TCONS_00020290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020290
Unique NameTCONS_00020290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020290 ID=TCONS_00020290|Name=TCONS_00020290|organism=Clytia hemisphaerica|type=transcript|length=1218bp
TTACCCCAAAACATTTTGACTCAAGAAAATTCGGCCTCAATGGACATTGA
CATCCACAAAGTCAGAGTGTGATGCTCcacaaaaattcttgaaaattcgc
catttgttttgttttgattccccATGCGTGAAAATTCGTGACATTTAACA
TGACTTTAGAATGTCTCGATTAGTCAAATGATCAATGGGTATGCTTATTA
GCTTTTCGCTGTAGTAATCAAGTCAAAGTAGATCGCCATTTTGAAAGTCG
GACTTTCGATATGTCTTTTCAAACATTTCAGTAGGCCCGAAGGTTGAGAA
AGAACGGAGCCGAAATGACGAAGTACGCCACCGAACCAGAAAACCCAACC
AAGTCATGCAAGGCTCGTGGCTCATACTTGCGTGTTCACTTTAAGAACAC
ACGGGAAACAGCCCAAGCCATCAAAAAGATGCACATCCGTAAAGCTTACA
GATATCTGAAGGATGTTATCGCTCAAAAACAAATTGTTCCATTCAGACGC
TTCAGTGGAGGTGTTGGACGTAAAGCTCAGgctAAAGCATTTGGTCATTC
TCAAGGTAGATGGCCAAAAAAGAGTGCAACATTCTTATTGCAACTTTTAA
AGAATGCTGAAAGCAATGCCGATGTTAAGGGATTAGATGTCGACTCCCTT
GTCATCGACCATATTCAAGTAAACAGAGCTCCATACATGAGAAGGCGAAC
ATACCGTGCTCACGGTCGTATTAACCCATACATGTCGAGTCCATGCCACG
TTGAAATGATCTTATCTGAAAAAGAACAAGTTGTTCCACGTGCCGAGGAA
GAGGTGGAAGTCAAGAAAGTCTCCAAGAAGAAGCTTGCCCGTGAAAAACT
TAAAGCTCGCGAATAAATTCAAATCTCAACCTGAAACACCTTTCTTCGTT
ATTTTCTTATCCAACTCTTTCAATGTGAAGTTTTCATATCCTGATTCTAA
TTAGTAGGCCTGATTGATGTAATTAGCTTAAGAATCAGGGACTAAAATGA
TGTAAACTGCATTTAGTAACACAAAAACGTGCAAAATTGGAACGAATCAc
ataatagcgaggttaagcaagaagctatctattacgtacggaatctatta
cgtgagtttttagACTGGATCCGAGGCATTTTAGCCTGATTCCTAAAGCT
TCACGGCATAGAAAAAAAAGTGGTTAAGCAAAAAGGCGATCTATGacgta
tgacgtaatgtttatttt
Run BLAST on NCBI

protein sequence of TCONS_00020290-protein

>TCONS_00020290-protein ID=TCONS_00020290-protein|Name=TCONS_00020290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MTKYATEPENPTKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKD
VIAQKQIVPFRRFSGGVGRKAQAKAFGHSQGRWPKKSATFLLQLLKNAES
NADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHVEMIL
SEKEQVVPRAEEEVEVKKVSKKKLAREKLKARE
Run BLAST on NCBI

transcript from alignment at sc0000351:248942..254797+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020290 ID=TCONS_00020290|Name=TCONS_00020290|organism=Clytia hemisphaerica|type=transcript|length=5856bp|location=Sequence derived from alignment at sc0000351:248942..254797+ (Clytia hemisphaerica)
TTACCCCAAAACATTTTGACTCAAGAAAATTCGGCCTCAATGGACATTGA
CATCCACAAAGTCAGAGTGTGATGCTCcacaaaaattcttgaaaattcgc
catttgttttgttttgattccccATGCGTGAAAATTCGTGACATTTAACA
TGACTTTAGAATGTCTCGATTAGTCAAATGATCAATGGGTATGCTTATTA
GCTTTTCGCTGTAGTAATCAAGTCAAAGTAGATCGCCATTTTGAAAGTCG
GACTTTCGATATGTCTTTTCAAACATTTCAGTAGGCCCGAAGGTTGAGAA
AGAACGGTGAGTAGTAACCTTCTActtgaaatctttcaaaatctcCTACA
TCTTTGCTCTCACTACTTAGTTGTNCTTCTACTTGAAATCTCTCAAAATC
TCCTACATCTTTGCTCTCACTACTTAGTTGTTAGATAGTCTTTACTGTTC
AATACCTCTACTGTCtcatatttttaagattttgtcagTCCCTTACTGAC
TGCACCGAATATATCATTCATTGTAGGAGCCGAAATGACGAAGTACGCCA
CCGAACCAGAAAACCCAACCAAGTCATGCAAGGCTCGTGGCTCATACTTG
CGTGTTCACTTTAAGAACACACGGGAAACAGCCCAAGCCATCAAAAAGAT
GCACATCCGTAAAGCTTACAGATATCTGAAGGATGTTATCGCTCAAAAAC
AAATTGTTCCATTCAGACGCTTCAGTGGAGGTGTTGGACGTAAAGCTCAG
GTGAGATATCAAGACTAAATTTCTTAATTCTTTAAATCTTACAGCTCACA
CTTGATTTACACAGAAAGAAGAGTGTGAAAAACAATGAGATGTCAAAACT
GGGAATGATGTGAAATTGTCGAagcaaaatattgaattttcaaatggaGC
TTATAATAgtatcaaatttgtgacatggAAGCTTGAATAACAGGAGATAG
ATACTTAAACTGGAAATGATTTTTGTCTAAATCAtaatattgttattgat
tggCCTACACGTTATGTTGTTGGATGGAGAATGCATTGAACCTTTCTACA
AGTGAAACATTGGTTTAGCAAAGAATCAAGTAGCATGATGTATAAAGTAT
TGCTTATGGATTATAAATGCTcttcattttgaaattgtttatctattgct
ggAAGTTTGTCATCGCCAATAAAAGCCTGTAACAGTGGAACTGCATTATT
GTTATCAATTAAACTTACTGTTTCTTGTTGTGTTGAGCTGGTTGATTTTG
TTGATCTTGTTTTAAGTGAAGTTTTTCatgctttcagtggagtttgtgga
cgaaattggctgaaaagttttttgtccCAATACTTATATTTTATCGGTAT
GTAGCCCAATGCTGATAAAATATTTGTAAGTTTTTTTGTTGAGGGTCccc
tattctcaacttcagttgagctagaatctgagaatgtctgtgtgtgtgtc
tgtgtgcctgtcaccaaaactttggggcaggctggagacttcaaaaattg
ggctgaaattttgcacacttgatccttgggcaaatccctgggggtgtctt
tttcattttttcaaaatttatttttggggcctggggacgtgttttttcgc
caaaacgaggctaaaactttggggcaggctggagacttcaaaaatggtcc
gatttggctgaaattttgcacacttgatccttaggcaaatccctgggggt
gtttttttcattttttcaaaattttaatttttgcggcctggggacgagtt
tttcgccaaaacaaggctaaaactttggggcaggctggagacttcaaaaa
tggtccgattaggctgaaatttcgcacacttgatccttgggcaaatccct
gggggtgtttttttaattttttcaaaatttaatttttggggcctggggat
gagtttttcgccaaaGCGAGGATAAAACTTaagggcaggctggagactca
aaaatggtccgaattggctgaaattttgcacacttgatccttgggcaaat
ccctgggggtgtttttttcattttttcaaaattttgatttttggggcctg
gggatgagtttttcgccaaaGCGAGGATAAAACTTaagggcaggctggag
actcaaaaatggtccgaattggctgaaattttgcacacttgatccttggg
caaatccctgggggtgtttttttcattttttcaaaattttgatttttggg
gcctggggacaagttttaagcctaaacgaggctaaaacccaaagtgcaat
aatttttcttaagccatcGAGTTAACAATTGGGCCTacaaatgatttcaa
agatactgaagttgagccagtgcggttagcacgttcgacagttatGCATC
CAGGATGGGATTCCTGTTCTTTTAAAATAACTGAAGATTCTCTGTCGGAT
GCAAATATCATATTTGAAACTAGTTTGATGCTGCTTCACATCAATTGATT
CAGCAATAGGGTTTCAAGACATTTTCAGTTGATAGAATGGTACATACTTG
ATCATGGTACATACCTGATAATTGTGGGTTTTCAGCATTTGATACCaaca
ttttttgggaaaaatatttcagggtggtataatatcaaaaatagaaaaaa
ccaACAGAGACAAATTGGTGGAAAGCAACAAAATAATGTGCATGCGACTG
TTTTGTTGATTGGAAAAGGTGTATTGGGTGGGAGTACGAAGACTGAAAGT
TGAAGCCAGTGAAAagctaaattttattaaattaaggAAATGTTCAAATC
TTTTCTTGTTATTTCAGTTGGTTTGAGGGGGAACTAAAgcttttaaaact
taaaaatcacAGTTTTATTGTGTGTTTCCAGGCCACAAAATTGCCAGGTC
TGAAGACATGTTTTTGTGGCCAAGTAACTTTTTGGCCCTTCATTTTGCCC
GGAAACCAGAGTATGCTAAATCTGTGGGGTTTGAggttttcatgaatttt
gaagaAGTTCTCAAGCAGGCAGTACTGCAGTTCCTTGGCAGATATTCTTG
ATTAGGTTCACTTCACCTTATTTTCTGCGTGCTGCAATGCAATATCCCTT
AACATGGGCTAAAAAAATATTGGACAAATAAGCAATAGAAACTCTATGCT
AATCCCTTCCtgttttaaaagtgttttttccAATTCAGGAAGAAGTTACT
GACCTGTGCCAGTCGCAGGAAAGAGGATTGCTAaattgaaattactaaaa
tttgACCTGGGTCTATAAATTTTGTTATTATTAACTGTTAAATGATTATG
TTAACTCTAACGGTcatactttttattttcaggctAAAGCATTTGGTCAT
TCTCAAGGTAGATGGCCAAAAAAGAGTGCAACATTCTTATTGCAACTTTT
AAAGAATGCTGAAAGCAATGCCGATGTTAAGGTAAATCATCGCAATTTTC
CCTAATCCTTAACAAATTATATGAACTCtggcaatattttcaaatgCATT
GTGGTATCTCCATTGCTTTCTACAATAAAGTTCTGGTCGTTTAACCAATG
CTATATCAATATCCAAAGTGTCACATCATCGTTTGGTACTGTTGACTTCT
ACAACTTTATCATGGAATGACATGGGACATGCTATTAGAAATCTTTCTGA
TAATTTcatcaaaactcaaatttttTAAGAGTAGAGGCTTCTGAAAGTCA
CCAACAGAAGAATTAGACAAACAAACATAAAATTGTGGTGTCATCATATG
CAAGTTTTATAATCATTTGAACTCATTAAAAACATCTTAAAATACATTTT
AACCAATTTTGATGTTTCTTATATTTAGGGATTAGATGTCGACTCCCTTG
TCATCGACCATATTCAAGTAAACAGAGCTCCATACATGAGAAGGCGAACA
TACCGTGCTCACGGTCGTATTAACCGTAAGTATCATTTGTGttgtaaagt
ctgtctcaaaataatttgcagtcgcgacaaaaaaggctataacttttgat
agaattcgaattagacaggggttttgtgcttgttgaaaagacaaacagga
gtggaatattatcataaaggaaaaaaaattcgaaaaatattgaaaatgaa
ggagaagaaaatcaacttcttgtagaataatgcaatgattttgattttta
tatcaGAAATTCTTTACTCTTAGAACGtcaaaaatacgtcaaaaatgttc
aatcagtcaaaaaaatacAGCTCAAAACTTTGCCCTGGTTGACTTTaaaa
agggctcttttttgttgtttttttgatgattttttaagtCAATCAGTAAT
AAACTTTGGACTATATCTTTCGTTGGaataaatttctttggaaaatctTT
TAACATTAATGATGTTCTAAAGATCAAGAATATTGCTAATTGATAATTAA
agcacaattattgaagaagttgattttcttcttcttcattttcaatcttc
atttttcaatttttttcgagttttttcTCTATGATAGTATTCCAttcctg
tttgtcttttcaaaaagcacaaaaccgctatctaattAGAATTCGCTCAA
AAGTTATAGCTTTTTTTGTCTcggctgcaaattattttgagacttTAGAG
TGTTATTGGACAGTCCAAAGTCTGTTGAAGTATTCGTGAAAATCCAAAAC
CAAAAGTGATTTTCTTATTGCGGTCTGAGGTCTTTGATAAAGGAAAGGGA
TGGTGcttaaaattaaaagtttttctaataaatgctcccgtttcatatca
ggacagtggcTGCCTAccgtgaatcaccgattaagcgcccgggcgcttat
tttatttttcaggctctgaggggggcgcttattcaagcagGGCACTTATT
CAAGCAGGGcacttattcaagcggggcgcttatttttttatttcagaaat
tcgtatatcaacaaattcggagTCTGCTCAAACTTAacttcaaaaaagga
tgaataaaagaaaaattcaataagaaactgaaaaaaagaaagctaaaaga
ccttgatttttatttttgttccaatttttttcaactgttAATCATCCGAA
GAGAAATTCTTATCCCGGAAATTAGCCTAGGCCACcaattcgaataagcg
cccctccctggagggggcgcttattcgagcggggcgcttataaaattatt
ttaactaaattggGGGctcttattcgagcggggcgcttaatcggtgattt
acggtatTGGTGTATTATGCTTATacaagcaaaaatgtttttctttttct
ctttctgaccaatcttgctccacattcgtgtcaatctCATGTGAAAAAGC
TTATGATTTAAAATCAAGTAAGCAagcgatatcactcttatttaaaacaa
aacgtTTAAGTGACATTTCATTGCTTTAAAGTCAACAACTAACATGAACG
CTTTCTTCTTTCAGCATACATGTCGAGTCCATGCCACGTTGAAATGATCT
TATCTGAAAAAGAACAAGTTGTTCCACGTGCCGAGGAAGAGGTGGAAGTC
AAGAAAGTCTCCAAGAAGAAGCTTGCCCGTGAAAAACTTAAAGCTCGCGA
ATAAATTCAAATCTCAACCTGAAACACCTTTCTTCGTTATTTTCTTATCC
AACTCTTTCAATGTGAAGTTTTCATATCCTGATTCTAATTAGTAGGCCTG
ATTGATGTAATTAGCTTAAGAATCAGGGACTAAAATGATGTAAACTGCAT
TTAGTAACACAAAAACGTGCAAAATTGGAACGAATCAcataatagcgagg
ttaagcaagaagctatctattacgtacggaatctattacgtgagttttta
gACTGGATCCGAGGCATTTTAGCCTGATTCCTAAAGCTTCACGGCATAGA
AAAAAAAGTGGTTAAGCAAAAAGGCGATCTATGacgtatgacgtaatgtt
tatttt

Coding sequence (CDS) from alignment at sc0000351:248942..254797+

>TCONS_00020290 ID=TCONS_00020290|Name=TCONS_00020290|organism=Clytia hemisphaerica|type=CDS|length=2208bp|location=Sequence derived from alignment at sc0000351:248942..254797+ (Clytia hemisphaerica)
ATGACGAAGTACGCCACCGAACCAGAAAACCCAACCAAGTCATGCAAGGC
TCGTGGCTCATACTTGCGTGTTCACTTTAAGAACACACGGGAAACAGCCC
AAGCCATCAAAAAGATGCACATCCGTAAAGCTTACAGATATCTGAAGGAT
GTTATCGCTCAAAAACAAATTGTTCCATTCAGACGCTTCAGTGGAGGTGT
TGGACGTAAAGCTCAGgctAAAGCATTTGGTCATTCTCAAGGTAGATGGC
CAAAAAAGAGTGCAACATTCTTATTGCAACTTTTAAAGAATGCTGAAAGC
AATGCCGATGTTAAGGGATTAGATGTCGACTCCCTTGTCATCGACCATAT
TCAAGTAAACAGAGCTCCATACATGAGAAGGCGAACATACCGTGCTCACG
GTCGTATTAACCCATACATGTCGAGTCCATGCCACGTTGAAATGATCTTA
TCTGAAAAAGAACAAGTTGTTCCACGTGCCGAGGAAGAGGTGGAAGTCAA
GAAAGTCTCCAAGAAGAAGCTTGCCCGTGAAAAACTTAAAGCTCGCGAAT
AAATGACGAAGTACGCCACCGAACCAGAAAACCCAACCAAGTCATGCAAG
GCTCGTGGCTCATACTTGCGTGTTCACTTTAAGAACACACGGGAAACAGC
CCAAGCCATCAAAAAGATGCACATCCGTAAAGCTTACAGATATCTGAAGG
ATGTTATCGCTCAAAAACAAATTGTTCCATTCAGACGCTTCAGTGGAGGT
GTTGGACGTAAAGCTCAGgctAAAGCATTTGGTCATTCTCAAGGTAGATG
GCCAAAAAAGAGTGCAACATTCTTATTGCAACTTTTAAAGAATGCTGAAA
GCAATGCCGATGTTAAGGGATTAGATGTCGACTCCCTTGTCATCGACCAT
ATTCAAGTAAACAGAGCTCCATACATGAGAAGGCGAACATACCGTGCTCA
CGGTCGTATTAACCCATACATGTCGAGTCCATGCCACGTTGAAATGATCT
TATCTGAAAAAGAACAAGTTGTTCCACGTGCCGAGGAAGAGGTGGAAGTC
AAGAAAGTCTCCAAGAAGAAGCTTGCCCGTGAAAAACTTAAAGCTCGCGA
ATAAATGACGAAGTACGCCACCGAACCAGAAAACCCAACCAAGTCATGCA
AGGCTCGTGGCTCATACTTGCGTGTTCACTTTAAGAACACACGGGAAACA
GCCCAAGCCATCAAAAAGATGCACATCCGTAAAGCTTACAGATATCTGAA
GGATGTTATCGCTCAAAAACAAATTGTTCCATTCAGACGCTTCAGTGGAG
GTGTTGGACGTAAAGCTCAGgctAAAGCATTTGGTCATTCTCAAGGTAGA
TGGCCAAAAAAGAGTGCAACATTCTTATTGCAACTTTTAAAGAATGCTGA
AAGCAATGCCGATGTTAAGGGATTAGATGTCGACTCCCTTGTCATCGACC
ATATTCAAGTAAACAGAGCTCCATACATGAGAAGGCGAACATACCGTGCT
CACGGTCGTATTAACCCATACATGTCGAGTCCATGCCACGTTGAAATGAT
CTTATCTGAAAAAGAACAAGTTGTTCCACGTGCCGAGGAAGAGGTGGAAG
TCAAGAAAGTCTCCAAGAAGAAGCTTGCCCGTGAAAAACTTAAAGCTCGC
GAATAAATGACGAAGTACGCCACCGAACCAGAAAACCCAACCAAGTCATG
CAAGGCTCGTGGCTCATACTTGCGTGTTCACTTTAAGAACACACGGGAAA
CAGCCCAAGCCATCAAAAAGATGCACATCCGTAAAGCTTACAGATATCTG
AAGGATGTTATCGCTCAAAAACAAATTGTTCCATTCAGACGCTTCAGTGG
AGGTGTTGGACGTAAAGCTCAGgctAAAGCATTTGGTCATTCTCAAGGTA
GATGGCCAAAAAAGAGTGCAACATTCTTATTGCAACTTTTAAAGAATGCT
GAAAGCAATGCCGATGTTAAGGGATTAGATGTCGACTCCCTTGTCATCGA
CCATATTCAAGTAAACAGAGCTCCATACATGAGAAGGCGAACATACCGTG
CTCACGGTCGTATTAACCCATACATGTCGAGTCCATGCCACGTTGAAATG
ATCTTATCTGAAAAAGAACAAGTTGTTCCACGTGCCGAGGAAGAGGTGGA
AGTCAAGAAAGTCTCCAAGAAGAAGCTTGCCCGTGAAAAACTTAAAGCTC
GCGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011391XLOC_011391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020290-exon-sc0000351-1491911889:248942..249247TCONS_00020290-exon-sc0000351-1491911889:248942..249247Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1510915933:248942..249247TCONS_00020290-exon-sc0000351-1510915933:248942..249247Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1575043694:248942..249247TCONS_00020290-exon-sc0000351-1575043694:248942..249247Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1491911889:249468..249691TCONS_00020290-exon-sc0000351-1491911889:249468..249691Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1510915933:249468..249691TCONS_00020290-exon-sc0000351-1510915933:249468..249691Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1575043694:249468..249691TCONS_00020290-exon-sc0000351-1575043694:249468..249691Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1491911889:252224..252322TCONS_00020290-exon-sc0000351-1491911889:252224..252322Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1510915933:252224..252322TCONS_00020290-exon-sc0000351-1510915933:252224..252322Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1575043694:252224..252322TCONS_00020290-exon-sc0000351-1575043694:252224..252322Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1491911889:252720..252816TCONS_00020290-exon-sc0000351-1491911889:252720..252816Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1510915933:252720..252816TCONS_00020290-exon-sc0000351-1510915933:252720..252816Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1575043694:252720..252816TCONS_00020290-exon-sc0000351-1575043694:252720..252816Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1491911889:254306..254797TCONS_00020290-exon-sc0000351-1491911889:254306..254797Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1510915933:254306..254797TCONS_00020290-exon-sc0000351-1510915933:254306..254797Clytia hemisphaericaexon
TCONS_00020290-exon-sc0000351-1575043694:254306..254797TCONS_00020290-exon-sc0000351-1575043694:254306..254797Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020290-proteinTCONS_00020290-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000351supercontigsc0000351:248942..254797 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1310.02	1322.86	1438.91	1566.87	951.015	790.118	1218.94	1268	1971.16	1809	2058.33	2641.77	3115.09	3125.64	2938.23	2730.38	3115.46	3125.02	1742.99	1792.46	2834.34	2686.77	2064.82	1978.98	1782.56	1939.27	2568.65	2536.6	1663.39	1772.01
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005721Ribosomal_L22/L17_euk/arc
IPR001063Ribosomal_L22
IPR018260Ribosomal_L22/L17_CS
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00020290 vs. Swiss-Prot (Human)
Match: RL17 (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 277.33 bits (708), Expect = 1.711e-91
Identity = 127/158 (80.38%), Postives = 144/158 (91.14%), Query Frame = 3 
Query:  315 MTKYATEPENPTKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAQKQIVPFRRFSGGVGRKAQAKAFGHSQGRWPKKSATFLLQLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHVEMILSEKEQVVP 788
            M +Y+ +PENPTKSCK+RGS LRVHFKNTRETAQAIK MHIRKA +YLKDV  QKQ VPFRR++GGVGR AQAK +G +QGRWPKKSA FLL +LKNAESNA++KGLDVDSLVI+HIQVN+AP MRRRTYRAHGRINPYMSSPCH+EMIL+EKEQ+VP
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVP 158
The following BLAST results are available for this feature:
BLAST of TCONS_00020290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL171.711e-9180.3860S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
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