|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020282 ID=TCONS_00020282|Name=TCONS_00020282|organism=Clytia hemisphaerica|type=transcript|length=1895bpRun BLAST on NCBI protein sequence of TCONS_00020282-protein >TCONS_00020282-protein ID=TCONS_00020282-protein|Name=TCONS_00020282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp MEEMETKKHPPTTFNEWFELNNFEEWPHHVEEEDDETELHQTPAYLGMSTRun BLAST on NCBI transcript from alignment at sc0000351:72998..93354+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020282 ID=TCONS_00020282|Name=TCONS_00020282|organism=Clytia hemisphaerica|type=transcript|length=20357bp|location=Sequence derived from alignment at sc0000351:72998..93354+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000351:72998..93354+ >TCONS_00020282 ID=TCONS_00020282|Name=TCONS_00020282|organism=Clytia hemisphaerica|type=CDS|length=24960bp|location=Sequence derived from alignment at sc0000351:72998..93354+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020282 vs. Swiss-Prot (Human)
Match: F227B (Protein FAM227B OS=Homo sapiens GN=FAM227B PE=2 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 1.410e-37 Identity = 94/310 (30.32%), Postives = 159/310 (51.29%), Query Frame = 3
Query: 483 RNIETVAYPGFYYHENTPLPGALEAPHLMNHVTSLQEFSNGFRKMWRKYFLSESSVAIMQDAFWWIFL-QFKGEEGHEEIQSQIFHRLSNNFVSLFLDVAMNDKDHFFKFFADCLSQALYAAFSKAFPASINKFNHQFRRRIVSLVYEWVTGTQPHVDEILHQWDLESLDNRSQN----------KEVLDDHALKTSFSFDENTLILPNEASPPSTNKNHHAEDDVMFGTKKPNKKIKESHPSGEGPQFEKIAFDIHGRSPFIMHYLASKELQAEEESLRKIVTRTQMVPKEDLSRQNETYRSIIDKQKK 1379
+NIE ++ GF +E T LP L+A + + F K+W+ +FLSE+S+A++ D+FWW FL +F+ + E Q +F R+S ++V+LF+ + ++ KD FF+ + DCL+QA+YA F +AFP S FN +F+ + + ++ W +G +P +H W L+ L + + KE + D S S D N + + N + + TK SH S GP+F ++ F+ G+SP I++YL EL ++ +K + + +E L TYR +I + K+
Sbjct: 144 KNIEGCSFTGFKANELTQLPRHLDAEQIYLFILKAHNFDERVFKIWKTHFLSEASIALLHDSFWWWFLHKFRPDR---ENQDCLFDRISESYVTLFMSIPLSRKDAFFQIYPDCLAQAIYATFHEAFPESSYLFNDEFKEDLGNNIFLWCSGLKPQKGFWIH-WKLKELSTTTIHGSKKAPAKSVKERIADSQEHISTSIDFNIIKILNNPRAYTLPISKEESRLSRLATK--------SHYSSTGPEFNRVLFNFGGQSPLILYYLKMHELAGISKAPKKTKIKLTKIFQEPLP--APTYRDVIKEAKR 439 The following BLAST results are available for this feature:
BLAST of TCONS_00020282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.