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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020336 ID=TCONS_00020336|Name=TCONS_00020336|organism=Clytia hemisphaerica|type=transcript|length=1405bpRun BLAST on NCBI protein sequence of TCONS_00020336-protein >TCONS_00020336-protein ID=TCONS_00020336-protein|Name=TCONS_00020336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp NFTSFKKKDEPKSLDNINSKFYVATEDGEVIYLDWKPTKDIDTGKIVSNRRun BLAST on NCBI transcript from alignment at sc0000354:35956..128259+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020336 ID=TCONS_00020336|Name=TCONS_00020336|organism=Clytia hemisphaerica|type=transcript|length=92304bp|location=Sequence derived from alignment at sc0000354:35956..128259+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000354:35956..128259+ >TCONS_00020336 ID=TCONS_00020336|Name=TCONS_00020336|organism=Clytia hemisphaerica|type=CDS|length=7236bp|location=Sequence derived from alignment at sc0000354:35956..128259+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020336 vs. Swiss-Prot (Human)
Match: WDR63 (WD repeat-containing protein 63 OS=Homo sapiens GN=WDR63 PE=2 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 4.115e-68 Identity = 113/255 (44.31%), Postives = 162/255 (63.53%), Query Frame = 1
Query: 34 KSLDNINSKFYVATEDGEVIYLDWKPTKDIDTGKIVSNRPEHSFDAHDSTINTLQKSPFNKTIFLTVGGWTFSIWKDGVTFGPLIQSYPHDCKLTSGMWSPSRPSVFFIGKADGNIDVWDLLDKSHEPFLTQNVSPVPIITVSPFQMSPKQQLLAAGDEVGTLHVMEVPWNLRYATTNELHAFEHYLDREASRLELLD---KTRGQNSLPTSIKV-DSKAGHVQETEEEWDTRSKAQYAEYLEMEKKLLIEMGLL 786
K +D+ +KF+V TE+GEVIY DWK KD +TG+++S +P HD T++T+Q+SPF I LTVGGW +IWK+GV GPL+QS + TSG WS +RP VF+IG+ DG ID+WDLL+K+HEP +QN+ I + P+ S KQQ +A D GTLH++E+PW L +TNE+ + HY +RE LE ++ K R Q +++ K Q+++E+ K Y YLE+EK +LI +GL+
Sbjct: 625 KPIDDFCTKFFVGTEEGEVIYTDWKMEKDPETGRLMSKKPVSHHTIHDGTVHTIQRSPFYNDIILTVGGWNVAIWKEGVMTGPLLQSCCAPKRYTSGHWSLTRPGVFYIGREDGYIDIWDLLEKTHEPAQSQNICITMITYIKPWIFSSKQQFIATADYYGTLHILEIPWTLSRPSTNEMASVNHYFEREVKHLEYVEQRKKIREQEKKEMELEMAKKKVKTYQKSKEQMQAELKMDYESYLELEKTVLINLGLI 879 The following BLAST results are available for this feature:
BLAST of TCONS_00020336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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