TCONS_00020174-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020174-protein
Unique NameTCONS_00020174-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020174-protein ID=TCONS_00020174-protein|Name=TCONS_00020174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp
MSQTTSSNIVAGSNVLSEDQQNVVDDILIKKCSVFITGSAGVGKSFLLKK
IIDSLPKKKVYVTASTGVAACNIGGSTLHSFAGIGLGDKPAKEYGDQILY
KRYKGEVKDRWERCQVLIIDEISMIDGFLFEKIEEVARIVRQNYAPFGGI
QLVLCGDFLQLPPVKCDRFAFETDAWKNCIHKTVVLDKVFRQKELGFVSL
LNRLRVGSYTKLDIEVLQKCNKTLFPNDGIKPTCLFPLRSTCDRVNQTEL
NKLPGITQTFDAYDFANNEYYKKQLETTARFPKKLVLKVGAQVMLLSNKD
VRGGLVNGARGVVINFFDRKNPANEMFDEEEESGCDEVLPVVRFANNTEI
LINAEQNTILQGGKTMAYRSQIPLQLAWAVSVHKSQGVTLDRVEIDLAKA
FEHGQSYVALSRVTSLDGLLLRAFDPKKVTAHPKVLNYYSSLDPSFPHCT
KSMGERDLKDFLSQRNDLSNYKRRIALLTSIKQDQSDQNIK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011334XLOC_011334Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020174TCONS_00020174Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0003678 DNA helicase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 5..222
e-value: 1.9E-20
score: 72.6
NoneNo IPR availableCDDcd00009AAAcoord: 33..154
e-value: 3.7853E-4
score: 38.6663
IPR010285DNA helicase Pif1-likePFAMPF05970PIF1coord: 16..316
e-value: 2.6E-51
score: 174.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 15..191
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 369..442
coord: 145..336

Blast
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BLAST of TCONS_00020174-protein vs. Swiss-Prot (Human)
Match: PIF1 (ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 2.702e-113
Identity = 198/431 (45.94%), Postives = 258/431 (59.86%), Query Frame = 0 
Query:   16 LSEDQQNVVDDILIKKCSVFITGSAGVGKSFLLKKIIDSLPKKKVYVTASTGVAACNIGGSTLHSFAGIGLGDKPAKEYGDQILYKRYKGEVKDRWERCQVLIIDEISMIDGFLFEKIEEVARIVRQNYAPFGGIQLVLCGDFLQLPPV----KCDRFAFETDAWKNCIHKTVVLDKVFRQKELGFVSLLNRLRVGSYTKLDIEVLQKCNKTLFPNDGIKPTCLFPLRSTCDRVNQTELNKLPGITQTFDAYDFANNEYYKKQLETTARFPKKLVLKVGAQVMLLSNKDVRGGLVNGARGVVINFFDRKNPANEMFDEEEESGCDEVLPVVRFANNTEILINAEQNTILQGGKTMAYRSQIPLQLAWAVSVHKSQGVTLDRVEIDLAKAFEHGQSYVALSRVTSLDGLLLRAFDPKKVTAHPKVLNYYSSL 442
            LSE+Q  V+  +L K  S+F TGSAG GKS+LLK+I+ SLP      TASTGVAAC+IGG+TLH+FAGIG G  P      Q +    +  V+  W  CQ L+IDEISM++  LF+K+E VAR VRQ   PFGGIQL++CGDFLQLPPV    +  RF F++ +WK C+  T+ L KV+RQ +  F+SLL  +R+G  +      LQ         DGI  T L   +      N+  L +LPG    F+A D  +N      L+      + L LK+GAQVML+ N  V  GLVNGARGVV+ F            E E  G    LP VRF      +I+A++ T+   G  +  R Q+PLQLAWA+S+HKSQG+TLD VEI L + F  GQ+YVALSR  SL GL +  FDP  V   P+VL++Y++L
Sbjct:  207 LSEEQAAVLRAVL-KGQSIFFTGSAGTGKSYLLKRILGSLPPTGTVATASTGVAACHIGGTTLHAFAGIGSGQAPLA----QCVALAQRPGVRQGWLNCQRLVIDEISMVEADLFDKLEAVARAVRQQNKPFGGIQLIICGDFLQLPPVTKGSQPPRFCFQSKSWKRCVPVTLELTKVWRQADQTFISLLQAVRLGRCSDEVTRQLQATASHKVGRDGIVATRLCTHQDDVALTNERRLQELPGKVHRFEAMD--SNPELASTLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVGF------------EAEGRG----LPQVRFLCGVTEVIHADRWTVQATGGQLLSRQQLPLQLAWAMSIHKSQGMTLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFDPMAVRCDPRVLHFYATL 614
The following BLAST results are available for this feature:
BLAST of TCONS_00020174-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIF12.702e-11345.94ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN... [more]
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