TCONS_00020390-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020390-protein
Unique NameTCONS_00020390-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length214

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020390-protein ID=TCONS_00020390-protein|Name=TCONS_00020390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MRSLLTHPVPMAALTATATTKLTKAVINSLGLNSPKIIRKIPNKDNIRYF
VLKSEIKDPSLIFKNYVNDMMLNGYESKKVLVFARRVDQSTLIFDAFNDA
MKDKYKNFKTRPYAKYTAETDPDVLDWVLNSFSAADGKVRFLVASVAFGM
GVDCKGLHSVIHYGPPCSLDDYFQQSGRAGRDGQKSQAIIIKYPHSCASP
KIDKEMKDYCSTKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011451XLOC_011451Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020390TCONS_00020390Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 99..183
e-value: 5.5E-14
score: 62.5
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 76..182
e-value: 7.7E-14
score: 51.9
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 66..214
score: 13.616
NoneNo IPR availableGENE3D3.40.50.300coord: 44..209
e-value: 3.1E-23
score: 81.7
NoneNo IPR availableCDDcd00079HELICccoord: 46..191
e-value: 9.62765E-20
score: 80.7448
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..195

Blast
[Close]
BLAST of TCONS_00020390-protein vs. Swiss-Prot (Human)
Match: BLM (Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.452e-17
Identity = 54/187 (28.88%), Postives = 91/187 (48.66%), Query Frame = 0 
Query:    9 VPMAALTATATTKLTKAVINSLGLNSPKIIRKIPNKDNIRYFVLKSEIKDPSLIFKNYVNDMMLNGYESKKVLVFARRVDQSTLIFDAFNDAMKDKYKNFKTRPYAKYTAETDPDVLDWVLNSFSAADGKVRFLVASVAFGMGVDCKGLHSVIHYGPPCSLDDYFQQSGRAGRDGQKSQAIIIKYPH 195
            VP+ ALTATA  ++ K ++  L +  P++     N+ N++Y+VL  + K  +     ++     + Y+S  +   +RR            D M D  +       A +   +D    D V   +   DG  + + A++AFGMG+D   +  VIH   P S++ Y+Q+SGRAGRDG+ S  ++    H
Sbjct:  824 VPVMALTATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKH--HPYDSGIIYCLSRRE----------CDTMADTLQRDGLAALAYHAGLSD-SARDEVQQKWINQDG-CQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYH 996
The following BLAST results are available for this feature:
BLAST of TCONS_00020390-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BLM8.452e-1728.88Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1... [more]
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