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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020167 ID=TCONS_00020167|Name=TCONS_00020167|organism=Clytia hemisphaerica|type=transcript|length=1733bp
taaaatataaacaaagtaTCAGACTGTTGAAAAGTCGAAAGAAAAGTTGA
CTGCTCTTTTCTAGATTTAAGTAGAATCTTTAAACATAGTAAATATATCT
CTTGTTCATATATGTATTGTGATTGAAAgggaaattttttatcttcttat
ttTGCAGACATTTAGAATAGGAAATAGATATGGACAAGGAATCTTGGTGC
ACTGTCGAAAGAATTGCAAGTCAAGATTGGACTCGGGCTGAACGAAAACA
TTGCAAGAATGCATTTGATAGTAAGGTTTTCAAATCAGACTTGGCAGAAA
ATAAAACTGATCGCTTAACAGCTTTTAAACCAGACGATACAGCTCACAGA
GAAAAAAGGCATTTTCCATCAAAATATGAAACTCAATTCAAGATGTAGAC
GAGTCACACCTAAAATATCTTATTATAGaacttgaaaaattatttatttt
gataattatcCTCTGATTagattttgtacattttttaaaggcctttttta
ctgtttttagcTCTTTTTAAGTATACCAATAAGTCCATCATTGCGAATTA
GAATTATCATATTGATCTGCATCAGAAAGCAACCTTTTATTCGAGGTTTA
GGATATAAAGTCAGAAGATGttaattttatagattttttaagATAAGATC
TATTTACATAATAAAGGgtgtttatctttttaaataacAAAGAAGGAATA
TTGTAAAACTATATATCTTAGAAAACGTAGAAAAAACAttggaatatttt
caaatatatttcgCGATAATATTACAAAGTATAACAAATTGCTTTTTATT
TAATCAAATCAAGTTCCCATGTATTGTAGCCAAGAAGCCAACAGtatgaa
aattcttcaaaacaaaaatttactttttctctTAGAGACACCAGTTTGAA
TTCgatattacatgtttttttatgagcAAGTGTCTGCACCTATACCAGGC
TCGCAATGTGATTAGCATTCGATTGttcaatagagccattgtttggGTAC
CAAATAGTGAGCCtacgtatgcttataaacgttatgcttgtAAAAAACAA
GTATTTGAGTACTGAGTAGCAAAATGTTCTGAAAggttgtctttgaaaat
tttgagcgTTGAACCAACCTATATCGTTGACCCTCTGAGAGTGAATAATT
TTTTGTACAGTAAAATGCTTACAATTAAATGTATATTTTAATTAACAGCT
CGGGAAATCCCTGCATGCTGTCACCGAAACCATGACagtaagtaaataaa
aaaagtgtataaatataatttacagaccagtctgtaTTTTACCAATAAAA
CATCTTCCATCTTTTGTCTTCGAAATTAAATTTGCTTTTATATGTCTTTG
TTTAGCTTATGCTTATTTTGTTACCACAGCAGATTTGTTTTTCGttagat
gatttttttttattttacagttCTAACATGATTGTATTATATAGGTTTCC
CGAATTCTACATCTGGTCTGAGAACGCGTGCTCTTCTACCGTTGAGCCAA
ACTACGTATCGAACGCTACTCATGTGGAATAGGAACCATTTTTCTCCATT
ACGTTTGCTTCTCAACTGAAACATAATCCAACACCACCATTAAAGTTTAT
ACACGAGCGTACCGCATGGCTTTATGTATGAAATTGATGACGGCCGAAGC
TGGTTGATCTTGCTCCAGTTCAGCGAACATGTAACATTGATGTTCTGTCT
TCCTTTCATTCTCTACCACAAAGCCGAAACAAC Run BLAST on NCBI transcript from alignment at sc0000350:254029..256220+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020167 ID=TCONS_00020167|Name=TCONS_00020167|organism=Clytia hemisphaerica|type=transcript|length=2192bp|location=Sequence derived from alignment at sc0000350:254029..256220+ (Clytia hemisphaerica)
taaaatataaacaaagtaTCAGACTGTTGAAAAGTCGAAAGAAAAGTTGA
CTGCTCTTTTCTAGATTTAAGTAGAATCTTTAAACATAGTAAATATATCT
CTGTTCATATATGTAANTTTTCTAGATTTAAGTAGAATCTTTAAACATAG
TAAATATATCTCTTGTTCATATATGTATTGTGATTGAAAgggaaattttt
tatcttcttatttTGCAGACATTTAGAATAGGAAATAGATATGGACAAGG
AATCTTGGTGCACTGTCGAAAGAATTGCAAGTCAAGATTGGACTCGGGCT
GAACGAAAACATTGCAAGAATGCATTTGATAGTAAGGTTTTCAAATCAGA
CTTGGCAGAAAATAAAACTGATCGCTTAACAGCTTTTAAACCAGACGATA
CAGCTCACAGAGAAAAAAGGCATTTTCCATCAAAATGTAAGATTTTAAAT
GTTGAAAGAAGGCCTAATATaagagtttaaaaaattttgagtgATGGCGT
ACAAAACATACAGAAAATTTTTGCGATTTGACAAGGCTCCTTCCTGCATG
CTTTTTTATGTAGGCTGGAGAAAGGTgataaaagctttaaaatttgagtt
TGCTGCTTGCTGtgtttttgggatttttttccttttaacgTTGTGCATGA
CTATATGCTATTAAATGGGTACATTGCCAAGCAGTGCCAAGTTATGAGAT
TCAACAATGTTTTTTACATACTTCTTATAGATGAAACTCAATTCAAGATG
TAGACGAGTCACACCTAAAATATCTTATTATAGaacttgaaaaattattt
attttgataattatcCTCTGATTagattttgtacattttttaaaggcctt
ttttactgtttttagcTCTTTTTAAGTATACCAATAAGTCCATCATTGCG
AATTAGAATTATCATATTGATCTGCATCAGAAAGCAACATTTTATTCGAG
GTTGAGGATGTAAAGTCAGAAGACATTCGACCAGATCATNAGTCCATCAT
TGCGAATTAGAATTATCATATTGATCTGCATCAGAAAGCAACCTTTTATT
CGAGGTTTAGGATATAAAGTCAGAAGATGttaattttatagattttttaa
gATAAGATCTATTTACATAATAAAGGgtgtttatctttttaaataacAAA
GAAGGAATATTGTAAAACTATATATCTTAGAAAACGTAGAAAAAACAttg
gaatattttcaaatatatttcgCGATAATATTACAAAGTATAACAAATTG
CTTTTTATTTAATCAAATCAAGTTCCCATGTATTGTAGCCAAGAAGCCAA
CAGtatgaaaattcttcaaaacaaaaatttactttttctctTAGAGACAC
CAGTTTGAATTCgatattacatgtttttttatgagcAAGTGTCTGCACCT
ATACCAGGCTCGCAATGTGATTAGCATTCGATTGttcaatagagccattg
tttggGTACCAAATAGTGAGCCtacgtatgcttataaacgttatgcttgt
AAAAAACAAGTATTTGAGTACTGAGTAGCAAAATGTTCTGAAAggttgtc
tttgaaaattttgagcgTTGAACCAACCTATATCGTTGACCCTCTGAGAG
TGAATAATTTTTTGTACAGTAAAATGCTTACAATTAAATGTATATTTTAA
TTAACAGCTCGGGAAATCCCTGCATGCTGTCACCGAAACCATGACagtaa
gtaaataaaaaaagtgtataaatataatttacagaccagtctgtaTTTTA
CCAATAAAACATCTTCCATCTTTTGTCTTCGAAATTAAATTTGCTTTTAT
ATGTCTTTGTTTAGCTTATGCTTATTTTGTTACCACAGCAGATTTGTTTT
TCGttagatgatttttttttattttacagttCTAACATGATTGTATTATA
TAGGTTTCCCGAATTCTACATCTGGTCTGAGAACGCGTGCTCTTCTACCG
TTGAGCCAAACTACGTATCGAACGCTACTCATGTGGAATAGGAACCATTT
TTCTCCATTACGTTTGCTTCTCAACTGAAACATAATCCAACACCACCATT
AAAGTTTATACACGAGCGTACCGCATGGCTTTATGTATGAAATTGATGAC
GGCCGAAGCTGGTTGATCTTGCTCCAGTTCAGCGAACATGTAACATTGAT
GTTCTGTCTTCCTTTCATTCTCTACCACAAAGCCGAAACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020167-exon-sc0000350-1491911889:254029..254113 | TCONS_00020167-exon-sc0000350-1491911889:254029..254113 | Clytia hemisphaerica | exon |
| TCONS_00020167-exon-sc0000350-1510915933:254029..254113 | TCONS_00020167-exon-sc0000350-1510915933:254029..254113 | Clytia hemisphaerica | exon |
| TCONS_00020167-exon-sc0000350-1575043694:254029..254113 | TCONS_00020167-exon-sc0000350-1575043694:254029..254113 | Clytia hemisphaerica | exon |
| TCONS_00020167-exon-sc0000350-1491911889:254175..254464 | TCONS_00020167-exon-sc0000350-1491911889:254175..254464 | Clytia hemisphaerica | exon |
| TCONS_00020167-exon-sc0000350-1510915933:254175..254464 | TCONS_00020167-exon-sc0000350-1510915933:254175..254464 | Clytia hemisphaerica | exon |
| TCONS_00020167-exon-sc0000350-1575043694:254175..254464 | TCONS_00020167-exon-sc0000350-1575043694:254175..254464 | Clytia hemisphaerica | exon |
| TCONS_00020167-exon-sc0000350-1491911889:254759..254966 | TCONS_00020167-exon-sc0000350-1491911889:254759..254966 | Clytia hemisphaerica | exon |
| TCONS_00020167-exon-sc0000350-1510915933:254759..254966 | TCONS_00020167-exon-sc0000350-1510915933:254759..254966 | Clytia hemisphaerica | exon |
| TCONS_00020167-exon-sc0000350-1575043694:254759..254966 | TCONS_00020167-exon-sc0000350-1575043694:254759..254966 | Clytia hemisphaerica | exon |
| TCONS_00020167-exon-sc0000350-1491911889:255071..256220 | TCONS_00020167-exon-sc0000350-1491911889:255071..256220 | Clytia hemisphaerica | exon |
| TCONS_00020167-exon-sc0000350-1510915933:255071..256220 | TCONS_00020167-exon-sc0000350-1510915933:255071..256220 | Clytia hemisphaerica | exon |
| TCONS_00020167-exon-sc0000350-1575043694:255071..256220 | TCONS_00020167-exon-sc0000350-1575043694:255071..256220 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000350 | supercontig | sc0000350:254029..256220 + |
Blast
The following BLAST results are available for this feature:
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