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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020078 ID=TCONS_00020078|Name=TCONS_00020078|organism=Clytia hemisphaerica|type=transcript|length=1855bpRun BLAST on NCBI transcript from alignment at sc0000348:289342..291864- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020078 ID=TCONS_00020078|Name=TCONS_00020078|organism=Clytia hemisphaerica|type=transcript|length=2523bp|location=Sequence derived from alignment at sc0000348:289342..291864- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020078 vs. Swiss-Prot (Human)
Match: HERC1 (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 4.436e-31 Identity = 111/365 (30.41%), Postives = 164/365 (44.93%), Query Frame = 1
Query: 430 TWGLSKNGQAGPSTNDKVLVPQNIPIKKQYGQIIDISAGGLFTGALTNKNYLISFGCGKYGRLGCGDENDHTKVISNLISSNSKLAKISCGLWHAAAIDNNGSLYIWGHLKACGTSSNMTQPSLVDLNKNVIGISCGFNYTLAWTIEGVAYSWGSGNNGVLGHGDMAQQKKPKIIE-ALNGHKIVDMSAGYCHCTAICEDGKLFTWGKAAFGSLGNGSTSKSDVLVPQLVTGFQNAKQSSCSMGENHGHTLVVNKSGTVFVTXXXXXXXXXXXXQESHTTFQEIPGESFGGEAIMQVMAGGISSAALSSKGHVFTWGCGSDGRLGHPEAEGHRYLFRSDQPRIVESIQDMNCKKVSASYYHMAAL 1521
WG + + Q T +K+L P+ P + I AG T ++ + + G G YGRLG GD N+ + + + + K+S + GS GH TLA+T EG +SWG G+ G LGHG+ + QK PK+I+ L G +V +SAGY H A+ EDG+L+TWG+ FG LG+G ++ ++ P LV N + SC HT+ ++K G V G LG +++ ++ E+ G I +V AG SS AL+S G V+ WGCG+ G EA R P+++E + VS H AL
Sbjct: 376 VWGSNSSHQLVEGTQEKILQPKLAP---SFSDAQTIEAGQYCTFVISTDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVS---------SSKGSD---GH-------------------------------TLAFTTEGEVFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNI--PTLVKDISNVGEVSC----GSSHTIALSKDGRT-VWSFGGGDNGKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALR-------PKLIEELAATRIVDVSIGDSHCLAL 680 HSP 2 Score: 108.612 bits (270), Expect = 2.984e-24 Identity = 108/414 (26.09%), Postives = 166/414 (40.10%), Query Frame = 1
Query: 433 WGLSKNGQAGPSTNDKVLVPQNIPIKKQYGQIIDISAGGLFTGALTNKNYLISFGCGKYGRLGCGDENDHTKVISNLISSNSKLAKISCGLWHAAAIDNNGSLYIWGHLKACGTSSNMTQPSLVDLNKNVIGISCGFN-YTLAWTIEGVAYSWGSGNNGVLGHGDMAQQKKPKIIEALNGHKIVDMSAGYCHCTAICEDGKLFTWGKAAFGSLGNGSTSKSDVLVPQLVTGFQNAKQSSCSMGENHG---------------------------------------------------HTLVVNKSGTVFVTXXXXXXXXXXXXQESHTTFQEIPGESFGGEAIMQVMAGGISSAALSSKGHVFTWGCGSDGRLGHPEAEGHRYLFRSDQPRIVESIQDMNCKKVSASYYHMAA 1518
WG ++GQ + + V+VP P Q Q+I G T + +++ G G YGRLG G+ +D H + + ++ +TQ + SCG + +++A T G +SWG G+ G LGHG+ +Q++P+ IEAL G ++V MS G+ H + DGKLFT+G +G LG G+TS + P+ VT + + + G NH ++ + K G V+ G L G +H Q+IP G I V G + AL+S G V+ WG S+G+LG GH R +P +V +Q N +++SA H AA
Sbjct: 4002 WGAGRHGQLAEAGRN-VMVPAAAPSFSQAQQVI---CGQNCTFVIQANGTVLACGEGSYGRLGQGNSDD----------------------LHVLTVISALQGFV------------VTQ----------LVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKL--PERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKIDVLCGIGIKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIP--VLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGL----GHTNHVR--EPTLVTGLQGKNVRQISAGRCHSAA 4357 HSP 3 Score: 95.9005 bits (237), Expect = 3.151e-20 Identity = 75/261 (28.74%), Postives = 123/261 (47.13%), Query Frame = 1
Query: 424 LLTWGLSKNGQAGPSTNDKVLVPQNIPIKKQYGQIIDISAGGLFTGALTNKNYLISFGCGKYGRLGCGDENDHTKVISNLISSNSKLAKISCGLWHAAAIDNNGSLYIW----------GHLKACGTSSNMTQPSLVDLNKNVI--GISCGFNYTLAWTIEGVAYSWGSGNNGVLGHGD-MAQQKKPKIIEALNGHKIVDMSAGYCHCTAICEDGKLFTWGKAAFGSLGNGSTSKSDVLVPQLVTGFQNAKQSSCSMGENH 1167
+ +WG G+ G + P+ I Q ++ +SAG + A+T L ++G G +GRLG GD N ++ I L+ S + ++SCG H A+ +G +W GH G ++ + +P +++ + + + G +LA T G Y+WG G LG G A +PK+IE L +IVD+S G HC A+ D +++ WG + G G G+ S + P+ V+G S G +H
Sbjct: 479 VFSWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSN--SRNIPTLVKDISNVGEVSCGSSHTIALSKDGR-TVWSFGGGDNGKLGH----GDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGCG--ACLGCGSSEATALRPKLIEELAATRIVDVSIGDSHCLALSHDNEVYAWGNNSMGQCGQGN-STGPITKPKKVSGLDGIAIQQISAGTSH 729 The following BLAST results are available for this feature:
BLAST of TCONS_00020078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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