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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020058 ID=TCONS_00020058|Name=TCONS_00020058|organism=Clytia hemisphaerica|type=transcript|length=1234bp
aaaatgagtGCACACAGCCTAAAGTCAAACCAAGATTTCTTCCAAtcaga
attcaaaaaaatgataCTTGCACCAATCAAAATGCAGGAGCGATACGAAG
GAGAATTGGAAGGACATTCTAATAAATGATGAACCAAGCAATGAGAGTCG
TACATCTTCATTCTCGACCGAGAAAGTTCTTCAACTGACAACTCTATATA
ATTGAAGATGGCTTTATTGGTCACCTTCGTTTTGATGGCAGCACTTCAAG
GTGTGGTTTTCTCCAAAGTCGTTccaaccttctactcagaagCAGCACCT
ACCTGTGATGACTATTTCTACCAAAATACGGAGCCAGAATTCACCATGCA
ATCCAGTTACCAACGCATCTGCCAAATGAAGTCAAGCATTGAACCAGGGA
AAATCTTCTACGCTACACTGTACGACACCAACCACAAGATACCTGTCTAC
TCAGCTTATACTTTGGTGATTGGTGCGTCTTATGATCGGCCAAGTTGGAT
GGTTGAGCCTCAGCTTGAAAACAAATCTTACGGAGACGATATGGTCTTCT
CCTACTCTGTAAATGACGAGTACACTTTCAAAACACAAGCCTCTGATGAG
GATTACAAGGGTTCCGGGCTAACTAGAGGACATTGTAATCCACATTCGTA
CCACGATGGCGAAGAGCGGATTGCTACTTTCACGTTGACCAATATTGCTC
CTCAGTACAGTGAATTCAACAGTGGATCATGGGCTGCTGCAGAACAAGAA
GCTAAAAAAATCATGGCGGAACACTGCTTCGGAAACGCCAACCAAAAATT
accttatgttaaaaaattCGAAGATGCAACGGCATATTTCATCACGGGAG
GAGTACCTGATGATAAACCGTCCGCCGTTATCGGACGGAATGTGACCATC
CCAAAAATCAGTTTCACCGCCACCTGCTGCTCTGATCCTGAACGTGAGGA
AGAATTCTCTTTCGGATACTACGGTTTCAATGTGGTGGATGCTTCCGCTC
AACACACGCGGGCGGTCACATTGACCGAGCTACAGGATATCTTGAACAAA
GCATGGGGAGGAGATCAAAACATCAGTTTCTTTGAAGGTGGGTGCAATAC
TCAACCTGAAGCCACGCAAGATCACATTGGACGAATGAATAAAAAGCtta
caaaatatttcaacaaacATGGATAAAATTTAGCATTTGAATTCTGATTA
TTATTGTAGCCATCTTATCAAAATTATTCTGCat Run BLAST on NCBI protein sequence of TCONS_00020058-protein >TCONS_00020058-protein ID=TCONS_00020058-protein|Name=TCONS_00020058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MALLVTFVLMAALQGVVFSKVVPTFYSEAAPTCDDYFYQNTEPEFTMQSS
YQRICQMKSSIEPGKIFYATLYDTNHKIPVYSAYTLVIGASYDRPSWMVE
PQLENKSYGDDMVFSYSVNDEYTFKTQASDEDYKGSGLTRGHCNPHSYHD
GEERIATFTLTNIAPQYSEFNSGSWAAAEQEAKKIMAEHCFGNANQKLPY
VKKFEDATAYFITGGVPDDKPSAVIGRNVTIPKISFTATCCSDPEREEEF
SFGYYGFNVVDASAQHTRAVTLTELQDILNKAWGGDQNISFFEGGCNTQP
EATQDHIGRMNKKLTKYFNKHG Run BLAST on NCBI transcript from alignment at sc0000348:74839..76667- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020058 ID=TCONS_00020058|Name=TCONS_00020058|organism=Clytia hemisphaerica|type=transcript|length=1829bp|location=Sequence derived from alignment at sc0000348:74839..76667- (Clytia hemisphaerica)
AAAATGAGTGCACACAGCCTAAAGTCAAACCAAGAGTATTGTAATTTTAT
CGCCCCTTTTTTGTTTCTTCACTTTTGAGATGTCGAGTGCTATCTCAATT
TCCATGCTTTTGGACAATGTTTGATCTGCATCCATAATTATCTGAAGCCT
AGCTAAAAATAATTTACGCACGTGATGACTTTGCATGGTCTCCCATGGTT
GCAATGAGGATCCATTGAATCTTATTTAATGTCTGTAAATTTACTTCTTA
CGTCTAAAGACCATCTTTTTTGTATTTTCAAAGCTTCCACGTTGACTTCT
GAAGACTTATTCATGACAATTCATTAGTTTCTTCCAATCAGAATTCAAAA
AAATGATACTTGCACCAATCAAAATGCAGGAGCGATACGAAGGAGAATTG
GAAGGACATTCTAATAAATGATGAACCAAGCAATGAGAGTCGTACATCTT
CATTCTCGACCGAGAAAGTTCTTCAACTGACAACTCTGTAAGTCTGTCAA
TTGCTTTTTTCTGAAATTTTATTTGAAAAGCAAAATTTTCTCTTTATCGG
CTTCTCATTAGCCACTGTTGAATTGGATTGAAATTTCGTTAGCCTTTTAA
GATGTTTTTCCTCTGTAGCTTTTTAAGATGTTGTTATTCGGCGATTCAGC
ACCACAAATCCACAAAGCCCATCAAAAGTGAGCACGATTAGATGCTGGGA
GCGTTTTTGCACTCATCAGGGTAGGGTATGTTTATCTATTTGTTGAGAAA
ATGCTGTCAGGATAATTTTTCTTGTTTCGTTTTTCTTTAGATATAATTGA
AGATGGCTTTATTGGTCACCTTCGTTTTGATGGCAGCACTTCAAGGTGTG
GTTTTCTCCAAAGTCGTTCCAACCTTCTACTCAGAAGCAGCACCTACCTG
TGATGACTATTTCTACCAAAATACGGAGCCAGAATTCACCATGCAATCCA
GTTACCAACGCATCTGCCAAATGAAGTCAAGCATTGAACCAGGGAAAATC
TTCTACGCTACACTGTACGACACCAACCACAAGATACCTGTCTACTCAGC
TTATACTTTGGTGATTGGTGCGTCTTATGATCGGCCAAGTTGGATGGTTG
AGCCTCAGCTTGAAAACAAATCTTACGGAGACGATATGGTCTTCTCCTAC
TCTGTAAATGACGAGTACACTTTCAAAACACAAGCCTCTGATGAGGATTA
CAAGGGTTCCGGGCTAACTAGAGGACATTGTAATCCACATTCGTACCACG
ATGGCGAAGAGCGGATTGCTACTTTCACGTTGACCAATATTGCTCCTCAG
TACAGTGAATTCAACAGTGGATCATGGGCTGCTGCAGAACAAGAAGCTAA
AAAAATCATGGCGGAACACTGCTTCGGAAACGCCAACCAAAAATTACCTT
ATGTTAAAAAATTCGAAGATGCAACGGCATATTTCATCACGGGAGGAGTA
CCTGATGATAAACCGTCCGCCGTTATCGGACGGAATGTGACCATCCCAAA
AATCAGTTTCACCGCCACCTGCTGCTCTGATCCTGAACGTGAGGAAGAAT
TCTCTTTCGGATACTACGGTTTCAATGTGGTGGATGCTTCCGCTCAACAC
ACGCGGGCGGTCACATTGACCGAGCTACAGGATATCTTGAACAAAGCATG
GGGAGGAGATCAAAACATCAGTTTCTTTGAAGGTGGGTGCAATACTCAAC
CTGAAGCCACGCAAGATCACATTGGACGAATGAATAAAAAGCTTACAAAA
TATTTCAACAAACATGGATAAAATTTAGCATTTGAATTCTGATTATTATT
GTAGCCATCTTATCAAAATTATTCTGCAT Coding sequence (CDS) from alignment at sc0000348:74839..76667- >TCONS_00020058 ID=TCONS_00020058|Name=TCONS_00020058|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at sc0000348:74839..76667- (Clytia hemisphaerica)
ATGGCTTTATTGGTCACCTTCGTTTTGATGGCAGCACTTCAAGGTGTGGT
TTTCTCCAAAGTCGTTCCAACCTTCTACTCAGAAGCAGCACCTACCTGTG
ATGACTATTTCTACCAAAATACGGAGCCAGAATTCACCATGCAATCCAGT
TACCAACGCATCTGCCAAATGAAGTCAAGCATTGAACCAGGGAAAATCTT
CTACGCTACACTGTACGACACCAACCACAAGATACCTGTCTACTCAGCTT
ATACTTTGGTGATTGGTGCGTCTTATGATCGGCCAAGTTGGATGGTTGAG
CCTCAGCTTGAAAACAAATCTTACGGAGACGATATGGTCTTCTCCTACTC
TGTAAATGACGAGTACACTTTCAAAACACAAGCCTCTGATGAGGATTACA
AGGGTTCCGGGCTAACTAGAGGACATTGTAATCCACATTCGTACCACGAT
GGCGAAGAGCGGATTGCTACTTTCACGTTGACCAATATTGCTCCTCAGTA
CAGTGAATTCAACAGTGGATCATGGGCTGCTGCAGAACAAGAAGCTAAAA
AAATCATGGCGGAACACTGCTTCGGAAACGCCAACCAAAAATTACCTTAT
GTTAAAAAATTCGAAGATGCAACGGCATATTTCATCACGGGAGGAGTACC
TGATGATAAACCGTCCGCCGTTATCGGACGGAATGTGACCATCCCAAAAA
TCAGTTTCACCGCCACCTGCTGCTCTGATCCTGAACGTGAGGAAGAATTC
TCTTTCGGATACTACGGTTTCAATGTGGTGGATGCTTCCGCTCAACACAC
GCGGGCGGTCACATTGACCGAGCTACAGGATATCTTGAACAAAGCATGGG
GAGGAGATCAAAACATCAGTTTCTTTGAAGGTGGGTGCAATACTCAACCT
GAAGCCACGCAAGATCACATTGGACGAATGAATAAAAAGCTTACAAAATA
TTTCAACAAACATGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020058-exon-sc0000348-1575043694:76633..76667 | TCONS_00020058-exon-sc0000348-1575043694:76633..76667 | Clytia hemisphaerica | exon |
| TCONS_00020058-exon-sc0000348-1575043694:76181..76340 | TCONS_00020058-exon-sc0000348-1575043694:76181..76340 | Clytia hemisphaerica | exon |
| TCONS_00020058-exon-sc0000348-1575043694:74839..75877 | TCONS_00020058-exon-sc0000348-1575043694:74839..75877 | Clytia hemisphaerica | exon |
| TCONS_00020058-exon-sc0000348-1510915933:76633..76667 | TCONS_00020058-exon-sc0000348-1510915933:76633..76667 | Clytia hemisphaerica | exon |
| TCONS_00020058-exon-sc0000348-1510915933:76181..76340 | TCONS_00020058-exon-sc0000348-1510915933:76181..76340 | Clytia hemisphaerica | exon |
| TCONS_00020058-exon-sc0000348-1510915933:74839..75877 | TCONS_00020058-exon-sc0000348-1510915933:74839..75877 | Clytia hemisphaerica | exon |
| TCONS_00020058-exon-sc0000348-1491911889:76633..76667 | TCONS_00020058-exon-sc0000348-1491911889:76633..76667 | Clytia hemisphaerica | exon |
| TCONS_00020058-exon-sc0000348-1491911889:76181..76340 | TCONS_00020058-exon-sc0000348-1491911889:76181..76340 | Clytia hemisphaerica | exon |
| TCONS_00020058-exon-sc0000348-1491911889:74839..75877 | TCONS_00020058-exon-sc0000348-1491911889:74839..75877 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:74839..76667 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020821 | Extracellular_endonuc_su_A |
| IPR001604 | DNA/RNA_non-sp_Endonuclease |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0003676 | nucleic acid binding |
| GO:0016787 | hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016787 |
hydrolase activity |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00020058 vs. Swiss-Prot (Human)
Match: ENDD1 (Endonuclease domain-containing 1 protein OS=Homo sapiens GN=ENDOD1 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 2.529e-16 Identity = 64/218 (29.36%), Postives = 95/218 (43.58%), Query Frame = 1
Query: 304 CDDYFYQNTEPEFTMQSSYQRICQMKSSIEPGKIFYATLYDTNHKIPVYSAYTL---VIGASYDRPSWMVEPQLE--NKSYGDDMVFSYSVNDEYTFKT-QASDEDYKGSGLTRGHCNPHSYHDGEERIATFTLTNIAPQYSEFNSGSWAAAEQEAKKIMAEHCFGNANQKLPYVKKFEDATAYFITGGVPDDKPSAVIGRNVTIPKISFTATCCSDP 939
CD +FY T P S+ +ICQ E +ATLY T +IPVYSA+ G + R W+VEPQ++ N + + + + ++ + + QA + DY S RG P S + ++ATFTLTN AP F + + + C ED Y +TG VP D + V +P+ + A CC+ P
Sbjct: 34 CDKFFYAGTPPAGLAADSHVKICQRAEGAER----FATLYSTRDRIPVYSAFRAPRPAPGGAEQR--WLVEPQIDDPNSNLEEAINEAEAITSVNSLGSKQALNTDYLDSDYQRGQLYPFSLSS-DVQVATFTLTNSAPMTQSFQERWYVNLHSLMDRALTPQCGSG-----------ED--LYILTGTVPSDYR---VKDKVAVPEFVWLAACCAVP 228
The following BLAST results are available for this feature:
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