|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020042 ID=TCONS_00020042|Name=TCONS_00020042|organism=Clytia hemisphaerica|type=transcript|length=836bp
CTTCTTCTTGGGCATACTGGAATTTATGTGGTTGCTGCATTGATTTATGA
AGCACTAGGTGCTGGCCATGGCTTATCCTCGATCCTGCTAATGTTATTAA
ACTTTCCTGTATGCTTTTCTACAAAACCAGACGTGGAAGAACTTATTAAA
AAATCAGTTGATTATCTACTTCAATTTGAAGACCAGGGAGGAAATTATCC
TCCAACCCCAGGAGAAACTCGGGATGATTGGAATGAGTTGGTCCACTGGT
GTCACGGTGGCCCTGGCAATGTTTATCTCTTCACCAAAGCTTATATCGTC
TGGAAAGAGGAAAAATACTTGCAAGCTGTTTTGCGCATTGGGGAGCTTGT
ATGGAAGAAAGGGCTTTTGAAGAAAGGCCCAGGAATTTGTCACGGTATAG
CAGGAAATGGTTACGTCTTCCTTCTACTCTACCATTTAACAAGTGATGAA
AAGCAGTTGAACAGAGCACGTCAATTTGCAGCTTTTATGCAGACTGAAGA
GTTCAAAGCAATTTCACGAGTTCCTGACGCGCCTTACAGTTTGTTCGAAG
GCATTGCTGGCACTTCTTGTTTCCTTTCTGATCTTGTCAACCCTGATCCT
AATTCAGGAGGGTTCCCTTTTATGGATGTTTTTTAGAGATGTATGATGAT
GATATTTATTTTGTATATATTATTCTGTTGCTTTACTTAGTTAATCCTaa
atttttgtatgatttttatgatTGAAATTTAGTTTTATTAATAATGGTAG
ATGATTTATAACTAGGGTTTtgtatattttacttttttaaagtACGGTAT
GATGCACAGCACAATAACTTTCAAACGTGTTCTCTA Run BLAST on NCBI transcript from alignment at sc0000348:205973..207822+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020042 ID=TCONS_00020042|Name=TCONS_00020042|organism=Clytia hemisphaerica|type=transcript|length=1850bp|location=Sequence derived from alignment at sc0000348:205973..207822+ (Clytia hemisphaerica)
CTTCTTCTTGGGCATACTGGAATTTATGTGGTTGCTGCATTGATTTATGA
AGCACTAGGTGAGTTTATCCACAGGAAAGtttcagaatatttttttttca
tatttacttTGACAGGTAAAGGGTTGAAAAGCATGCCCATTTTGTAGAAG
TTCATTTTTCATGAGAAATCATGACCTCACACACTTTTCACACAATTAAT
TTGTGGGCAAACAAACACTGATGCTTTTAACTCAATATGATATTTAGTTG
ACTGAAAACACAGTTTAATTGGTGTCTTTTCTGATGTCATGTTATAGGAA
AGAATTGTGATTTTCCAAGCATAAACATAACATAATTTGCTTATCATTTT
CCAGGAATGCATAATTTGAGGAATGAAAATGTGNTTAGtcacaaaacaaa
taaaaatattcaacataCAATGCATCAGCACCCAAGATACTTTGATAATA
TTCTGAGTGACCAGGTAAGTAAGATGTTTCACATTTTAAAAAGGCAAGGT
AGATCAGGGTAGGGTCTGTTGTTCACAAAAAAACATTACTATTCTGCCTA
AATAGGCTAACAGAAGTTTCCTTTCAATTTTGTTTCAATCAGATTTGATA
AGTTATTGGAAATTTATGGTTAAGATAGATGTGTTGGTCAAATATTGAAG
GCANAGAACAATAGTCTCAAATGATACTGTACTTCCGCTGTGCAATACAA
TCATAGAGTCTGGTAAACGTACAGCTCAACTTCATAACAGTGAATGCCCA
CTGATGTTTACATATTACAACACTGACTATTTAGGtaatgaacaaaaaat
agcaatgacagttttttttgttcgaactttgtaatttgaaatgtatGATC
AATcttattttcttaatttcataatttgtatattatcaaaatcaacttat
attttctATAGGTGCTGGCCATGGCTTATCCTCGATCCTGCTAATGTTAT
TAAACTTTCCTGTATGCTTTTCTACAAAACCAGACGTGGAAGAACTTATT
AAAAAATCAGTTGATTATCTACTTCAATTTGAAGACCAGGGAGGAAATTA
TCCTCCAACCCCAGGAGAAACTCGGGATGATTGGAATGAGTTGGTCCACT
GGTGTCACGGTGGCCCTGGCAATGTTTATCTCTTCACCAAAGCTTATATC
GTCTGGAAAGAGGAAAAATACTTGCAAGCTGTTTTGCGCATTGGGGAGCT
TGTATGGAAGAAAGGGCTTTTGAAGAAAGGCCCAGGAATTTGTCACGGTA
TAGCAGGTAAAACACTTTTCTTCTCCTAAGGGTGTCCAGACAGGCCTAGA
GGTGGCATCTTGCCTGTCTGGAGGCCTGTCCAGACGGACTTGTCTGATTT
TATAGATATGCTctatttgatttttcaaaaccttATGATAAAGACTAGTC
TTTGTTTTTATCCTTAGGAAATGGTTACGTCTTCCTTCTACTCTACCATT
TAACAAGTGATGAAAAGCAGTTGAACAGAGCACGTCAATTTGCAGCTTTT
ATGCAGACTGAAGAGTTCAAAGCAATTTCACGAGTTCCTGACGCGCCTTA
CAGTTTGTTCGAAGGCATTGCTGGCACTTCTTGTTTCCTTTCTGATCTTG
TCAACCCTGATCCTAATTCAGGAGGGTTCCCTTTTATGGATGTTTTTTAG
AGATGTATGATGATGATATTTATTTTGTATATATTATTCTGTTGCTTTAC
TTAGTTAATCCTaaatttttgtatgatttttatgatTGAAATTTAGTTTT
ATTAATAATGGTAGATGATTTATAACTAGGGTTTtgtatattttactttt
ttaaagtACGGTATGATGCACAGCACAATAACTTTCAAACGTGTTCTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020042-exon-sc0000348-1491911889:205973..206030 | TCONS_00020042-exon-sc0000348-1491911889:205973..206030 | Clytia hemisphaerica | exon |
| TCONS_00020042-exon-sc0000348-1510915933:205973..206030 | TCONS_00020042-exon-sc0000348-1510915933:205973..206030 | Clytia hemisphaerica | exon |
| TCONS_00020042-exon-sc0000348-1575043694:205973..206030 | TCONS_00020042-exon-sc0000348-1575043694:205973..206030 | Clytia hemisphaerica | exon |
| TCONS_00020042-exon-sc0000348-1491911889:206884..207228 | TCONS_00020042-exon-sc0000348-1491911889:206884..207228 | Clytia hemisphaerica | exon |
| TCONS_00020042-exon-sc0000348-1510915933:206884..207228 | TCONS_00020042-exon-sc0000348-1510915933:206884..207228 | Clytia hemisphaerica | exon |
| TCONS_00020042-exon-sc0000348-1575043694:206884..207228 | TCONS_00020042-exon-sc0000348-1575043694:206884..207228 | Clytia hemisphaerica | exon |
| TCONS_00020042-exon-sc0000348-1491911889:207390..207822 | TCONS_00020042-exon-sc0000348-1491911889:207390..207822 | Clytia hemisphaerica | exon |
| TCONS_00020042-exon-sc0000348-1510915933:207390..207822 | TCONS_00020042-exon-sc0000348-1510915933:207390..207822 | Clytia hemisphaerica | exon |
| TCONS_00020042-exon-sc0000348-1575043694:207390..207822 | TCONS_00020042-exon-sc0000348-1575043694:207390..207822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:205973..207822 + |
Blast
BLAST of TCONS_00020042 vs. Swiss-Prot (Human)
Match: LANC3 (LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2) HSP 1 Score: 219.935 bits (559), Expect = 6.422e-68 Identity = 112/195 (57.44%), Postives = 140/195 (71.79%), Query Frame = 1
Query: 49 EALGAGHGLSSILLMLLNFPVCFSTKPDVEELIKKSVDYLLQFEDQGGNYPPTPGETRDDWNELVHWCHGGPGNVYLFTKAYIVWKEEKYLQAVLRIGELVWKKGLLKKGPGICHGIAGNGYVFLLLYHLTSDEKQLNRARQFAAFMQTEEFKAISRVPDAPYSLFEGIAGTSCFLSDLVNPDPNSGGFPFMDVF 633
E LGA HGLSSIL MLL++ KP EL+ +SVD+L++ ++Q N+PP GET + NELVHWCHG PG YLF KAY+V K+ +YL +R GEL W+KGLLKKGPGICHG+AG+ YVFLLLY LT + K + RA++FA F+ TEEFKA SRV ++ YSL+EG +GT CFL DL+ PN FP VF
Sbjct: 230 EYLGAAHGLSSILQMLLSYHE--HLKPSDRELVWQSVDFLME-QEQNCNWPPELGETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAQFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQ--PNQAEFPLFSVF 419
The following BLAST results are available for this feature:
|
