TAACTTCTTATTCTTTTAACCATTCAGCAAGTCCTTTCTGGCTGCTTCCA
AATTTTGTTTTCCTCTCCTGAAGCAATCTTGGAACGTTACCGTACAATTT
TGAAACAGTCTGCATTCAGCACAAAACTTATATCAATTGTTGTCGATGAG
AGTCATATTGTTGAAAAATGGTAATTATTATAGTTAAGATTTGCagaata
tttctaaaataaactttttttcgcATATTCTTGTAGAAATACACTTCAAC
AGTTGTCATTatggttcctttgttttctagTCGAGGGTGTGAACAGATTT
TCATCAGTTTGAAGTattgttttgctatttttgcaTTCAGTTACTTTGTT
CAGAAataatattttggtttttttaGGGGCTCAGACAGTGAGGATGGTGA
GGCATTTCGTGCAAGCTATGGTCAGCTTAGTCAAATGAGGTCCCTGTTGA
CCCATCCTGTCCCAATGGCTGCCTTAACAGCTACAGCAACAACTAAATTG
ACTAAAGCTGTTATAAATAGTCTAGGCTTGAATTCACCAAAGATCATTag
aaaaataccaaacaaaGACAACATTAGATATTTTGTATTAAAATCTGAGA
TCAAGGATCCAAGCTTAATATTCAAAAATTATGTTAATGATATGATGTTA
AATGGTTACGAATCAAAGAAGGTTCTTGTGTTTGCTAGAAGAGTTGACCA
AAGTACATTGATTTTTGATGCCTTTAACGATGCAATGaaagataaatata
aaaacttcaaaactagGCCTTACGCTAAGTATACAGCAGAAACAGATCCA
GATGTTCTTGATTGGGTCCTTAATTCCTTTTCAGCCGCTGATGGAAAGGT
CAGATTTTTAGTAGCCTCTGTAGCGTTTGGCATGGGTGTAGACTGTAAAG
GTTTACACTCAGTCATCCACTATGGACCTCCATGCAGTCTGGATGACTAT
TTCCAACAGTCTGGAAGAGCTGGAAGAGATGGCCAGAAAAGCCAGGCTAT
TATCATCAAATATCCTCATTCTTGTGCCTCTCCCAAGATAGATAAAGAAA
TGAAAGATTATTGCTCGACAAAGGAG Coding sequence (CDS) from alignment at sc0000355:21302..23477 >TCONS_00020390 ID=TCONS_00020390|Name=TCONS_00020390|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0000355:21302..23477 (Clytia hemisphaerica)
ATGAGGTCCCTGTTGACCCATCCTGTCCCAATGGCTGCCTTAACAGCTAC
AGCAACAACTAAATTGACTAAAGCTGTTATAAATAGTCTAGGCTTGAATT
CACCAAAGATCATTagaaaaataccaaacaaaGACAACATTAGATATTTT
GTATTAAAATCTGAGATCAAGGATCCAAGCTTAATATTCAAAAATTATGT
TAATGATATGATGTTAAATGGTTACGAATCAAAGAAGGTTCTTGTGTTTG
CTAGAAGAGTTGACCAAAGTACATTGATTTTTGATGCCTTTAACGATGCA
ATGaaagataaatataaaaacttcaaaactagGCCTTACGCTAAGTATAC
AGCAGAAACAGATCCAGATGTTCTTGATTGGGTCCTTAATTCCTTTTCAG
CCGCTGATGGAAAGGTCAGATTTTTAGTAGCCTCTGTAGCGTTTGGCATG
GGTGTAGACTGTAAAGGTTTACACTCAGTCATCCACTATGGACCTCCATG
CAGTCTGGATGACTATTTCCAACAGTCTGGAAGAGCTGGAAGAGATGGCC
AGAAAAGCCAGGCTATTATCATCAAATATCCTCATTCTTGTGCCTCTCCC
AAGATAGATAAAGAAATGAAAGATTATTGCTCGACAAAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020390-exon-sc0000355-1491911889:21302..23477 | TCONS_00020390-exon-sc0000355-1491911889:21302..23477 | Clytia hemisphaerica | exon |
| TCONS_00020390-exon-sc0000355-1510915933:21302..23477 | TCONS_00020390-exon-sc0000355-1510915933:21302..23477 | Clytia hemisphaerica | exon |
| TCONS_00020390-exon-sc0000355-1575043694:21302..23477 | TCONS_00020390-exon-sc0000355-1575043694:21302..23477 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000355 | supercontig | sc0000355:21302..23477 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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