TCONS_00020199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020199
Unique NameTCONS_00020199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020199 ID=TCONS_00020199|Name=TCONS_00020199|organism=Clytia hemisphaerica|type=transcript|length=804bp
attatttttgatttgtatACTTTAATTTTCCTCGTTTTCTTTCAGCTCAG
TCAGGGAGATCGAGACTAATTTAGTTATTATTCTACTTTTTCTTTAAACG
GAATATTATGCAAATTATTGAGGTGGTCAGGACTGACGGAGTcgcaaatt
caaaaaTAACGGACTCTATTTACACACTTCACTTGGACAATACGACCACC
AAAGATCTTGGTCGATACAAATGTCGTGTGCAATATGAATTTCATATGAC
CGAATCTGCAGAAGTCGTCATCAAATCATCCAAGCCAGCTAGCCGAAATA
TTATACTACCAATCAAGAACGACAACGACACGTCATCGCATTCCATATTC
TGTTCACTACCGGTGCTGGAGAATCAACCGGTGTTCTGGTTCAAGAATGG
CCACCCGCTCCACCTGGGTGATCAGAACCTTGAACCCAACAATGGATACA
TCAACAACATGACCACATATGTGTTCAATACTGATTGGGGTTTCAACGGG
ATTTATGATTGTTATTCGGGTGACCGACATCTACCTTTCGATGTCATTTA
TTcaTTCAACTTGACAGCGTTACCGCCTAACGCCACAACTGATGGTGTGT
CGAGAGCTCCCGACGATGATGaAATCCACGACAACCTGACCATCAAGGGA
TCTCATGTCGTCAACCACCCTGGCGACAATTTGACGTTGACATGCGACGG
TTTAAAAGCCGACAATGTTGTCGTTTATTGGTTCTTCGGAGAACAGCTTA
TTTTGATGAGATCTAGTTATGAAAATTACACCTGGACAGAATCTGATAAT
TATG
Run BLAST on NCBI

transcript from alignment at sc0000350:19406..23090-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020199 ID=TCONS_00020199|Name=TCONS_00020199|organism=Clytia hemisphaerica|type=transcript|length=3685bp|location=Sequence derived from alignment at sc0000350:19406..23090- (Clytia hemisphaerica)
ATTATTTTTGATTTGTATACTTTAATTTTCCTCGTTTTCTTTCAGCTCAG
TCAGGGAGATCGAGACTAATTTAGTTATTATTCTACTTTTTCTTTAAACG
GAATATTATGCAAATTATTGAGGTGGTCAGGACTGACGGAGTCGCAAATT
CAAAAAGTTTGAAAATTGTATCTGAATTAATGGCTTCAGATCCTACCTAG
GAGATTCACTTCTAGCCCTTCGGGTTTCTATTTCATTGTCCGAGTGTCTA
TTGGGCACGGTCTTCCCAGTAACGAATTCTGTTTGTAGATCAATTTTTCT
CTCTAAATGGTATTCTTTTCTTTCAGTAACGGACTCTATTTACACACTTC
ACTTGGACAATACGACCACCAAAGATCTTGGTCGATACAAATGTCGTGTG
CAATATGAATTTCATATGACCGAATCTGCAGAAGTCGTCATCAAATCATC
CAAGCCAGGTAACCCTTTTATAGAAACAATGAATTATTGTCGTGACACTG
ACGCCTCCATTGAGTTTGTTATATTTGTATGACAAATAAACTTTGCTATT
TCCCATTATCTAAGTTTGTGCCTCCGCTACAGCGGAGTCTTGCTAACTCG
AATTTCTCTTTAACTCAAACAAGTTTTATCGTCCCTTCAGTTAACAATGT
CGTATGAACCAATTTCCATACCTCGAAATGTCCTTAACTCGGACAAATAA
CCTGTGCGTGATCGAGTTATGGAGATTCCCCTGATTTCACATATTTCTTT
ATAAGCTCTTGGTTTTATTCAAATTTGATCACTTTTCATTCGTAAAATTT
TAAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTTTATTT
GGAACCTAAGAGTAACAGGTTAGTTAATCCAAAATTTAATAGAAACATAG
AGCTATTAACCTTGGAGTCAATTACTCAATCCCGTCAAACTAAATCTTCG
ATCGGAGTTTTTCATTTAGAAAGCACTACCCTAATGAAAGGAGCAAAACT
CAATAGCGGTTTAGATACATCGAGAGCGTTAAATCTACTTTCCCATGAGT
ACTTGTTATGTAGCGCTGTTAATACTGTATTAGGTCATATTTTAACACTG
CAATGGCTTCTGCGTGTATCACTTAAAAAAAAACTCCGACCGAAAATGGC
GGATAGAGCTTAATCCATGGTTTATAAAGGTTAGTGGTACCAATTTACAA
CCTTCTCAATATTATTCTCTCAATAGCTAGCCGAAATATTATACTACCAA
TCAAGAACGACAACGACACGTCATCGCATTCCATATTCTGTTCACTACCG
GTGCTGGAGAATCAACCGGTGTTCTGGTTCAAGAATGGCCACCCGCTCCA
CCTGGGTGATCAGAACCTTGAACCCAACAATGGATACATCAACAACATGA
CCACATATGTGTTCAATACTGATTGGGGTTTCAACGGGATTTATGATTGT
TATTCGGGTGACCGACATCTACCTTTCGATGTCATTTATTGTAAGTGTTT
ACAGAAAACTGCTAGCCTCTAACAGAGAGGGTTATTATTTTCTATTGAGT
AATTTGGTCAAGTGAAAGAATTCTGAATATGTCATCCAGTCGTAATATAA
ATTGTACATCGTTAAAAGATACGTCTTTTCGTGTACAGAAATTCTAAAAA
ATTACTTTTCTGCTATATTTCTAATGAATTTGCTAAAAACTCTCACGGTA
AGAAAGATTGAATTACGAGATTGACTTTGATTGGAATTCTTGAAGTTAAA
ACTGTGGGCCGGTGAATAAATCTGCATTTCGTCGTTGTCAAGACAAAAAG
GAAAATCTCAAAATCATTATCTTAGGAAAGTGAGAATTTTTCTATAAGAT
AAACCTTTGACAACGAAATTTGGCGTGTGTGGATGAATCTCTCCTCTACT
CTCCTCTATAAGATGAAAGGGCTTATTTCATTGTCAACGGTTCATCTTAT
AGAAAGATTCTCAATATGCTAAGAGACCTGAAGAGACTCATTTTGAGATT
GGTCCTTCTGCTTTGACAACGACGATTATGAGTTGACTTACGATATCTTT
TCTTTTCTAGCATTCAACTTGACAGCGTTACCGCCTAACGCCACAACTGA
TGGTGTGTCGAGAGCTCCCGACGATGATGGTTCGATCTTCTATTACCTTA
ATCTCAAAACTGTTCCCAGTTAACTATTTGTTTTATGCATTGAAATGGGT
CTCAATAGATCTGACTTTGTTATTTATTGGCCTAACCGCTGTTGACAATG
AACTCAGCAAATTCCTAAAATGCTGAATATAATTAAGCTAGGGAGATGGG
CACCTTACAAAAATTACACGTATATTATGCCCTATTATATGATAAGTATG
TTTTATCACCAAAAAGTGATCTAAAATTGGCTAAAAATTTCATTTTTCAT
AGAAATCCACGACAACCTGACCATCAAGGGATCTCATGTCGTCAACCACC
CTGGCGACAATTTGACGTTGACATGCGACGGTTTAAAAGCCGACAATGTT
GTCGTTTATTGGTTCTTCGGAGAACAGCTTATTTTGATGAGATCTAGTTA
TGAAAATTACACCTGGACAGAATCTGATAATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011344XLOC_011344Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020199-exon-sc0000350-1575043694:22935..23090TCONS_00020199-exon-sc0000350-1575043694:22935..23090Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1575043694:22633..22764TCONS_00020199-exon-sc0000350-1575043694:22633..22764Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1575043694:20501..20764TCONS_00020199-exon-sc0000350-1575043694:20501..20764Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1575043694:19862..19930TCONS_00020199-exon-sc0000350-1575043694:19862..19930Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1575043694:19406..19588TCONS_00020199-exon-sc0000350-1575043694:19406..19588Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1510915933:22935..23090TCONS_00020199-exon-sc0000350-1510915933:22935..23090Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1510915933:22633..22764TCONS_00020199-exon-sc0000350-1510915933:22633..22764Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1510915933:20501..20764TCONS_00020199-exon-sc0000350-1510915933:20501..20764Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1510915933:19862..19930TCONS_00020199-exon-sc0000350-1510915933:19862..19930Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1510915933:19406..19588TCONS_00020199-exon-sc0000350-1510915933:19406..19588Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1491911889:22935..23090TCONS_00020199-exon-sc0000350-1491911889:22935..23090Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1491911889:22633..22764TCONS_00020199-exon-sc0000350-1491911889:22633..22764Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1491911889:20501..20764TCONS_00020199-exon-sc0000350-1491911889:20501..20764Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1491911889:19862..19930TCONS_00020199-exon-sc0000350-1491911889:19862..19930Clytia hemisphaericaexon
TCONS_00020199-exon-sc0000350-1491911889:19406..19588TCONS_00020199-exon-sc0000350-1491911889:19406..19588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000350supercontigsc0000350:19406..23090 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.351765	52.6445	35.7514	27.4643	33.1531	8.41423	2.97715	8.20097	8.9728	12.0923	9.43228	3.85154	9.73018	8.99018	4.91157	7.28026	4.56585	1.13815	1.69472	0	0	31.8043	29.7364	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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