TCONS_00020290-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020290-protein
Unique NameTCONS_00020290-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length183

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020290-protein ID=TCONS_00020290-protein|Name=TCONS_00020290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MTKYATEPENPTKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKD
VIAQKQIVPFRRFSGGVGRKAQAKAFGHSQGRWPKKSATFLLQLLKNAES
NADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHVEMIL
SEKEQVVPRAEEEVEVKKVSKKKLAREKLKARE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011391XLOC_011391Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020290TCONS_00020290Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005721Ribosomal_L22/L17_euk/arc
IPR001063Ribosomal_L22
IPR018260Ribosomal_L22/L17_CS
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.470.10coord: 1..183
e-value: 2.0E-81
score: 271.9
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealTIGRFAMTIGR01038TIGR01038coord: 4..153
e-value: 1.4E-63
score: 211.2
IPR005721Ribosomal protein L22/L17, eukaryotic/archaealHAMAPMF_01331_ARibosomal_L22_Acoord: 2..153
score: 24.187
IPR001063Ribosomal protein L22/L17PFAMPF00237Ribosomal_L22coord: 17..150
e-value: 9.2E-44
score: 147.8
IPR001063Ribosomal protein L22/L17CDDcd00336Ribosomal_L22coord: 15..150
e-value: 4.75556E-36
score: 122.214
IPR001063Ribosomal protein L22/L17SUPERFAMILY54843Ribosomal protein L22coord: 1..153
IPR018260Ribosomal protein L22/L17, conserved sitePROSITEPS00464RIBOSOMAL_L22coord: 126..150

Blast
[Close]
BLAST of TCONS_00020290-protein vs. Swiss-Prot (Human)
Match: RL17 (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 286.96 bits (733), Expect = 2.553e-100
Identity = 131/164 (79.88%), Postives = 149/164 (90.85%), Query Frame = 0 
Query:    1 MTKYATEPENPTKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAQKQIVPFRRFSGGVGRKAQAKAFGHSQGRWPKKSATFLLQLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHVEMILSEKEQVVPRAEEEV 164
            M +Y+ +PENPTKSCK+RGS LRVHFKNTRETAQAIK MHIRKA +YLKDV  QKQ VPFRR++GGVGR AQAK +G +QGRWPKKSA FLL +LKNAESNA++KGLDVDSLVI+HIQVN+AP MRRRTYRAHGRINPYMSSPCH+EMIL+EKEQ+VP+ EEEV
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEV 164
The following BLAST results are available for this feature:
BLAST of TCONS_00020290-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL172.553e-10079.8860S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
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