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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020174 ID=TCONS_00020174|Name=TCONS_00020174|organism=Clytia hemisphaerica|type=transcript|length=1667bpRun BLAST on NCBI protein sequence of TCONS_00020174-protein >TCONS_00020174-protein ID=TCONS_00020174-protein|Name=TCONS_00020174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp MSQTTSSNIVAGSNVLSEDQQNVVDDILIKKCSVFITGSAGVGKSFLLKKRun BLAST on NCBI transcript from alignment at sc0000350:367030..377524+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020174 ID=TCONS_00020174|Name=TCONS_00020174|organism=Clytia hemisphaerica|type=transcript|length=10495bp|location=Sequence derived from alignment at sc0000350:367030..377524+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000350:367030..377524+ >TCONS_00020174 ID=TCONS_00020174|Name=TCONS_00020174|organism=Clytia hemisphaerica|type=CDS|length=20622bp|location=Sequence derived from alignment at sc0000350:367030..377524+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020174 vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2) HSP 1 Score: 347.821 bits (891), Expect = 8.069e-111 Identity = 198/431 (45.94%), Postives = 258/431 (59.86%), Query Frame = 2
Query: 239 LSEDQQNVVDDILIKKCSVFITGSAGVGKSFLLKKIIDSLPKKKVYVTASTGVAACNIGGSTLHSFAGIGLGDKPAKEYGDQILYKRYKGEVKDRWERCQVLIIDEISMIDGFLFEKIEEVARIVRQNYAPFGGIQLVLCGDFLQLPPV----KCDRFAFETDAWKNCIHKTVVLDKVFRQKELGFVSLLNRLRVGSYTKLDIEVLQKCNKTLFPNDGIKPTCLFPLRSTCDRVNQTELNKLPGITQTFDAYDFANNEYYKKQLETTARFPKKLVLKVGAQVMLLSNKDVRGGLVNGARGVVINFFDRKNPANEMFDEEEESGCDEVLPVVRFANNTEILINAEQNTILQGGKTMAYRSQIPLQLAWAVSVHKSQGVTLDRVEIDLAKAFEHGQSYVALSRVTSLDGLLLRAFDPKKVTAHPKVLNYYSSL 1519
LSE+Q V+ +L K S+F TGSAG GKS+LLK+I+ SLP TASTGVAAC+IGG+TLH+FAGIG G P Q + + V+ W CQ L+IDEISM++ LF+K+E VAR VRQ PFGGIQL++CGDFLQLPPV + RF F++ +WK C+ T+ L KV+RQ + F+SLL +R+G + LQ DGI T L + N+ L +LPG F+A D +N L+ + L LK+GAQVML+ N V GLVNGARGVV+ F E E G LP VRF +I+A++ T+ G + R Q+PLQLAWA+S+HKSQG+TLD VEI L + F GQ+YVALSR SL GL + FDP V P+VL++Y++L
Sbjct: 207 LSEEQAAVLRAVL-KGQSIFFTGSAGTGKSYLLKRILGSLPPTGTVATASTGVAACHIGGTTLHAFAGIGSGQAPLA----QCVALAQRPGVRQGWLNCQRLVIDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFCFQSKSWKRCVPVTLELTKVWRQADQTFISLLQAVRLGRCSDEVTRQLQATASHKVGRDGIVATRLCTHQDDVALTNERRLQELPGKVHRFEAMD--SNPELASTLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGF------------EAEGRG----LPQVRFLCGVTEVIHADRWTVQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFDPMAVRCDPRVLHFYATL 614 The following BLAST results are available for this feature:
BLAST of TCONS_00020174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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