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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020096 ID=TCONS_00020096|Name=TCONS_00020096|organism=Clytia hemisphaerica|type=transcript|length=6334bpRun BLAST on NCBI protein sequence of TCONS_00020096-protein >TCONS_00020096-protein ID=TCONS_00020096-protein|Name=TCONS_00020096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2058bp MATTLMDVHSRPLKRQKLGIPDLYPQSQKQEEDDLSEANVKRGFNYKPAVRun BLAST on NCBI transcript from alignment at sc0000349:39271..67176+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020096 ID=TCONS_00020096|Name=TCONS_00020096|organism=Clytia hemisphaerica|type=transcript|length=27906bp|location=Sequence derived from alignment at sc0000349:39271..67176+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000349:39271..67176+ >TCONS_00020096 ID=TCONS_00020096|Name=TCONS_00020096|organism=Clytia hemisphaerica|type=CDS|length=247080bp|location=Sequence derived from alignment at sc0000349:39271..67176+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020096 vs. Swiss-Prot (Human)
Match: MED12 (Mediator of RNA polymerase II transcription subunit 12 OS=Homo sapiens GN=MED12 PE=1 SV=4) HSP 1 Score: 422.55 bits (1085), Expect = 1.820e-119 Identity = 398/1469 (27.09%), Postives = 663/1469 (45.13%), Query Frame = 1
Query: 1144 FTEFKECQQHASLVTILSGIVQAITLRCPAALIWSITKVNASSNDPNKNQVLGSPLDKLPCPPSELIIGSNEDEADKNDSEEIMNALKEKEMEIRQRSIAVENRWL---CPENQSTKKADENYFLLDFLDQMDFTKCDGKFKSDVIYDLIFKDKNVSDYDEQVAIDKQSILLLCQWATSRKRHGQHRAIVCADVIKKRNKYLLELQSGXXXXX-------XXXXXXXNYP-FQQLLFQFLDEAAPT---PESIDVNQDAQFQSLIIFFGELINSNTFSHDQYLCTLIARNDLSSSVLKKLDFMFPSTDDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXTGKTSSD--HDYQSGEFASEFILGGDDNALPLFSMDFTENSSSSHPSEEDADTAKK---------EHRAGV------HLFYVLHFPHPSINKDSHDNNQRMVLLFGFGGRRQEFLKKLKEIKNELSQCFN------------------GVFTTANGKE-EDLKKNSGKMKEKINAVLIKFTALPVYERHNLSTKFLHQMIGKKHTTIDRYGACSELPTAXXXXXXXXXXXXXFNIQGIITLTESLLVQQDNMEPKIANTKTDV---HIPSKLYLVSAAIRNNLQSFLMDPELISSIFQGLLQAAQ----SSNCSSGQRCALVLLHSMYNTSPVLSERFEKRFASFSLKIESGILSSHKPSNTNLLWEQQFLKEHFEKPGNFPLEFIWESKLTNERPAEIYSFVCNALLAVC-KTTNQQRLYALSSFCCEVASHFSNMCTEFLGIINAFCSSLTTSGLGYEQTTQSVNLKEKSTVQALAFFTSVLVARQIIKLNDLLSEVLYPAL---KVTSKKSTKGLQLVCRILEQIFVLNPFPAPKLKLGQTHPFALDV-----FDAGLLRGEMNKANLSSVLSVLKRLYLQAEKGNSSVDRQKTEDRDNLFSTLFNADSGDSFDSAYSKGKSDNKSPSNSIS----DV-IKRSLQLIINQSWLQDKVLSN--ENKNTIMKAVLDSELKSHQSRHFISLI------LNQETKSSPAVNVSNIQQITNRICMTLDKWSLHNASLELQLLLKMASKEEHQSILTAIGRSILSTLTETSDVGH----------------------RRS---LVGPLISKLSISIQGRILKSASETLEKGKWWIPGGNNKLSAD----------SQSILFALISSCLQNQEENKNMFLGSLQKQLQALVTAQKEDKI--DLFSSQFSGLVDAVRLRLNLVGMLFDNLLKSPSVLGDWAITLFSLLLSGIIPYTENTVLFTNVTDMVVILLQKIHMNEIXXXXXXXXXXXXXXXPLPNNEILRFNLVVRKMRKELSQRPSTEIGTLCEELLPLLTGPCEIICSEPTYSLETLQNINKEKPNKPESSNQPEQIRKRTHVQSINAWDLLEDSKNSGPLNLAMFGAVRVEKRPLRYVEESLRLIHHSHQKRKPLSYF 5202
F++ C QH LV LS I+Q I L CP+AL+W + ++ GSPLD LP PS L + E + ++++ L+E E +I++R AVE RW C E + L+ LD F + D D + + IF D E + D + LLC+WA S KR G+HRA+V A +++KR + + GES + P FQ +L QFLD AP P S ++ +F +L++ F ELI + FSH+ Y CTLI+R DL+ PS D + SS+ K + ++ +SS D + +F+ LFS S PS E D K+ E GV H+ Y HFP P SH+ NQR+V+LFG G +R + +K+I ++ + N G T G++ + ++N + + KF L Y++H ++ + ++ + T G LP + +++L+ S +I G+I LL + +E ++ +D+ + S + A +R+ +++ + ++ +F+GL + S+ SS +RC L L+ +Y + L +F + F+ F K+++ I + +PS +N+ W +F+ + E P + K +E PA YSFVCNAL+ VC + R+ ++ C E+ + ++ E+LG++ A C S G+ +V++ + S +LA F ++L+ARQ + L DL+ P+L + + S G +L CRIL L+ F P+L Q+ V D LL N+ +V +VLK +++ + E + + F+ + + G + S+ DV K L+ I Q W+ ++ L + E+ N + VL S Q++ + LI L+ E +P +Q RI LD+W++ +SLELQL++K E S+L I ++ + ++++ G RS LV PLI+KL S+QG +LK+A E LEKG+ G +++ D SQ +L+ +CL+ Q+E + L SL Q+ +V ++D+ D Q + +A++LRLNLVG +FD + +S +WA+ L +++SG + N LFT V DM+ +L+ +++ +SQ + N+ NL +K++KEL +R S + + +LLPL ++I EP S L + K +S + E ++ T Q I+ WDL E K S PL+ FG VRV++R R E+ L++H+H + +P +Y+
Sbjct: 346 FSDLLMCPQHRPLVFGLSCILQTILLCCPSALVWHYSLTDSRIKT-------GSPLDHLPIAPSNLPM----PEGNSAFTQQVRAKLREIEQQIKERGQAVEVRWSFDKCQEATAGFTIGRVLHTLEVLDSHSFERSDFSNSLDSLCNRIFGLGPSKDGHEISSDDDAVVSLLCEWAVSCKRSGRHRAMVVAKLLEKRQAEIEAERCGESEAADEKGSIASGSLSAPSAPIFQDVLLQFLDTQAPMLTDPRS--ESERVEFFNLVLLFCELIRHDVFSHNMYTCTLISRGDLAFGAPGPRP---PSPFDDPADDPEHKEAEGSSSSKLEDPGLSESMDIDPSSSVLFEDMEKPDFS-------------LFSPTMPCEGKGS-PSPEKPDVEKEVKPPPKEKIEGTLGVLYDQPRHVQYATHFPIPQEESCSHECNQRLVVLFGVGKQRDDARHAIKKITKDILKVLNRKGTAETDQLAPIVPLNPGDLTFLGGEDGQKRRRNRPEAFPTAEDIFAKFQHLSHYDQHQVTAQVSRNVL--EQITSFALGMSYHLPLVQHVQFIFDLMEYSLSISGLIDFAIQLLNELSVVEAELLLKSSDLVGSYTTSLCLCIVAVLRHYHACLILNQDQMAQVFEGLCGVVKHGMNRSDGSSAERCILAYLYDLYTSCSHLKNKFGELFSDFCSKVKNTIYCNVEPSESNMRWAPEFMIDTLENPAAHTFTYTGLGKSLSENPANRYSFVCNALMHVCVGHHDPDRVNDIAILCAELTGYCKSLSAEWLGVLKALCCSSNNGTCGFNDLLCNVDVSDLSFHDSLATFVAILIARQCLLLEDLIRCAAIPSLLNAACSEQDSEPGARLTCRIL-----LHLFKTPQLNPCQSDGNKPTVGIRSSCDRHLLAASQNRIVDGAVFAVLKAVFVLGD----------AELKGSGFTVTGGTEELPEEEGGGGSGGRRQGGRNISVETASLDVYAKYVLRSICQQEWVGERCLKSLCEDSNDLQDPVLSSA----QAQRLMQLICYPHRLLDNEDGENPQ------RQRIKRILQNLDQWTMRQSSLELQLMIKQTPNNEMNSLLENIAKATIEVFQQSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVAPLIAKLPTSVQGHVLKAAGEELEKGQHL--GSSSRKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLTSLYSQVHQIVNNWRDDQYLDDCKPKQL--MHEALKLRLNLVGGMFDTVQRSTQQTTEWAMLLLEIIISGTVDMQSNNELFTTVLDMLSVLINGTLAADMSSISQGS---------MEENKRAYMNL-AKKLQKELGERQSDSLEKV-RQLLPLPKQTRDVITCEPQGS---LIDTKGNKIAGFDSIFKKEGLQVSTK-QKISPWDLFEGLKPSAPLSWGWFGTVRVDRRVARGEEQQRLLLYHTHLRPRPRAYY 1738 HSP 2 Score: 196.052 bits (497), Expect = 8.535e-50 Identity = 107/274 (39.05%), Postives = 164/274 (59.85%), Query Frame = 1
Query: 148 ATTLMDVHSRPLKRQKLGIPDLYPQSQKQEEDDLSEANVKRGFNYKPAV-NNEYGTARDTAFSIHLSKYVNQFNKILYQKQKVNTLQDXXXXXXXX-XXETFWHVTGKSKGQVTKWMQDLASNKPLSQLGKKIPFFNKKEEIPTCLASNNVSLYRATWFLKMINAAYQSSIAESKTKKRQSFDSHSEWTNTFLKFMREQLLKLSEYYGRPYTSLNQRS-------PMEIENATSYWNYAVQLTECLMRQILLDKHEFLAQIIDLIDKQKFNHDE 942
A ++ RPLKR +LG PD+YPQ KQ+ED+L+ NVK+GFN +PAV +E+G+A++ +F+ +K + F+ I+ +K + NTL D ++ K+ FW VT +S+ + W DLA KPL+QL KK+P F+KKEE+ LA V + RA W +KM AY ++I+E+K KKR D EWT K++ EQL K++EYY RP + + P ++E A W+Y +L + + +LD+HEFL +++ +K + DE
Sbjct: 3 AFGILSYEHRPLKRPRLGPPDVYPQDPKQKEDELTALNVKQGFNNQPAVSGDEHGSAKNVSFNP--AKISSNFSSIIAEKLRCNTLPDTGRRKPQVNQKDNFWLVTARSQSAINTWFTDLAGTKPLTQLAKKVPIFSKKEEVFGYLAKYTVPVMRAAWLIKM-TCAYYAAISETKVKKRH-VDPFMEWTQIITKYLWEQLQKMAEYY-RPGPAGSGGCGSTIGPLPHDVEVAIRQWDYTEKLAMFMFQDGMLDRHEFLTWVLECFEKIRPGEDE 271 The following BLAST results are available for this feature:
BLAST of TCONS_00020096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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