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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020302 ID=TCONS_00020302|Name=TCONS_00020302|organism=Clytia hemisphaerica|type=transcript|length=2082bpRun BLAST on NCBI protein sequence of TCONS_00020302-protein >TCONS_00020302-protein ID=TCONS_00020302-protein|Name=TCONS_00020302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=634bp MKLNVKVNELQILHLAVLAKNFPTKCGYLEKKSGKKVVDQTSVRWQRRWCRun BLAST on NCBI transcript from alignment at sc0000351:121161..148962- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020302 ID=TCONS_00020302|Name=TCONS_00020302|organism=Clytia hemisphaerica|type=transcript|length=27802bp|location=Sequence derived from alignment at sc0000351:121161..148962- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000351:121161..148962- >TCONS_00020302 ID=TCONS_00020302|Name=TCONS_00020302|organism=Clytia hemisphaerica|type=CDS|length=24765bp|location=Sequence derived from alignment at sc0000351:121161..148962- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020302 vs. Swiss-Prot (Human)
Match: RGRF2 (Ras-specific guanine nucleotide-releasing factor 2 OS=Homo sapiens GN=RASGRF2 PE=1 SV=2) HSP 1 Score: 317.39 bits (812), Expect = 1.831e-93 Identity = 212/626 (33.87%), Postives = 331/626 (52.88%), Query Frame = 1
Query: 91 MKLNVKVNELQILHLAVLAKNFPTKCGYLEKKSGKKVVDQTSVRWQRRWCAVYYNFMFYYETESSPKPQGVILLDGV---RTDELEVTELPCFGIRVARDEGREY--LFG----------CESDAEREEWVQVINSSS-ANAIWERN---DNLVHQVQALENDLQSLKEEKERLNQELNDNYQQVTRLKLE---LSSVREQAMSFKNRRASAGSLITLRXXXXXXXXXVVTAXXXXXXXXXXXXXXXLQNAIRSWLLRRRWKGLIQSYISTFTADKLKQRNQLLWQFITSEEDYVHQLNVLVGVFLHPIKQRSFNSQI-ISSTEVTKIFANSESILVLHKIFVEGMAMRMKDWPAVQIDDLLFSLVAAVPIYIEYIKNHPEALKTLCECKKRPEFVKMLSWCEAKEECHGQTIEQFLLYPVRVMPTYVRNIFEILEMTPEEHNERKALESILHKLQEAQTYNH-YLDEGESIRHTLEIERLIDGGCIDLLDGEQTFIRHGILKQIG------LHEPRFP--SGRREKTRHCFLFSKHLIIASRTIDGRLRLSKNAGVVPLHHTSLAEEDIGSDFPEYMKNRAFKLL-VEIPMEEDKVHRNDIVLMANKLNEKTLWATDITQCIYNL 1869
M+ +V+ NE L+LA LA+ TK G+L KK+ + + RW +W A+Y N +FY+E E S +P G+ LL+G RT G+R A D+ + LFG CE + + +EW++ I+ +S A+ + ER +H VQ +E + K +L +L D ++ RLK E L+ +E+ +++ + I KI K+Q+ +R WL RR+WK ++Q YI + A+ +++RNQ+++ + +E +YVHQL +LV FL P++ + + + IS +V+ IF NSE+I+ LH+IF +G+ R+ +WP + + DL L+ + IY E+++NH +L+ L CK+ +F K+L EA C G+ +E FL YP+ +P Y+ + E+L TP EH ERK+LE KL+E H + + E+IR L IER+I GC LLD QTFIR G L Q+ L + R S ++E R CFLF+KH +I +R+ G+L L K GV+ L +L EE SD + F L +I +E +VL+A EK W +DI+QC+ N+
Sbjct: 1 MQKSVRYNEGHALYLAFLARKEGTKRGFLSKKTAE------ASRWHEKWFALYQNVLFYFEGEQSCRPAGMYLLEGCSCERTPAPPRAGAGQGGVRDALDKQYYFTVLFGHEGQKPLELRCEEEQDGKEWMEAIHQASYADILIEREVLMQKYIHLVQIVETE----KIAANQLRHQLEDQDTEIERLKSEIIALNKTKERMRPYQSNQEDEDPDI--------------------------KKIKKVQSFMRGWLCRRKWKTIVQDYICSPHAESMRKRNQIVFTMVEAESEYVHQLYILVNGFLRPLRMAASSKKPPISHDDVSSIFLNSETIMFLHEIFHQGLKARIANWPTLILADLFDILLPMLNIYQEFVRNHQYSLQVLANCKQNRDFDKLLKQYEANPACEGRMLETFLTYPMFQIPRYIITLHELLAHTPHEHVERKSLEFAKSKLEELSRVMHDEVSDTENIRKNLAIERMIVEGCDILLDTSQTFIRQGSLIQVPSVERGKLSKVRLGSLSLKKEGERQCFLFTKHFLICTRSSGGKLHLLKTGGVLSLIDCTLIEEPDASDDDSKGSGQVFGHLDFKIVVEPPDAAAFTVVLLAPSRQEKAAWMSDISQCVDNI 590 The following BLAST results are available for this feature:
BLAST of TCONS_00020302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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