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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020041 ID=TCONS_00020041|Name=TCONS_00020041|organism=Clytia hemisphaerica|type=transcript|length=3218bp tctatcgattaactaaaatcgattcactcaaaaactgcaggagattcgaa gggcaaNCTTCTTCTTGGGCATACTGGAATTTATGTGGTTGCTGCATTGA TTTATGAAGCACTAGGAATGCATAATTTGAGGAATGAAAATGTGNTTAGt cacaaaacaaataaaaatattcaacataCAATGCATCAGCACCCAAGATA CTTTGATAATATTCTGAGTGACCAGGTAAGTAAGATGTTTCACATTTTAA AAAGGCAAGGTAGATCAGGGTAGGGTCTGTTGTTCACAAAAAAACATTAC TATTCTGCCTAAATAGGCTAACAGAAGTTTCCTTTCAATTTTGTTTCAAT CAGATTTGATAAGTTATTGGAAATTTATGGTTAAGATAGATGTGTTGGTC AAATATTGAAGGCANAGAACAATAGTCTCAAATGATACTGTACTTCCGCT GTGCAATACAATCATAGAGTCTGGTAAACGTACAGCTCAACTTCATAACA GTGAATGCCCACTGATGTTTACATATTACAACACTGACTATTTAGGTGCT GGCCATGGCTTATCCTCGATCCTGCTAATGTTATTAAACTTTCCTGTATG CTTTTCTACAAAACCAGACGTGGAAGAACTTATTAAAAAATCAGTTGATT ATCTACTTCAATTTGAAGACCAGGGAGGAAATTATCCTCCAACCCCAGGA GAAACTCGGGATGATTGGAATGAGTTGGTCCACTGGTGTCACGGTGGCCC TGGCAATGTTTATCTCTTCACCAAAGCTTATATCGTCTGGAAAGAGGAAA AATACTTGCAAGCTGTTTTGCGCATTGGGGAGCTTGTATGGAAGAAAGGG CTTTTGAAGAAAGGCCCAGGAATTTGTCACGGTATAGCAGGAAATGGTTA CGTCTTCCTTCTACTCTACCATTTAACAAGTGATGAAAAGCAGTTGAACA GAGCACGTCAATTTGCAGCTTTTATGCAGACTGAAGAGTTCAAAGCAATT TCACGAGTTCCTGACGCGCCTTACAGTTTGTTCGAAGGCATTGCTGGCAC TTCTTGTTTCCTTTCTGATCTTGTCAACCCTGATCCTAATTCAGGAGGGT TCCCTTTTATGGATGTTTTTTAGAGATGTATGATGATGATATTTATTTTG TATATATTATTCTGTTGCTTTACTTAGTTAATCCTaaatttttgtatgat ttttatgatTGAAATTTAGTTTTATTAATAATGGTAGATGATTTATAACT AGGGTTTtgtatattttacttttttaaagtACGGTATGATGCACAGCACA ATAACTTTCAAACGTGTTCTCTATTCAAAGTAATCCATCTCCAATCTTTC AGATCTTTGTATATATTGGTATATTTCGATCTTAAGTTTATTTTGACGAA GGTGTTGTAGTTAGTGTTATCAAATCTTAACAAATTCATTCTCGTTTTAG ACAACTGTAAACTATGATGTAGTAattgaaaagaacaaaaaggaAATAAT TATGCTTACCCAATTGCGTCAACAACTTGCTAAAAATAACTTGAGcTCAA TTGTAGGTGCAGCTAGGATTAAAACTAAACCACCCAACATTGTGATCAAA ACTGATTGCGTCCAGAGTTACGAGAAAGCTTTATCAGTTCTCAATTCTGT GATTGACAAAGAACGTTACacacttcaccatgtagtatcGAAAAACTTTC TCCAAGGTTCTTGGAAAGGTTCATGTTCACTGCTTCTCTACAATGTAGTT GATGAACTCTGTGAACAATCAAAGCCACTGATCCAGTCTTACGTACAAGA TTGCGATGGCAAAGTGATCATTTATTCTGACAACACTGAATCAAACACCT CATTACAAGACATCAAGGAATTTACTAATGataTAAACAAGCAGTATCCT CATCAAATGGTCATGTTTGAAGAATGTATTGACTCCATAAAGAAATAtga tttggtttttgttttgaagttgATGGGGATGAGTTGTACAGAAGAGACAC AGCCACCCTCTGGCGAGCATCTCCTCACTAATGCATATTTACTGTCCAGT AAAAAGgttgaagatattttcgcATTAAACGATGAAGGAAGTGTAAAGGG GAAAGATATAACTTTGAAATTCTCGCCACAGAATGGTTCCCATAAAACTA CCAATGATGAATTTGTTGTTATAACAAACACGtctaaaaatgatataaaa tcaTCATTTGATGTTGAACTTTACCAATCCAAGCTGAAAACTGTAAAATA CGGCCAAGATATTATAgtcactgaagtgattaactcAACACACACCATTT TCACTGGAGTTAATGTCAATTCGATACAATCTGATGGTTTAGTTGTTCAT GCCAGGAGACAGTTAAAAGGGAAAGGGCGAACCGGCAACCAATGGTTATC ACCTCTAGGTTgtatgatgttttcaatgcaatttGATATCCCAATGAATA GTCCTCTTGGCCGAAGTCTTTCCATGATTCAACACTTAGTTATTGTAGCA TTTGTTAAATCGATCAAGGAACGTGGCGATGGTTATAAGGATTTAGCACT TGGCATCAAATGGCCAAATGATATTTACATTGATGGTAAGATTAAGATTG GAGGTATTATAGTGAATACTTGTTTATGGCAGAATGATTTTAAAGTGACC GTTGGATTAGGGGTGAATATAAGTAATGACAAGCCTACTGATTGCTTGAA TAGCTTGATACGTCATTATAACCAAACGAAAGGTGCACAACTGAAGGAGT TGGTGATTGAAGATGTTTTGGCAGCAACTTTGAATGAAATTGAGAATTTG GTTTATGTTTTCCAAAATGAAGGAGCACAAAGGTTTAAAGATGAATATTA TCAATATTGGTTGCACAGtGGAAGGAAAGTGACATTGGAAAGTTACAACA TGAGACAAGCTGAAGTGGTTGGAATTGATGATTATGGTTATCTGGTAGTC AAGATACTGCAGAATGGAGAAATAGTGACGTTACAACCAGATGGAAATAG TTTTGATATGATGAAAAATATGATCAAAATCAAATCGTGACTCACTATCT GAATTCTTcctcaatttttttgttaacccaaatattttaaatgaattttc taATATTagaattattttgtaaatttttaataattcaaAACACCAAACAA AATTTTACAGCTTATCGTTGTTGTTTTTTGCAACATTGCTGTCGTGGGAC GAgaattttataaagaaa Run BLAST on NCBI protein sequence of TCONS_00020041-protein >TCONS_00020041-protein ID=TCONS_00020041-protein|Name=TCONS_00020041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp
MLTQLRQQLAKNNLSSIVGAARIKTKPPNIVIKTDCVQSYEKALSVLNSV IDKERYTLHHVVSKNFLQGSWKGSCSLLLYNVVDELCEQSKPLIQSYVQD CDGKVIIYSDNTESNTSLQDIKEFTNDINKQYPHQMVMFEECIDSIKKYD LVFVLKLMGMSCTEETQPPSGEHLLTNAYLLSSKKVEDIFALNDEGSVKG KDITLKFSPQNGSHKTTNDEFVVITNTSKNDIKSSFDVELYQSKLKTVKY GQDIIVTEVINSTHTIFTGVNVNSIQSDGLVVHARRQLKGKGRTGNQWLS PLGCMMFSMQFDIPMNSPLGRSLSMIQHLVIVAFVKSIKERGDGYKDLAL GIKWPNDIYIDGKIKIGGIIVNTCLWQNDFKVTVGLGVNISNDKPTDCLN SLIRHYNQTKGAQLKELVIEDVLAATLNEIENLVYVFQNEGAQRFKDEYY QYWLHSGRKVTLESYNMRQAEVVGIDDYGYLVVKILQNGEIVTLQPDGNS FDMMKNMIKIKS Run BLAST on NCBI transcript from alignment at sc0000348:205916..214385+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020041 ID=TCONS_00020041|Name=TCONS_00020041|organism=Clytia hemisphaerica|type=transcript|length=8470bp|location=Sequence derived from alignment at sc0000348:205916..214385+ (Clytia hemisphaerica) tctatcgattaactaaaatcgattcactcaaaaactgcaggagattcgaa
gggcaaNCTTCTTCTTGGGCATACTGGAATTTATGTGGTTGCTGCATTGA
TTTATGAAGCACTAGGTGAGTTTATCCACAGGAAAGtttcagaatatttt
tttttcatatttacttTGACAGGTAAAGGGTTGAAAAGCATGCCCATTTT
GTAGAAGTTCATTTTTCATGAGAAATCATGACCTCACACACTTTTCACAC
AATTAATTTGTGGGCAAACAAACACTGATGCTTTTAACTCAATATGATAT
TTAGTTGACTGAAAACACAGTTTAATTGGTGTCTTTTCTGATGTCATGTT
ATAGGAAAGAATTGTGATTTTCCAAGCATAAACATAACATAATTTGCTTA
TCATTTTCCAGGAATGCATAATTTGAGGAATGAAAATGTGNTTAGtcaca
aaacaaataaaaatattcaacataCAATGCATCAGCACCCAAGATACTTT
GATAATATTCTGAGTGACCAGGTAAGTAAGATGTTTCACATTTTAAAAAG
GCAAGGTAGATCAGGGTAGGGTCTGTTGTTCACAAAAAAACATTACTATT
CTGCCTAAATAGGCTAACAGAAGTTTCCTTTCAATTTTGTTTCAATCAGA
TTTGATAAGTTATTGGAAATTTATGGTTAAGATAGATGTGTTGGTCAAAT
ATTGAAGGCANAGAACAATAGTCTCAAATGATACTGTACTTCCGCTGTGC
AATACAATCATAGAGTCTGGTAAACGTACAGCTCAACTTCATAACAGTGA
ATGCCCACTGATGTTTACATATTACAACACTGACTATTTAGGtaatgaac
aaaaaatagcaatgacagttttttttgttcgaactttgtaatttgaaatg
tatGATCAATcttattttcttaatttcataatttgtatattatcaaaatc
aacttatattttctATAGGTGCTGGCCATGGCTTATCCTCGATCCTGCTA
ATGTTATTAAACTTTCCTGTATGCTTTTCTACAAAACCAGACGTGGAAGA
ACTTATTAAAAAATCAGTTGATTATCTACTTCAATTTGAAGACCAGGGAG
GAAATTATCCTCCAACCCCAGGAGAAACTCGGGATGATTGGAATGAGTTG
GTCCACTGGTGTCACGGTGGCCCTGGCAATGTTTATCTCTTCACCAAAGC
TTATATCGTCTGGAAAGAGGAAAAATACTTGCAAGCTGTTTTGCGCATTG
GGGAGCTTGTATGGAAGAAAGGGCTTTTGAAGAAAGGCCCAGGAATTTGT
CACGGTATAGCAGGTAAAACACTTTTCTTCTCCTAAGGGTGTCCAGACAG
GCCTAGAGGTGGCATCTTGCCTGTCTGGAGGCCTGTCCAGACGGACTTGT
CTGATTTTATAGATATGCTctatttgatttttcaaaaccttATGATAAAG
ACTAGTCTTTGTTTTTATCCTTAGGAAATGGTTACGTCTTCCTTCTACTC
TACCATTTAACAAGTGATGAAAAGCAGTTGAACAGAGCACGTCAATTTGC
AGCTTTTATGCAGACTGAAGAGTTCAAAGCAATTTCACGAGTTCCTGACG
CGCCTTACAGTTTGTTCGAAGGCATTGCTGGCACTTCTTGTTTCCTTTCT
GATCTTGTCAACCCTGATCCTAATTCAGGAGGGTTCCCTTTTATGGATGT
TTTTTAGAGATGTATGATGATGATATTTATTTTGTATATATTATTCTGTT
GCTTTACTTAGTTAATCCTaaatttttgtatgatttttatgatTGAAATT
TAGTTTTATTAATAATGGTAGATGATTTATAACTAGGGTTTtgtatattt
tacttttttaaagtACGGTATGATGCACAGCACAATAACTTTCAAACGTG
TTCTCTATTCAAAGTAATCCATCTCCAATCTTTCAGATCTTTGTATATAT
TGGTATATTTCGATCTTAAGTTTATTTTGACGAAGGTGTTGTAGTTAGTG
TTATCAAATCTTAACAAATTCATTCTCGTTTTAGACAACTGTAAACTATG
ATGTAGTAattgaaaagaacaaaaaggaAATAATTATGCTTACCCAATTG
CGTCAACAACTTGCTAAAAATAACTTGAGGTAACATACATTTTGTAAGAT
CTAGCACTGATGATAGTTaccaaaaggctttttttttttttttttaattt
aacttgTAGAATGTCTACTTTTAAATCAATTTGAGGTAACATATTGACGC
TTAGCACACCATTGAAATGAGTTTCAATTCTTCATTCTTAActttcaagt
ttcaatttaaGGAAAGAGCTCGTCCCtatttctatattattattattttt
atttcatttcagcTCAATTGTAGGTGCAGCTAGGATTAAAACTAAACCAC
CCAACATTGTGATCAAAACTGATTGCGTCCAGAGTTACGAGAAAGCTTTA
TCAGTTCTCAATTCTGTGATTGACAAAGAACGTTACacacttcaccatgt
agtatcGAAAAACTTTCTCCAAGGTTCTTGGAAAGGTTCATGTTCACTGC
TTCTCTACAATGTAGTTGATGAACTCTGTGAACAATCAAAGCCACTGATC
CAGTCTTACGTACAAGATTGCGATGGCAAAGTGATCATTTATTCTGACAA
CACTGAATCAAACACCTCATTACAAGACATCAAGGAATTTACTAATGGTG
AGATACCATGTTGTAAGGTTGGCTAgcttttcaaataatttcacTCACTT
CGAAAAAATGAACCTACAACTTTTCGCTTTAACAACTTATCTAAAATATC
ATGAgagatgtgtttttttttctcagataTAAACAAGCAGTATCCTCATC
AAATGGTCATGTTTGAAGAATGTATTGACTCCATAAAGAAATAtgatttg
gtttttgttttgaagttgATGGGGATGAGTTGTACAGAAGAGACACAGCC
ACCCTCTGGCGAGCATCTCCTCACTAATGCATATTTACTGTCCAGTAAAA
AGgtatttccttgttttttttttcgatgatATTTTTGATATCACTACTCC
ACATTACAAGAAGACGGAGAAGGAATCAATTGAGATATTATAatgatgtt
ttttgaaaatcttgatgAATGTTTGTGATTAAAAAGCTTTCTCAGTATCT
TGTTTTTATCGGatctacctggaggtcctaaaattaaacttttctcgata
ttggctcattatttttctttctgattttgGCACAAAGttacaaaatattt
tgcacatagatgcccACGATCAAGCATAATTCNatatgcgttttttgagc
tgaaaaattctttttttacaaaaatctgcttgagccatcttttacctact
ttcatgcaaatagtcagaaaataacaagtccaaaaaaccctttttttagc
cgttttttagctgaaatttacccaaaaatatttttttcaaaaatcgagct
ccgtcacattctttgtgcaaaaaatcgtaaagaataaaagagccaatctc
gagaaaagctaatacctaagtaattgatagtgtgcttataaataaatatc
gaatttggccagtttttctataaaaacaNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNtgggaggtaaacaaagcgcgatattgcggttttcaggcaa
aaagccttacaaaacacccaaaatattGATGCCAAAAGAGCCTCCAAATC
AACTGAAGAACCAAGTTGTTGTTTTTCCCTTTCTAATAGCTTCTGCTAGC
ATCTAaaaaagctttgttttgtttgtttttttcaaattcagtgtatTCTT
AGGAACATATAAAAAAGCCAGATATAAgcaaacaagaagcccgttggctt
gaaggcccagcaaaaagtaacgtgttgaaaacgagcgtgcaaaacagcaa
atgtatgacctTGTTGACATTGATCAAAGTGAAGacgggaaaaaattttc
caaagtcaccgctgtacttctcattggttagacgcttgaaattttattga
atggtctcctaccaaccGGGTCTACAGGCGCAAGTTCACCCGGttgaata
ctctcgggtaccgtgagattgggtaacttgcaaNtctatctcattaaaaa
aattgagtaatttgactaagaacattgatgtatgcttattaatagtgatt
cttatagataaacatgcgttttttgaaccaactataatttttttgcaaaa
atctgcttgaaccgtATTTTACCTATaatggtaccttactttcctgcaaa
aaaatcagaaaaaattaatgatccaatttttcacaaagtccaaaaaaccc
atttttagccgttttttggcccaaatttgcccaaaatttttttttgaaaa
tcgggctctgtcacattcgagggtttatagttatgcatctttgttcaaaa
aatcgtaaagaatgaaagagccaatctcgagaaaagctaataacgaatga
acagacgaacgaacgaacggacaaaggttaatttataggacctccaccgg
ggtaggtccaaaaaagccGCGAATATATATAGTGAGTGGGCGCGTTNccc
cccccccccccccggggcatgttagttggaccagaccgtaaaacagaaaa
ataatctttaaaaaactagacgatgaaatagtttacggtctgcatatcaa
ggctaataaaattcatgtggttTAATATGAGTTAACAGTTAatgtgacag
atccagaaatgaccattttcactgttcatgcaTTGTAACcatgaaaaaca
tttcaatctagttcaaatttacccataagctgcattttagtgtccattaa
cagattccagaatcagtttatactTTAGATaattatgtgagtcgagtttg
aaaaatcaagccaccgatcgtttaatgcgacagatccagaaatgaccatt
ttatttaatatacgtgtagaatcatgaaaaaagtcccaatcttgttcaaa
tttacacatgagctgcatagtgtcctcctgggttggttccccccactaaa
aatcaaaatttttctccattcccccctcttttatttcccccacTATATTT
CAAAATTGTTCGGTTCCCCCCTCTTTTTTGAATTCCCCCAGCTATTTGAA
GATTTTGCGGTTCcccatatggttaacataaaaatgccttaaatcaagtt
tgaaattttggaaagcttgaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAAAAATAGCCTTGAAagtgctggaaaaatgaaattgtatt
gaaaagttggtttatcccaaaagatttgctgattttattgcttaaacagg
ttttgcaataagatcaccttgagatcagtgaagttcccccagtcaaaatc
tcctaaatttatggttttcccccctctttattttcccccagcaaatttca
aatttttcattttcccccatactttataaaaagggccaaaatcagaatcc
ccccccctttataaagggggggggaggacactatgagctgcattttagtc
tccattaacaTGATTCCATTATCAGCTTATTTCaaataattctgtgtcaa
gtttgacaaatcaagccaccaatcgtcaaacgagacagatccagaaataa
ccattttcacgcgtagcatcatggaaaaagttgcaatcttgttccaattt
acacatgggctctattttagtgtccattaccacattccagaatcagttta
ctttgaataattatgtgttcagtttgaaaatcataccacgtcccaccact
gACCACCGTTGTTTTGTTAACAGCCTGAACAGCGACaaatccagaagtga
ctgttttcttatgtagcatcaagaaaaaagtttcaatcttattcaatttt
acacatcagctgcatttcagtctatttatttctatatcagaagccattat
ttcctaaaaNttatttcctaaaaatttataaagtctttttgaaaacaaga
aactaaaaatgaaagtgatttaaggtagaattttcactcataaaacttta
tgaaaacttgagcaaatactgtaagatatggcagaatgttgaaaaaggtt
tataaagaaaaataattacaaagtttctttggtttgaaagtctcttgacc
actaaagcaaagaaaatgttcaagaaagtatgaatcaacctcctcgcttc
gaccaccatcttgttttgttttgaaaattgttttgaaggagcgcggaatc
agaaaataaatcttttatagccagtatccgactttagcaagcttttccct
cttcagacggcaaaattaaaaagaatgttactggttttaagcgccgtttc
taccaaaacggacagacagatACACAGACGAaaaaatgctaatgaaaggc
cctcctatcgctagcgctgggccaatgaGCCGGAGAAACGGCTTTTCTTG
AATCTCTCGAGCTGTTGTTGACATATTTTTATGAAACTATGCACACTAAT
GCAAAATGGTCTTAGATATGACAGAGCATATTTAATTTTGCCCCCCCCCT
TCGGTATATCTATATAATACCGAAGAATATTTTATAGAATGCCTGCAACT
GCCCAGAGTTAGTTATTATATGCATAATAAAAAGTAAATTCGAATTAATC
TCATTCAATTCCTATCTCCGGAACAGCAATGTCAACCCTCTACTGATATa
gctcgatttttgaaaatgccggaagtatCCCGGAAAACTGGTTGTTTGAT
AGTTTCTCGAGACTTCATCATTAGTTTTGTCTATTCTTTTGTACAAAGAT
GTGTATCAACGATTCCCAAAATACGACTTAGTCCGAtttctttgttgttt
tcttCACGCTGCCGACGACGTTTCCTCTCCTCCCATCAATCAatgatgga
aatttttaatatttctatctaactttcatcatcaatCAGCAACAGCTTGT
TTTTAAATATACTAATATATTTTCTTCCTGACTATACTATGCTAATAGTC
CTTATATACTCAGTAGAGAAGTGCCCTAAAGGAGTTCAAGGGACACTTCT
CCTATAATCTAGCAATCAAAcctatttgttttcatttttcactttcaggt
tgaagatattttcgcATTAAACGATGAAGGAAGTGTAAAGGGGAAAGATA
TAACTTTGAAATTCTCGCCACAGAATGGTTCCCATAAAACTACCAATGAT
GAATTTGTTGTTATAACAAACACGtctaaaaatgatataaaatcaTCATT
TGATGTTGAACTTTACCAATCCAAGCTGAAAACTGTAAAATACGGCCAAG
ATATTATAgtcactgaagtgattaactcAACACACACCATTTTCACTGGA
GTTAATGTCAATTCGATACAATCTGATGGTTTAGTTGTTCATGCCAGGAG
ACAGTTAAAAGGGAAAGGGCGAACCGGCAACCAATGGTTATCACCTCTAG
GTTgtatgatgttttcaatgcaatttGATATCCCAATGAATAGTCCTCTT
GGCCGAAGTCTTTCCATGATTCAACACTTAGTTATTGTAGCATTTGTTAA
ATCGATCAAGGAACGTGGCGATGGTTATAAGGATTTAGCACTTGGCATCA
AATGGCCAAATGATATTTACATTGATGGTAAGATTAAGATTGGAGGTATT
ATAGTGAATACTTGTTTATGGCAGAATGATTTTAAAGTGACCGTTGGATT
AGGGGTGAATATAAGTAATGACAAGCCTACTGATTGCTTGAATAGCTTGA
TACGTCATTATAACCAAACGAAAGGTGCACAACTGAAGGAGTTGGTGATT
GAAGATGTTTTGGCAGCAACTTTGAATGAAATTGAGAATTTGGTTTATGT
TTTCCAAAATGAAGGAGCACAAAGGTTTAAAGATGAATATTATCAATATT
GGTTGCACAGGTCTGTATCTTTTACATTATTCCCTtctaaattatctttc
caacgagcgGGTCGTGAGAAAAGGGTAAGATTAAAGTGTCCATAAACTTC
TGAGATAGACTTTAATATCCTAAATCTTCAAGCAAGTGTTCATAGATgtt
caaagatttttcattcTGATATCCACACACATATTATACCCTGCATGACT
ACGAAATACCATCCAGTAACAGTGTGCATTAATAGacagtatttttttct
ttcttttttaatcattttagtGGAAGGAAAGTGACATTGGAAAGTTACAA
CATGAGACAAGCTGAAGTGGTTGGAATTGATGATTATGGTTATCTGGTAG
TCAAGATACTGCAGAATGGAGAAATAGTGACGTTACAACCAGATGGAAAT
AGTTTTGATATGATGAAAAATATGATCAAAATCAAATCGTGACTCACTAT
CTGAATTCTTcctcaatttttttgttaacccaaatattttaaatgaattt
tctaATATTagaattattttgtaaatttttaataattcaaAACACCAAAC
AAAATTTTACAGCTTATCGTTGTTGTTTTTTGCAACATTGCTGTCGTGGG
ACGAgaattttataaagaaa Coding sequence (CDS) from alignment at sc0000348:205916..214385+ >TCONS_00020041 ID=TCONS_00020041|Name=TCONS_00020041|organism=Clytia hemisphaerica|type=CDS|length=7695bp|location=Sequence derived from alignment at sc0000348:205916..214385+ (Clytia hemisphaerica) ATGCTTACCCAATTGCGTCAACAACTTGCTAAAAATAACTTGAGcTCAAT TGTAGGTGCAGCTAGGATTAAAACTAAACCACCCAACATTGTGATCAAAA CTGATTGCGTCCAGAGTTACGAGAAAGCTTTATCAGTTCTCAATTCTGTG ATTGACAAAGAACGTTACacacttcaccatgtagtatcGAAAAACTTTCT CCAAGGTTCTTGGAAAGGTTCATGTTCACTGCTTCTCTACAATGTAGTTG ATGAACTCTGTGAACAATCAAAGCCACTGATCCAGTCTTACGTACAAGAT TGCGATGGCAAAGTGATCATTTATTCTGACAACACTGAATCAAACACCTC ATTACAAGACATCAAGGAATTTACTAATGataTAAACAAGCAGTATCCTC ATCAAATGGTCATGTTTGAAGAATGTATTGACTCCATAAAGAAATAtgat ttggtttttgttttgaagttgATGGGGATGAGTTGTACAGAAGAGACACA GCCACCCTCTGGCGAGCATCTCCTCACTAATGCATATTTACTGTCCAGTA AAAAGgttgaagatattttcgcATTAAACGATGAAGGAAGTGTAAAGGGG AAAGATATAACTTTGAAATTCTCGCCACAGAATGGTTCCCATAAAACTAC CAATGATGAATTTGTTGTTATAACAAACACGtctaaaaatgatataaaat caTCATTTGATGTTGAACTTTACCAATCCAAGCTGAAAACTGTAAAATAC GGCCAAGATATTATAgtcactgaagtgattaactcAACACACACCATTTT CACTGGAGTTAATGTCAATTCGATACAATCTGATGGTTTAGTTGTTCATG CCAGGAGACAGTTAAAAGGGAAAGGGCGAACCGGCAACCAATGGTTATCA CCTCTAGGTTgtatgatgttttcaatgcaatttGATATCCCAATGAATAG TCCTCTTGGCCGAAGTCTTTCCATGATTCAACACTTAGTTATTGTAGCAT TTGTTAAATCGATCAAGGAACGTGGCGATGGTTATAAGGATTTAGCACTT GGCATCAAATGGCCAAATGATATTTACATTGATGGTAAGATTAAGATTGG AGGTATTATAGTGAATACTTGTTTATGGCAGAATGATTTTAAAGTGACCG TTGGATTAGGGGTGAATATAAGTAATGACAAGCCTACTGATTGCTTGAAT AGCTTGATACGTCATTATAACCAAACGAAAGGTGCACAACTGAAGGAGTT GGTGATTGAAGATGTTTTGGCAGCAACTTTGAATGAAATTGAGAATTTGG TTTATGTTTTCCAAAATGAAGGAGCACAAAGGTTTAAAGATGAATATTAT CAATATTGGTTGCACAGtGGAAGGAAAGTGACATTGGAAAGTTACAACAT GAGACAAGCTGAAGTGGTTGGAATTGATGATTATGGTTATCTGGTAGTCA AGATACTGCAGAATGGAGAAATAGTGACGTTACAACCAGATGGAAATAGT TTTGATATGATGAAAAATATGATCAAAATCAAATCGTGAATGCTTACCCA ATTGCGTCAACAACTTGCTAAAAATAACTTGAGcTCAATTGTAGGTGCAG CTAGGATTAAAACTAAACCACCCAACATTGTGATCAAAACTGATTGCGTC CAGAGTTACGAGAAAGCTTTATCAGTTCTCAATTCTGTGATTGACAAAGA ACGTTACacacttcaccatgtagtatcGAAAAACTTTCTCCAAGGTTCTT GGAAAGGTTCATGTTCACTGCTTCTCTACAATGTAGTTGATGAACTCTGT GAACAATCAAAGCCACTGATCCAGTCTTACGTACAAGATTGCGATGGCAA AGTGATCATTTATTCTGACAACACTGAATCAAACACCTCATTACAAGACA TCAAGGAATTTACTAATGataTAAACAAGCAGTATCCTCATCAAATGGTC ATGTTTGAAGAATGTATTGACTCCATAAAGAAATAtgatttggtttttgt tttgaagttgATGGGGATGAGTTGTACAGAAGAGACACAGCCACCCTCTG GCGAGCATCTCCTCACTAATGCATATTTACTGTCCAGTAAAAAGgttgaa gatattttcgcATTAAACGATGAAGGAAGTGTAAAGGGGAAAGATATAAC TTTGAAATTCTCGCCACAGAATGGTTCCCATAAAACTACCAATGATGAAT TTGTTGTTATAACAAACACGtctaaaaatgatataaaatcaTCATTTGAT GTTGAACTTTACCAATCCAAGCTGAAAACTGTAAAATACGGCCAAGATAT TATAgtcactgaagtgattaactcAACACACACCATTTTCACTGGAGTTA ATGTCAATTCGATACAATCTGATGGTTTAGTTGTTCATGCCAGGAGACAG TTAAAAGGGAAAGGGCGAACCGGCAACCAATGGTTATCACCTCTAGGTTg tatgatgttttcaatgcaatttGATATCCCAATGAATAGTCCTCTTGGCC GAAGTCTTTCCATGATTCAACACTTAGTTATTGTAGCATTTGTTAAATCG ATCAAGGAACGTGGCGATGGTTATAAGGATTTAGCACTTGGCATCAAATG GCCAAATGATATTTACATTGATGGTAAGATTAAGATTGGAGGTATTATAG TGAATACTTGTTTATGGCAGAATGATTTTAAAGTGACCGTTGGATTAGGG GTGAATATAAGTAATGACAAGCCTACTGATTGCTTGAATAGCTTGATACG TCATTATAACCAAACGAAAGGTGCACAACTGAAGGAGTTGGTGATTGAAG ATGTTTTGGCAGCAACTTTGAATGAAATTGAGAATTTGGTTTATGTTTTC CAAAATGAAGGAGCACAAAGGTTTAAAGATGAATATTATCAATATTGGTT GCACAGtGGAAGGAAAGTGACATTGGAAAGTTACAACATGAGACAAGCTG AAGTGGTTGGAATTGATGATTATGGTTATCTGGTAGTCAAGATACTGCAG AATGGAGAAATAGTGACGTTACAACCAGATGGAAATAGTTTTGATATGAT GAAAAATATGATCAAAATCAAATCGTGAATGCTTACCCAATTGCGTCAAC AACTTGCTAAAAATAACTTGAGcTCAATTGTAGGTGCAGCTAGGATTAAA ACTAAACCACCCAACATTGTGATCAAAACTGATTGCGTCCAGAGTTACGA GAAAGCTTTATCAGTTCTCAATTCTGTGATTGACAAAGAACGTTACacac ttcaccatgtagtatcGAAAAACTTTCTCCAAGGTTCTTGGAAAGGTTCA TGTTCACTGCTTCTCTACAATGTAGTTGATGAACTCTGTGAACAATCAAA GCCACTGATCCAGTCTTACGTACAAGATTGCGATGGCAAAGTGATCATTT ATTCTGACAACACTGAATCAAACACCTCATTACAAGACATCAAGGAATTT ACTAATGataTAAACAAGCAGTATCCTCATCAAATGGTCATGTTTGAAGA ATGTATTGACTCCATAAAGAAATAtgatttggtttttgttttgaagttgA TGGGGATGAGTTGTACAGAAGAGACACAGCCACCCTCTGGCGAGCATCTC CTCACTAATGCATATTTACTGTCCAGTAAAAAGgttgaagatattttcgc ATTAAACGATGAAGGAAGTGTAAAGGGGAAAGATATAACTTTGAAATTCT CGCCACAGAATGGTTCCCATAAAACTACCAATGATGAATTTGTTGTTATA ACAAACACGtctaaaaatgatataaaatcaTCATTTGATGTTGAACTTTA CCAATCCAAGCTGAAAACTGTAAAATACGGCCAAGATATTATAgtcactg aagtgattaactcAACACACACCATTTTCACTGGAGTTAATGTCAATTCG ATACAATCTGATGGTTTAGTTGTTCATGCCAGGAGACAGTTAAAAGGGAA AGGGCGAACCGGCAACCAATGGTTATCACCTCTAGGTTgtatgatgtttt caatgcaatttGATATCCCAATGAATAGTCCTCTTGGCCGAAGTCTTTCC ATGATTCAACACTTAGTTATTGTAGCATTTGTTAAATCGATCAAGGAACG TGGCGATGGTTATAAGGATTTAGCACTTGGCATCAAATGGCCAAATGATA TTTACATTGATGGTAAGATTAAGATTGGAGGTATTATAGTGAATACTTGT TTATGGCAGAATGATTTTAAAGTGACCGTTGGATTAGGGGTGAATATAAG TAATGACAAGCCTACTGATTGCTTGAATAGCTTGATACGTCATTATAACC AAACGAAAGGTGCACAACTGAAGGAGTTGGTGATTGAAGATGTTTTGGCA GCAACTTTGAATGAAATTGAGAATTTGGTTTATGTTTTCCAAAATGAAGG AGCACAAAGGTTTAAAGATGAATATTATCAATATTGGTTGCACAGtGGAA GGAAAGTGACATTGGAAAGTTACAACATGAGACAAGCTGAAGTGGTTGGA ATTGATGATTATGGTTATCTGGTAGTCAAGATACTGCAGAATGGAGAAAT AGTGACGTTACAACCAGATGGAAATAGTTTTGATATGATGAAAAATATGA TCAAAATCAAATCGTGAATGCTTACCCAATTGCGTCAACAACTTGCTAAA AATAACTTGAGcTCAATTGTAGGTGCAGCTAGGATTAAAACTAAACCACC CAACATTGTGATCAAAACTGATTGCGTCCAGAGTTACGAGAAAGCTTTAT CAGTTCTCAATTCTGTGATTGACAAAGAACGTTACacacttcaccatgta gtatcGAAAAACTTTCTCCAAGGTTCTTGGAAAGGTTCATGTTCACTGCT TCTCTACAATGTAGTTGATGAACTCTGTGAACAATCAAAGCCACTGATCC AGTCTTACGTACAAGATTGCGATGGCAAAGTGATCATTTATTCTGACAAC ACTGAATCAAACACCTCATTACAAGACATCAAGGAATTTACTAATGataT AAACAAGCAGTATCCTCATCAAATGGTCATGTTTGAAGAATGTATTGACT CCATAAAGAAATAtgatttggtttttgttttgaagttgATGGGGATGAGT TGTACAGAAGAGACACAGCCACCCTCTGGCGAGCATCTCCTCACTAATGC ATATTTACTGTCCAGTAAAAAGgttgaagatattttcgcATTAAACGATG AAGGAAGTGTAAAGGGGAAAGATATAACTTTGAAATTCTCGCCACAGAAT GGTTCCCATAAAACTACCAATGATGAATTTGTTGTTATAACAAACACGtc taaaaatgatataaaatcaTCATTTGATGTTGAACTTTACCAATCCAAGC TGAAAACTGTAAAATACGGCCAAGATATTATAgtcactgaagtgattaac tcAACACACACCATTTTCACTGGAGTTAATGTCAATTCGATACAATCTGA TGGTTTAGTTGTTCATGCCAGGAGACAGTTAAAAGGGAAAGGGCGAACCG GCAACCAATGGTTATCACCTCTAGGTTgtatgatgttttcaatgcaattt GATATCCCAATGAATAGTCCTCTTGGCCGAAGTCTTTCCATGATTCAACA CTTAGTTATTGTAGCATTTGTTAAATCGATCAAGGAACGTGGCGATGGTT ATAAGGATTTAGCACTTGGCATCAAATGGCCAAATGATATTTACATTGAT GGTAAGATTAAGATTGGAGGTATTATAGTGAATACTTGTTTATGGCAGAA TGATTTTAAAGTGACCGTTGGATTAGGGGTGAATATAAGTAATGACAAGC CTACTGATTGCTTGAATAGCTTGATACGTCATTATAACCAAACGAAAGGT GCACAACTGAAGGAGTTGGTGATTGAAGATGTTTTGGCAGCAACTTTGAA TGAAATTGAGAATTTGGTTTATGTTTTCCAAAATGAAGGAGCACAAAGGT TTAAAGATGAATATTATCAATATTGGTTGCACAGtGGAAGGAAAGTGACA TTGGAAAGTTACAACATGAGACAAGCTGAAGTGGTTGGAATTGATGATTA TGGTTATCTGGTAGTCAAGATACTGCAGAATGGAGAAATAGTGACGTTAC AACCAGATGGAAATAGTTTTGATATGATGAAAAATATGATCAAAATCAAA TCGTGAATGCTTACCCAATTGCGTCAACAACTTGCTAAAAATAACTTGAG cTCAATTGTAGGTGCAGCTAGGATTAAAACTAAACCACCCAACATTGTGA TCAAAACTGATTGCGTCCAGAGTTACGAGAAAGCTTTATCAGTTCTCAAT TCTGTGATTGACAAAGAACGTTACacacttcaccatgtagtatcGAAAAA CTTTCTCCAAGGTTCTTGGAAAGGTTCATGTTCACTGCTTCTCTACAATG TAGTTGATGAACTCTGTGAACAATCAAAGCCACTGATCCAGTCTTACGTA CAAGATTGCGATGGCAAAGTGATCATTTATTCTGACAACACTGAATCAAA CACCTCATTACAAGACATCAAGGAATTTACTAATGataTAAACAAGCAGT ATCCTCATCAAATGGTCATGTTTGAAGAATGTATTGACTCCATAAAGAAA TAtgatttggtttttgttttgaagttgATGGGGATGAGTTGTACAGAAGA GACACAGCCACCCTCTGGCGAGCATCTCCTCACTAATGCATATTTACTGT CCAGTAAAAAGgttgaagatattttcgcATTAAACGATGAAGGAAGTGTA AAGGGGAAAGATATAACTTTGAAATTCTCGCCACAGAATGGTTCCCATAA AACTACCAATGATGAATTTGTTGTTATAACAAACACGtctaaaaatgata taaaatcaTCATTTGATGTTGAACTTTACCAATCCAAGCTGAAAACTGTA AAATACGGCCAAGATATTATAgtcactgaagtgattaactcAACACACAC CATTTTCACTGGAGTTAATGTCAATTCGATACAATCTGATGGTTTAGTTG TTCATGCCAGGAGACAGTTAAAAGGGAAAGGGCGAACCGGCAACCAATGG TTATCACCTCTAGGTTgtatgatgttttcaatgcaatttGATATCCCAAT GAATAGTCCTCTTGGCCGAAGTCTTTCCATGATTCAACACTTAGTTATTG TAGCATTTGTTAAATCGATCAAGGAACGTGGCGATGGTTATAAGGATTTA GCACTTGGCATCAAATGGCCAAATGATATTTACATTGATGGTAAGATTAA GATTGGAGGTATTATAGTGAATACTTGTTTATGGCAGAATGATTTTAAAG TGACCGTTGGATTAGGGGTGAATATAAGTAATGACAAGCCTACTGATTGC TTGAATAGCTTGATACGTCATTATAACCAAACGAAAGGTGCACAACTGAA GGAGTTGGTGATTGAAGATGTTTTGGCAGCAACTTTGAATGAAATTGAGA ATTTGGTTTATGTTTTCCAAAATGAAGGAGCACAAAGGTTTAAAGATGAA TATTATCAATATTGGTTGCACAGtGGAAGGAAAGTGACATTGGAAAGTTA CAACATGAGACAAGCTGAAGTGGTTGGAATTGATGATTATGGTTATCTGG TAGTCAAGATACTGCAGAATGGAGAAATAGTGACGTTACAACCAGATGGA AATAGTTTTGATATGATGAAAAATATGATCAAAATCAAATCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00020041-exon-sc0000348-1491911889:205916..206030 | TCONS_00020041-exon-sc0000348-1491911889:205916..206030 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1510915933:205916..206030 | TCONS_00020041-exon-sc0000348-1510915933:205916..206030 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1575043694:205916..206030 | TCONS_00020041-exon-sc0000348-1575043694:205916..206030 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1491911889:206327..206756 | TCONS_00020041-exon-sc0000348-1491911889:206327..206756 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1510915933:206327..206756 | TCONS_00020041-exon-sc0000348-1510915933:206327..206756 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1575043694:206327..206756 | TCONS_00020041-exon-sc0000348-1575043694:206327..206756 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1491911889:206884..207228 | TCONS_00020041-exon-sc0000348-1491911889:206884..207228 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1510915933:206884..207228 | TCONS_00020041-exon-sc0000348-1510915933:206884..207228 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1575043694:206884..207228 | TCONS_00020041-exon-sc0000348-1575043694:206884..207228 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1491911889:207390..208044 | TCONS_00020041-exon-sc0000348-1491911889:207390..208044 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1510915933:207390..208044 | TCONS_00020041-exon-sc0000348-1510915933:207390..208044 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1575043694:207390..208044 | TCONS_00020041-exon-sc0000348-1575043694:207390..208044 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1491911889:208278..208612 | TCONS_00020041-exon-sc0000348-1491911889:208278..208612 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1510915933:208278..208612 | TCONS_00020041-exon-sc0000348-1510915933:208278..208612 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1575043694:208278..208612 | TCONS_00020041-exon-sc0000348-1575043694:208278..208612 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1491911889:208742..208917 | TCONS_00020041-exon-sc0000348-1491911889:208742..208917 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1510915933:208742..208917 | TCONS_00020041-exon-sc0000348-1510915933:208742..208917 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1575043694:208742..208917 | TCONS_00020041-exon-sc0000348-1575043694:208742..208917 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1491911889:212964..213775 | TCONS_00020041-exon-sc0000348-1491911889:212964..213775 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1510915933:212964..213775 | TCONS_00020041-exon-sc0000348-1510915933:212964..213775 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1575043694:212964..213775 | TCONS_00020041-exon-sc0000348-1575043694:212964..213775 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1491911889:214036..214385 | TCONS_00020041-exon-sc0000348-1491911889:214036..214385 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1510915933:214036..214385 | TCONS_00020041-exon-sc0000348-1510915933:214036..214385 | Clytia hemisphaerica | exon |
| TCONS_00020041-exon-sc0000348-1575043694:214036..214385 | TCONS_00020041-exon-sc0000348-1575043694:214036..214385 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000348 | supercontig | sc0000348:205916..214385 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
| GO:0006464 | cellular protein modification process |
Vocabulary: Molecular Function
| Term | Definition |
| GO:0004077 | biotin-[acetyl-CoA-carboxylase] ligase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006464 |
cellular protein modification process |
| molecular_function |
GO:0004077 |
biotin-[acetyl-CoA-carboxylase] ligase activity |
Blast
BLAST of TCONS_00020041 vs. Swiss-Prot (Human)
Match: LANC3 (LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2) HSP 1 Score: 248.44 bits (633), Expect = 2.085e-72 Identity = 124/235 (52.77%), Postives = 164/235 (69.79%), Query Frame = 2
Query: 416 RTIVSNDTVLPLCNTIIESGKRTAQLHNSECPLMFTYYNTDYLGAGHGLSSILLMLLNFPVCFSTKPDVEELIKKSVDYLLQFEDQGGNYPPTPGETRDDWNELVHWCHGGPGNVYLFTKAYIVWKEEKYLQAVLRIGELVWKKGLLKKGPGICHGIAGNGYVFLLLYHLTSDEKQLNRARQFAAFMQTEEFKAISRVPDAPYSLFEGIAGTSCFLSDLVNPDPNSGGFPFMDVF 1120
+ +++ + +C I++SGK+ A PLM++YY T+YLGA HGLSSIL MLL++ KP EL+ +SVD+L++ ++Q N+PP GET + NELVHWCHG PG YLF KAY+V K+ +YL +R GEL W+KGLLKKGPGICHG+AG+ YVFLLLY LT + K + RA++FA F+ TEEFKA SRV ++ YSL+EG +GT CFL DL+ PN FP VF
Sbjct: 190 QEVLTPAQIKSICQAILDSGKQYAIKKRKPFPLMYSYYGTEYLGAAHGLSSILQMLLSYHE--HLKPSDRELVWQSVDFLME-QEQNCNWPPELGETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAQFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQ--PNQAEFPLFSVF 419
The following BLAST results are available for this feature:
|