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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020352 ID=TCONS_00020352|Name=TCONS_00020352|organism=Clytia hemisphaerica|type=transcript|length=2180bpRun BLAST on NCBI protein sequence of TCONS_00020352-protein >TCONS_00020352-protein ID=TCONS_00020352-protein|Name=TCONS_00020352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp MVSTMNSAVLLMVIMLCFEIVHSDQVCYPPYGCFSDDAPYDEALVQLPWGRun BLAST on NCBI transcript from alignment at sc0000354:224652..233888- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020352 ID=TCONS_00020352|Name=TCONS_00020352|organism=Clytia hemisphaerica|type=transcript|length=9237bp|location=Sequence derived from alignment at sc0000354:224652..233888- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000354:224652..233888- >TCONS_00020352 ID=TCONS_00020352|Name=TCONS_00020352|organism=Clytia hemisphaerica|type=CDS|length=12528bp|location=Sequence derived from alignment at sc0000354:224652..233888- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020352 vs. Swiss-Prot (Human)
Match: LIPP (Pancreatic triacylglycerol lipase OS=Homo sapiens GN=PNLIP PE=1 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 9.418e-74 Identity = 154/429 (35.90%), Postives = 221/429 (51.52%), Query Frame = 3
Query: 177 VHSDQVCYPPYGCFSDDAPY----DEALVQLPWGPKDLETKFWFYTRKDLSKPTGEIKEFDAQGASKVG--FDPHKTTVFLTHGYIENSRRWWVKMFINELLNYENMNLIFVEWHVGSAFPYHQAVGNTRMVGAQVAHMIELIKNDTGINWDKLRLIGFSLGAHVMGYAGRNLRRKGMLLRRISALDPASPYFENKHPDRRIDPTDAEFVDVIHTDAKTLVVN-GFGTTQEVGHIDFFPNGGFDQVGCGNLDVSVV-----------QYLACSHYRVLRYYMESINSPCPYYGYPCQSYEDFKNGHCTHCPDGGCPRMGYHVAR-PKK--DLKMKYYTLTNENYPFCAYHYSIEFYTGQGFLNDLDGTVTVELTGSK------QTVSVTLKGKYYRAGGVVRDIFALQQDIGDLKKIRISHDRILDIWY 1382
V +VCY GCFSDD+P+ + L LPW PKD+ T+F YT ++ + +E A +S G F ++ T F+ HG+I+ W+ L E++N I V+W GS Y QA N R+VGA+VA+ +E +++ G + + +IG SLGAH G AG RR + RI+ LDPA P F+ R+DP+DA+FVDVIHTD +V N GFG +Q VGH+DFFPNGG + GC +S + + AC+H R +YY +SI +P + G+PC SY F C CP GGCP+MG++ R P K D+ K+Y T + F + Y + + G + V L G+K + TLK + D+ D+GDL+ ++ IWY
Sbjct: 14 VAGKEVCYERLGCFSDDSPWSGITERPLHILPWSPKDVNTRFLLYTNENPNN----FQEVAADSSSISGSNFKTNRKTRFIIHGFIDKGEENWLANVCKNLFKVESVNCICVDWKGGSRTGYTQASQNIRIVGAEVAYFVEFLQSAFGYSPSNVHVIGHSLGAHAAGEAG---RRTNGTIGRITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDFFPNGGVEMPGCKKNILSQIVDIDGIWEGTRDFAACNHLRSYKYYTDSIVNPDGFAGFPCASYNVFTANKCFPCPSGGCPQMGHYADRYPGKTNDVGQKFYLDTGDASNFARWRYKVSVTLSG---KKVTGHILVSLFGNKGNSKQYEIFKGTLKPDSTHSNEFDSDV-----DVGDLQMVKF-------IWY 420 The following BLAST results are available for this feature:
BLAST of TCONS_00020352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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