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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020346 ID=TCONS_00020346|Name=TCONS_00020346|organism=Clytia hemisphaerica|type=transcript|length=296bp
ACCCTATTCATCCCTTGTTACTACTGGAAGCGCCAGACGATATTTTGTGT
TTCAAATTCAATCCATCAGATCCAAATATCGTTTGCGCTGGATGCTTCAA
TGGACAGATTGTGCTGTGGGACATCAAAAATTACAATGATTTATTGGTCA
ACCATAAAACACACGGACAAGGAAGTAACCCCAACCAAAATATGTCCAAC
CTGCCATCTTTCTACAATACGAATACAACGGAATTATCACCGAAAGTTCG
TTATTGCGCAGTTTCAAGTATCGAAAATTCACATCGTATGCCCATC Run BLAST on NCBI transcript from alignment at sc0000354:210512..212209+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020346 ID=TCONS_00020346|Name=TCONS_00020346|organism=Clytia hemisphaerica|type=transcript|length=1698bp|location=Sequence derived from alignment at sc0000354:210512..212209+ (Clytia hemisphaerica)
ACCCTATTCATCCCTTGGTAAGCAGTTGTaatagttcttccgtctcagcg
AAGTATATAAGGGTTTTCCGTCTTAAAAATTCTGAATAAAATCTCCAAAT
TTCTTACCGCCCTTATACTTCGTATCACTTGACTAAGAAGCGCCGAACga
acaaaaataaattcatgGATTGAGAAGTACCAGGGTTCAGATAAAGCTCA
GTCtcaaaaattctgcataattcaccaacATTTCAAGGAACATGTGCtta
tttgctgtgtaaaatcctTTTTCGTCTCAGAAAAGAAACCTTTCGCCGCT
GGGTAAGATCTGATATATTgactgattaattttgagacTGAACCGTTTCG
TCTTTTGAGGGCTTCAGATGTTaatcaaattttataaatttaatAATCTG
CAATAGACTGTAACACACCGAGTAATAGCCTGGAATAAATACTATACTCT
TACtgagtagcttctgatgggatttttgcttatgtggtgtaagtttgaat
agagagtatggatgTCCAGTAGACTAATCGAGTAGTGGCACTGCTCTGAA
AACTCAAATCCAGGGTTTATATATAAAGCTTAGTGATCTTGACATATAct
tttccttttgttttcaGTTACTACTGGAAGCGCCAGACGATATTTTGTGT
TTCAAATTCAATCCATCAGATCCAAATATCGTTTGCGCTGGATGCTTCAA
TGGACAGGTCGGTTAAGCGCGTTGCTTTTCTCGTTTTTGAATGATTtgct
cattttttttttctttacaaataATCCGGTGGTGAAAtgacctttttttc
tttcaacctTTTCAAACAGCAccaaaaaggttttttattttattttttca
taatatGGCCTAATGAGCCCTTGGAAAGTCCTTAGTTCCTTATTGACAGA
CACAGATTGCACCATCTAACAGAGTTTGAAGAATAGATCTCCAAAATGTG
TGTTTGTCTTATTTGGTCGACTAAGCTCCCTAAATATTGACTTCAAGAAT
GCTGCATCagcaatttttagaaattttgcttAAAAGAACTTTCACAATCA
GAAGACAGTGAACCTTCCAAAATGAACATTCTTAAGCTAAGGTAAAGCCC
TTAAGCTTCTAGTAGGGTTAAATGGAAaggcttttttttttgctaacaTT
TCATTGATATTTCTACAGATTGTGCTGTGGGACATCAAAAATTACAATGA
TTTATTGGTCAACCATAAAACACACGGACAAGGAAGTAACCCCAACCAAA
ATATGTCCAACCTGGTAAGAGTCTTTCACTATCAAACGTGAATACATTTC
CATCTTCAATGTAATTAAATGatatcacaaaatatcatgtctccAAGACT
TTATAGTGTTTTATTCTTTCTAACGTATATctcatttcactgaagattgt
cGTGGTTGTGCCTTGAAGAAGAATTTTGTCAACGCTCAATATAATCACAA
AATGTACTTTCGAGATTTTGAACGAATCCTTTAAAGAATCCTCTTTGTAT
GCATCTGATGCTGCATATGTAAGCACTTTCCTAATGGGATATTTATTTTG
TTACAAAAAAATGATACTAATAAACTATTCCTTCTCATCCTTTCATACTC
TCCAGCCATCTTTCTACAATACGAATACAACGGAATTATCACCGAAAGTT
CGTTATTGCGCAGTTTCAAGTATCGAAAATTCACATCGTATGCCCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020346-exon-sc0000354-1491911889:210512..210528 | TCONS_00020346-exon-sc0000354-1491911889:210512..210528 | Clytia hemisphaerica | exon |
| TCONS_00020346-exon-sc0000354-1510915933:210512..210528 | TCONS_00020346-exon-sc0000354-1510915933:210512..210528 | Clytia hemisphaerica | exon |
| TCONS_00020346-exon-sc0000354-1575043694:210512..210528 | TCONS_00020346-exon-sc0000354-1575043694:210512..210528 | Clytia hemisphaerica | exon |
| TCONS_00020346-exon-sc0000354-1491911889:211129..211218 | TCONS_00020346-exon-sc0000354-1491911889:211129..211218 | Clytia hemisphaerica | exon |
| TCONS_00020346-exon-sc0000354-1510915933:211129..211218 | TCONS_00020346-exon-sc0000354-1510915933:211129..211218 | Clytia hemisphaerica | exon |
| TCONS_00020346-exon-sc0000354-1575043694:211129..211218 | TCONS_00020346-exon-sc0000354-1575043694:211129..211218 | Clytia hemisphaerica | exon |
| TCONS_00020346-exon-sc0000354-1491911889:211680..211775 | TCONS_00020346-exon-sc0000354-1491911889:211680..211775 | Clytia hemisphaerica | exon |
| TCONS_00020346-exon-sc0000354-1510915933:211680..211775 | TCONS_00020346-exon-sc0000354-1510915933:211680..211775 | Clytia hemisphaerica | exon |
| TCONS_00020346-exon-sc0000354-1575043694:211680..211775 | TCONS_00020346-exon-sc0000354-1575043694:211680..211775 | Clytia hemisphaerica | exon |
| TCONS_00020346-exon-sc0000354-1491911889:212117..212209 | TCONS_00020346-exon-sc0000354-1491911889:212117..212209 | Clytia hemisphaerica | exon |
| TCONS_00020346-exon-sc0000354-1510915933:212117..212209 | TCONS_00020346-exon-sc0000354-1510915933:212117..212209 | Clytia hemisphaerica | exon |
| TCONS_00020346-exon-sc0000354-1575043694:212117..212209 | TCONS_00020346-exon-sc0000354-1575043694:212117..212209 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000354 | supercontig | sc0000354:210512..212209 + |
Blast
BLAST of TCONS_00020346 vs. Swiss-Prot (Human)
Match: WDR63 (WD repeat-containing protein 63 OS=Homo sapiens GN=WDR63 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.371e-24 Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 3
Query: 3 PIHPLLLLEAPDDILCFKFNPSDPNIVCAGCFNGQIVLWDIKNYNDLLVNHKTHGQGSNPNQNMSNLPSF-YNTNTTELSPKVRYCAVSSIENSHRMPI 296
PIHP L+LE+PDDI CFKF PSDPNI+ GC NGQIV+WDI + D + N K G S + + P F + + + +R+CAVSSIEN H+ I
Sbjct: 387 PIHPQLMLESPDDIFCFKFCPSDPNIIAGGCINGQIVMWDITAHADRIENIKAGGSRS---KRATLKPMFLLEPESNKEAMYIRHCAVSSIENGHKKVI 482
The following BLAST results are available for this feature:
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