TCONS_00020317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020317
Unique NameTCONS_00020317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020317 ID=TCONS_00020317|Name=TCONS_00020317|organism=Clytia hemisphaerica|type=transcript|length=338bp
GTAAATTTAGTGAGAGGAAAAAGGATTTAGTGAAGAAGGGAAAGGGAACA
TCTCTTTCTCAGTTGCAATTATCTGTGTAGCATACTAAGACATTCTCATA
TCTTAGTAAACTAAGTATTACATCATTATAAGGTATCTTTTTAACATTCA
AATTAAGTACATAAACTTTCAGGGGTCCCTCAAAAATGATAAATGCAcct
gaacaaatttttattctttcaagGAAAGAACATCATTAAATCTACAAATT
CACCGTTTCCTTGTttcttaatgaccaattaactAGGTGCTACTCATTAA
AAGTCGCCATTATAGGACCATTGTGTAGGGATTGCAGT
Run BLAST on NCBI

transcript from alignment at sc0000351:173371..173708

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020317 ID=TCONS_00020317|Name=TCONS_00020317|organism=Clytia hemisphaerica|type=transcript|length=338bp|location=Sequence derived from alignment at sc0000351:173371..173708 (Clytia hemisphaerica)
ACTGCAATCCCTACACAATGGTCCTATAATGGCGACTTTTAATGAGTAGC
ACCTagttaattggtcattaagaaACAAGGAAACGGTGAATTTGTAGATT
TAATGATGTTCTTTCcttgaaagaataaaaatttgttcaggTGCATTTAT
CATTTTTGAGGGACCCCTGAAAGTTTATGTACTTAATTTGAATGTTAAAA
AGATACCTTATAATGATGTAATACTTAGTTTACTAAGATATGAGAATGTC
TTAGTATGCTACACAGATAATTGCAACTGAGAAAGAGATGTTCCCTTTCC
CTTCTTCACTAAATCCTTTTTCCTCTCACTAAATTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011404XLOC_011404Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020317-exon-sc0000351-1491911889:173371..173708TCONS_00020317-exon-sc0000351-1491911889:173371..173708Clytia hemisphaericaexon
TCONS_00020317-exon-sc0000351-1510915933:173371..173708TCONS_00020317-exon-sc0000351-1510915933:173371..173708Clytia hemisphaericaexon
TCONS_00020317-exon-sc0000351-1575043694:173371..173708TCONS_00020317-exon-sc0000351-1575043694:173371..173708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:173371..173708 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.550037	0.268186	0	0	0.370878	0	0	0.331017	0.231753	0.287063	2.50768	0.549483	0.731625	0	0.156165	0	0	0.21161	0.292351	0	0.531807	0	0.315331	0	0	0	0.75421	0.402457	0	0.311001
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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