TCONS_00020279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020279
Unique NameTCONS_00020279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020279 ID=TCONS_00020279|Name=TCONS_00020279|organism=Clytia hemisphaerica|type=transcript|length=631bp
GCTTAAATTCAGTGATGCAGTAGAGTCAATGACCCCTGAAactcaaattt
tcttctttaattttaTGGTTGTTTCCTTAAACATTTATTTGTCTACGTAT
TGCACATTATATTGTTTCCTAagttactttttaaaaataaagggGATAAG
GTGATGGGAATTCAATGTTCTGTTTACCGTTGACTGTCACATGCTGCTAA
AAAAAGTCattgacaatcaatcaaactctcaaacatcaaagaaaataCTG
ATATTACTCCACTCACACAGGTTCTTCCCATATTATTTGGTTAACTTCAC
AGTACTTCTTCCTATTATTCCAATTtccaaagaagggtgtcagaattaga
agagggatgtcaacattagaccaacttgcgGTAGTAGAGTTGGGTATGGG
TgaggtttgggtgtggttttgTATCAGATTGGCAAgaaattgggttatta
tcagttaagGTCAGGCTTGGAGNTTTGGGTGTGGTTTTGTATCAGATTGG
CAAgaaattgggttattatcagttaagGTCAGGCTTGGAGCTcaaaacaa
gcactcttttgtgattgtCTCTTAATATAGTCTGGTttgtagtttgtaca
atataaattaTAGCCCTCAGAAATGCTTTTC
Run BLAST on NCBI

transcript from alignment at sc0000350:511516..512146

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020279 ID=TCONS_00020279|Name=TCONS_00020279|organism=Clytia hemisphaerica|type=transcript|length=631bp|location=Sequence derived from alignment at sc0000350:511516..512146 (Clytia hemisphaerica)
GAAAAGCATTTCTGAGGGCTAtaatttatattgtacaaactacaaACCAG
ACTATATTAAGAGacaatcacaaaagagtgcttgttttgAGCTCCAAGCC
TGACcttaactgataataacccaatttcTTGCCAATCTGATACAAAACCA
CACCCAAANCTCCAAGCCTGACcttaactgataataacccaatttcTTGC
CAATCTGATAcaaaaccacacccaaacctcACCCATACCCAACTCTACTA
Ccgcaagttggtctaatgttgacatccctcttctaattctgacacccttc
tttggaAATTGGAATAATAGGAAGAAGTACTGTGAAGTTAACCAAATAAT
ATGGGAAGAACCTGTGTGAGTGGAGTAATATCAGtattttctttgatgtt
tgagagtttgattgattgtcaatGACTTTTTTTAGCAGCATGTGACAGTC
AACGGTAAACAGAACATTGAATTCCCATCACCTTATCccctttattttta
aaaagtaactTAGGAAACAATATAATGTGCAATACGTAGACAAATAAATG
TTTAAGGAAACAACCAtaaaattaaagaagaaaatttgagtTTCAGGGGT
CATTGACTCTACTGCATCACTGAATTTAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011383XLOC_011383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020279-exon-sc0000350-1491911889:511516..512146TCONS_00020279-exon-sc0000350-1491911889:511516..512146Clytia hemisphaericaexon
TCONS_00020279-exon-sc0000350-1510915933:511516..512146TCONS_00020279-exon-sc0000350-1510915933:511516..512146Clytia hemisphaericaexon
TCONS_00020279-exon-sc0000350-1575043694:511516..512146TCONS_00020279-exon-sc0000350-1575043694:511516..512146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:511516..512146 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.924775	0.901802	1.71587	3.27292	0.566869	0.179655	0.216704	0.506654	0.141924	0	0.170349	0.0559905	0.0560058	0.0582491	0.23869	0.256488	0	0	0.178738	0.093518	0.0812841	0	0.0963936	0.175271	0	0	0.230555	0.246054	0.0933117	0.0950698
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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