TCONS_00020061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020061
Unique NameTCONS_00020061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020061 ID=TCONS_00020061|Name=TCONS_00020061|organism=Clytia hemisphaerica|type=transcript|length=360bp
acatttttcagattgtttgtttgaaTACAAAAATTATGGCAATACTTacc
tgaaaatgaaattatgattgtttatcttttcaattgttttttttttatgt
ttttagaaCAACAGAAAGTTTGTGTCATTTTATTTGCCAAAGTTGATTTT
GGTGGCAGCCATTTGGATTACAGGGTGCACGATCTTATCTTGGCAAGAGT
ATAATGAAATTCAAGACCCATCTTACCAATACAAAGTAGACAGTGGTCAT
TTCCTAgctttaaaggttttcttctttgttttggGAGCTCTTTATGTTGT
TTATTTGATCGTTCTGCTGATCCAAGCTTTTCAAGATCTGAAAAATATGC
CATACTTTGG
Run BLAST on NCBI

transcript from alignment at sc0000348:86341..87487-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020061 ID=TCONS_00020061|Name=TCONS_00020061|organism=Clytia hemisphaerica|type=transcript|length=1147bp|location=Sequence derived from alignment at sc0000348:86341..87487- (Clytia hemisphaerica)
ACATTTTTCAGATTGTTTGTTTGAATACAAAAATTATGGCAATACTTACC
TGAAAATGAAATTATGATTGTTTATCTTTTCAATTGTTTTTTTTTTATGT
TTTTAGAACAACAGAAAGTTTGTGTCATTTTATTTGCCAAAGTTGATTTT
GGTGGCAGCCATTTGGATTACAGGGTGCACGATCTTATCTTGGCAAGAGT
AAGAATAAGTTTTTGTATAAACTTTTATCATACTTATATCTACAATGAAC
AAAGCAATACAGAACTGTTGATGAAGATCAAAACCTACCTTGTATGTTCA
ACAACTGAACCCAATAACTAGCGAAACCAATTCAATCCCAAGAAAAAAGA
TATACGTCAAAATAAATGGTAAAGATCATTGATGGAAATAGTTCAATACA
AATGCTCGAATACTACCACTATCCAAGCCTAATGTAAAAACTGCCTCAGT
GCACATTCATCAACCCAATACACATCTACTTTCTTCGGAAAACCTTTCGA
TTATATCTTTGTTTTTGTGATTTTCCTTAGGTATAATGAAATTCAAGACC
CATCTTACCAATACAAAGTAGACAGTGGTCATTTCCTAGTAAGTCTGTAC
ACTTTTCTTTTTGATAAAGATATTCACAATTTTTAAGCCTTCAGATGTTT
TTAACTTTTTGTGTTTTAAGCCTTAAAATGTTCTTATTTTTACCACTTTG
TGAGCATTTCTGTACCTTTTGTTGAAAAAGTGTTATCTATCCGATCTATC
CCCTAATCTGTGCCATTTGTTAAAAAAGTGGTATCTATCCCCTAAATCTT
TAGAATATTTTAAACTTGTTCTAATATTATGGCCATCGAAGCCTTATGTT
CTTCTAAAGATTACTCTTATAAAAAAGAGTATTCATTAAAATTTCAGCCG
GTGCTCAGTATGATTAAAAATCATTTGTATATAACATGTGTTTGAAATGT
TACGAGTAACATAAAAAGTTTAACATAGATTAAACTTTCTGAAATTACTA
TTTCAGAGATTTAACTTATTGTTTTTTTGTGTTTTTTTTGCAGGCTTTAA
AGGTTTTCTTCTTTGTTTTGGGAGCTCTTTATGTTGTTTATTTGATCGTT
CTGCTGATCCAAGCTTTTCAAGATCTGAAAAATATGCCATACTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011277XLOC_011277Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020061-exon-sc0000348-1575043694:87290..87487TCONS_00020061-exon-sc0000348-1575043694:87290..87487Clytia hemisphaericaexon
TCONS_00020061-exon-sc0000348-1575043694:86900..86957TCONS_00020061-exon-sc0000348-1575043694:86900..86957Clytia hemisphaericaexon
TCONS_00020061-exon-sc0000348-1575043694:86341..86444TCONS_00020061-exon-sc0000348-1575043694:86341..86444Clytia hemisphaericaexon
TCONS_00020061-exon-sc0000348-1510915933:87290..87487TCONS_00020061-exon-sc0000348-1510915933:87290..87487Clytia hemisphaericaexon
TCONS_00020061-exon-sc0000348-1510915933:86900..86957TCONS_00020061-exon-sc0000348-1510915933:86900..86957Clytia hemisphaericaexon
TCONS_00020061-exon-sc0000348-1510915933:86341..86444TCONS_00020061-exon-sc0000348-1510915933:86341..86444Clytia hemisphaericaexon
TCONS_00020061-exon-sc0000348-1491911889:87290..87487TCONS_00020061-exon-sc0000348-1491911889:87290..87487Clytia hemisphaericaexon
TCONS_00020061-exon-sc0000348-1491911889:86900..86957TCONS_00020061-exon-sc0000348-1491911889:86900..86957Clytia hemisphaericaexon
TCONS_00020061-exon-sc0000348-1491911889:86341..86444TCONS_00020061-exon-sc0000348-1491911889:86341..86444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:86341..87487 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.5147	51.3218	22.6121	20.8211	41.8236	36.5549	58.6011	62.2143	47.7155	44.634	56.1769	52.8891	28.7517	26.9379	18.5445	28.4914	21.8708	28.2019	21.4793	18.0335	19.0818	19.6121	21.0125	20.0831	27.7483	32.1941	19.9743	12.7215	13.2997	9.03352
Blast
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BLAST of TCONS_00020061 vs. Swiss-Prot (Human)
Match: TM181 (Transmembrane protein 181 OS=Homo sapiens GN=TMEM181 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.382e-17
Identity = 38/83 (45.78%), Postives = 60/83 (72.29%), Query Frame = 2 
Query:  107 NNRKFVSFYLPKLILVAAIWITGCTILSWQEYNEIQDPSYQYKVDSGHFLALKVFFFVLGAXXXXXXXXXXXQAFQDLKNMPY 355
              RK ++FYLPK  +V  +W+   T+  WQ  NE+ DP YQY+VD+G+F  +KVFF V+ A+Y++YL+ L+++A  +L++MPY
Sbjct:  406 GERKCLTFYLPKFFIVGLLWLASVTLGIWQTVNELHDPMYQYRVDTGNFQGMKVFFMVVAAVYILYLLFLIVRACSELRHMPY 488
The following BLAST results are available for this feature:
BLAST of TCONS_00020061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1812.382e-1745.78Transmembrane protein 181 OS=Homo sapiens GN=TMEM1... [more]
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