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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020109 ID=TCONS_00020109|Name=TCONS_00020109|organism=Clytia hemisphaerica|type=transcript|length=4865bpRun BLAST on NCBI transcript from alignment at sc0000349:191164..275460+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020109 ID=TCONS_00020109|Name=TCONS_00020109|organism=Clytia hemisphaerica|type=transcript|length=84297bp|location=Sequence derived from alignment at sc0000349:191164..275460+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020109 vs. Swiss-Prot (Human)
Match: TEP1 (Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 1.054e-42 Identity = 204/811 (25.15%), Postives = 352/811 (43.40%), Query Frame = 1
Query: 100 WWSVLTR*CLYIG*---RAPYTICELNRNIIFIK-----MAEISYADAAKTMPENVEEMWELVE------KTSLK-------ESFEVLPVKNRRGWRTIRIFVSSTFKDFLNEREILVKELFPDLRLWCEERKLRLIECDLKWGVPIGTTGSET-----IQICLGELDRCCEENHVPFFLNLCAERVGWIPTSEELTANLTSHYGWVH----GLSITEMEIVHGALR--KMNPN--ALFMIREADSLEGLPDHIVEAFKESNERSVEKLSMLKTKVAEAFPSNHHFYQVKGNYVKDDDNRENVTFEGLNGDFYQKVFSFFKERIEMLYPLEDSP--EDPIEVQRE--AHLTFMETRSKSVLGRDQQLGE-IQYYIRNDQTYSPLVLVGQSGAGKSSIIARSARDVCDMIDDGQLSGKVFVHFVGATPGSTDLVSFLKRIVAELSPDNKESISDLQGYVQLVC----RLLSK--EEIGP---VYLFIDAINQMDEDKQYYLARWLPCQLAQNIRVVISTIENTDTHQILTKFVPAPKEIACGPLDETSREEIVRNILRDYTKELHP----DQMRLLISKKGSSNPLWLAVACEELRVEAVFETVTSMIEAFPNELIDMEVNLINRLVRGENGDQIKSALLLLEVSRHGXXXXXXXXXXXXKNLHLVGS---TFEEGDEN--EKVKPG-CKKTIPARDWAIIYRNIKQLL------RPCGN--LGDGRLDFYHRSLSKAVRKQFLSGSPGEEKKHVYVHWHRVLADYFEKATDDDRRAE----------ELPYHLEQLSDSARLEKCLIDWNI 2304
+W + CL++G R Y +LN N + + + + A + E+V +M ++ + KT ++ ++ L +++GWR+IR+F+SSTF+D ER++L++ + P L+ ++ L DL+WGV T ET +++CLGE++ + F+ + R G+IP S L + H+ W G S+TEME++ R ++ P+ AL R++ L +PD F +E + ++S LK+ ++ Y + V + G +F Q V I+ LY L+ E P+ + + TF + + R + L + +Q + S ++ GQSG GK++ +A S D +++ VF HF GA P ++ L+R+ L KE + Y LV RLL K E + P L ID +++ + ++ W+P +L + + +V+S + + L + A +A GPL+ ++R +VR L Y K L +QMRLL+ K+ S PL+L + + LR+ ++E V+ + P + + ++++ L + D + AL LEV+R G L LH V S T +G ++ E V G P +A + ++++ LL RP L DG L + K+ PG E H ++A K D D +LPYHL Q + L K L + ++
Sbjct: 801 YWQRVNSKCLFVGILLRRVQYLSTDLNPNDVTLSGCTDAILKFIAEHGASHLLEHVGQMDKIFKIPPPPGKTGVQSLRPLEEDTPSPLAPVSQQGWRSIRLFISSTFRDMHGERDLLLRSVLPALQARAAPHRISLHGIDLRWGV----TEEETRRNRQLEVCLGEVE------NAQLFVGILGSRYGYIPPSYNLPDH--PHFHWAQQYPSGRSVTEMEVMQFLNRNQRLQPSAQALIYFRDSSFLSSVPDAWKSDFVSESEEAARRISELKSYLSRQKGITCRRYPCEWGGVA-----AGRPYVGGLEEFGQLVLQDVWNMIQKLY-LQPGALLEQPVSIPDDDLVQATFQQLQKPPSPARPRLLQDTVQRLMLPHGRLS--LVTGQSGQGKTAFLA-SLVSALQAPDGAKVASLVFFHFSGARPDQGLALTLLRRLCTYLRGQLKEPGALPSTYRSLVWELQQRLLPKSAESLHPGQTQVLIIDGADRLVDQNGQLISDWIPKKLPRCVHLVLSVSSDAGLGETLEQSQGA-HVLALGPLEASARARLVREELALYGKRLEESPFNNQMRLLLVKRESGRPLYLRLVTDHLRLFTLYEQVSERLRTLPATVPLLLQHILSTLEKEHGPDVLPQALTALEVTRSG---------LTVDQLHGVLSVWRTLPKGTKSWEEAVAAGNSGDPYPMGPFACLVQSLRSLLGEGPLERPGARLCLPDGPL--------RTAAKRCYGKRPGLEDTA-----HILIAAQLWKTCDADASGTFRSCPPEALGDLPYHLLQSGNRGLLSKFLTNLHV 1567 The following BLAST results are available for this feature:
BLAST of TCONS_00020109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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