TCONS_00020043 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020043
Unique NameTCONS_00020043
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020043 ID=TCONS_00020043|Name=TCONS_00020043|organism=Clytia hemisphaerica|type=transcript|length=351bp
AAAGGGTTGAAAAGCATGCCCATTTTGTAGAAGTTCATTTTTCATGAGAA
ATCATGACCTCACACACTTTTCACACAATTAATTTGTGGGCAAACAAACA
CTGATGCTTTTAACTCAATATGATATTTAGTTGACTGAAAACACAGTTTA
ATTGGTGTCTTTTCTGATGTCATGTTATAGGAAAGAATTGTGATTTTCCA
AGCATAAACATAACATAATTTGCTTATCATTTTCCAGGAATGCATAATTT
GAGGAATGAAAATGTGNTTAGtcacaaaacaaataaaaatattcaacata
CAATGCATCAGCACCCAAGATACTTTGATAATATTCTGAGTGACCAGGTA
A
Run BLAST on NCBI

transcript from alignment at sc0000348:206090..206440+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020043 ID=TCONS_00020043|Name=TCONS_00020043|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at sc0000348:206090..206440+ (Clytia hemisphaerica)
AAAGGGTTGAAAAGCATGCCCATTTTGTAGAAGTTCATTTTTCATGAGAA
ATCATGACCTCACACACTTTTCACACAATTAATTTGTGGGCAAACAAACA
CTGATGCTTTTAACTCAATATGATATTTAGTTGACTGAAAACACAGTTTA
ATTGGTGTCTTTTCTGATGTCATGTTATAGGAAAGAATTGTGATTTTCCA
AGCATAAACATAACATAATTTGCTTATCATTTTCCAGGAATGCATAATTT
GAGGAATGAAAATGTGNTTAGtcacaaaacaaataaaaatattcaacata
CAATGCATCAGCACCCAAGATACTTTGATAATATTCTGAGTGACCAGGTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011265XLOC_011265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020043-exon-sc0000348-1491911889:206090..206440TCONS_00020043-exon-sc0000348-1491911889:206090..206440Clytia hemisphaericaexon
TCONS_00020043-exon-sc0000348-1510915933:206090..206440TCONS_00020043-exon-sc0000348-1510915933:206090..206440Clytia hemisphaericaexon
TCONS_00020043-exon-sc0000348-1575043694:206090..206440TCONS_00020043-exon-sc0000348-1575043694:206090..206440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000348supercontigsc0000348:206090..206440 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.509194	0.754146	0	0.850949	0	0	0	1.13637	0	0	1.0125	0.665576	0.332325	0	0.59049	0.163351	0	0.220378	0	0	0.966249	0.353477	1.20405	0.542265	0	0.830341	0.342584	0.805578	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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