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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020257 ID=TCONS_00020257|Name=TCONS_00020257|organism=Clytia hemisphaerica|type=transcript|length=2536bpRun BLAST on NCBI protein sequence of TCONS_00020257-protein >TCONS_00020257-protein ID=TCONS_00020257-protein|Name=TCONS_00020257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=609bp LFSSSAIKITHRKKQFSSLLDVNLTNNFLRQNTTTSKKSVKMDLSRKLNFRun BLAST on NCBI transcript from alignment at sc0000350:494320..501247- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020257 ID=TCONS_00020257|Name=TCONS_00020257|organism=Clytia hemisphaerica|type=transcript|length=6928bp|location=Sequence derived from alignment at sc0000350:494320..501247- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000350:494320..501247- >TCONS_00020257 ID=TCONS_00020257|Name=TCONS_00020257|organism=Clytia hemisphaerica|type=CDS|length=25620bp|location=Sequence derived from alignment at sc0000350:494320..501247- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020257 vs. Swiss-Prot (Human)
Match: MPIP2 (M-phase inducer phosphatase 2 OS=Homo sapiens GN=CDC25B PE=1 SV=2) HSP 1 Score: 164.081 bits (414), Expect = 1.683e-42 Identity = 92/192 (47.92%), Postives = 136/192 (70.83%), Query Frame = 3
Query: 1221 DISKLFDMDDKKLIGDKSKEYCLPTCQSKHPDLKGITPETLTDLLEGKYNDVIGEFHIIDSRYPYEFEGGHIKDALNIFEKQELVNRFLKNP-PKSDNEKRTVLIFHCEFSSKRGPSMSRFLRNKDRDAHQENXXXXXXXXXXXXXXXXKEFYSNQPGYCEPKEYREMLDPEYQQQLKLFSKRSKSWSEDKS 1793
+I L D D ++LIGD SK + L T KH DLK I+PET+ LL GK+++++ +F I+D RYPYE+EGGHIK A+N+ +++ + LK+P +KR +LIFHCEFSS+RGP M RF+R +DR + +YP LYYPE+Y+L+GGYKEF+ P +CEP++YR M ++ +LK F +++SW+ ++S
Sbjct: 380 EIENLLDSDHRELIGDYSKAFLLQTVDGKHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVN--DYPSLYYPEMYILKGGYKEFFPQHPNFCEPQDYRPMNHEAFKDELKTFRLKTRSWAGERS 569 The following BLAST results are available for this feature:
BLAST of TCONS_00020257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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