TCONS_00020021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020021
Unique NameTCONS_00020021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020021 ID=TCONS_00020021|Name=TCONS_00020021|organism=Clytia hemisphaerica|type=transcript|length=355bp
GTGGTAGAGATCAACCGTTTCAGGTCAAAAGAAGACTGGTTCTACATACC
AACAAACAACATGATTGCAGATCTTGGAACCAGACGTGGTGCAACCATTG
CTGATGTCAGCCAAGACTCAAAGTGGATGAACGGTATGGACTGGATGAGA
CTTCCACCGACGGAATTTCTAATCAAATCTGCTCAAGACCTGAAAGTAAC
CGACTCGGACATCAAAGAAATCGACAAAGAGAGGACAATTCTTGTTCATC
ATGCTTCAACTACACCTGATCCAATTCAACTTGCAAAACAGAGGTATCAA
TTCTCCAAATATCTGATCGACCCTAACCATCGTAGATTTTCAATCACTGT
TCGCA
Run BLAST on NCBI

protein sequence of TCONS_00020021-protein

>TCONS_00020021-protein ID=TCONS_00020021-protein|Name=TCONS_00020021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
VVEINRFRSKEDWFYIPTNNMIADLGTRRGATIADVSQDSKWMNGMDWMR
LPPTEFLIKSAQDLKVTDSDIKEIDKERTILVHHASTTPDPIQLAKQRYQ
FSKYLIDPNHRRFSITVR
Run BLAST on NCBI

transcript from alignment at sc0000345:336028..336382

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020021 ID=TCONS_00020021|Name=TCONS_00020021|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000345:336028..336382 (Clytia hemisphaerica)
TGCGAACAGTGATTGAAAATCTACGATGGTTAGGGTCGATCAGATATTTG
GAGAATTGATACCTCTGTTTTGCAAGTTGAATTGGATCAGGTGTAGTTGA
AGCATGATGAACAAGAATTGTCCTCTCTTTGTCGATTTCTTTGATGTCCG
AGTCGGTTACTTTCAGGTCTTGAGCAGATTTGATTAGAAATTCCGTCGGT
GGAAGTCTCATCCAGTCCATACCGTTCATCCACTTTGAGTCTTGGCTGAC
ATCAGCAATGGTTGCACCACGTCTGGTTCCAAGATCTGCAATCATGTTGT
TTGTTGGTATGTAGAACCAGTCTTCTTTTGACCTGAAACGGTTGATCTCT
ACCAC

Coding sequence (CDS) from alignment at sc0000345:336028..336382

>TCONS_00020021 ID=TCONS_00020021|Name=TCONS_00020021|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0000345:336028..336382 (Clytia hemisphaerica)
GCGAACAGTGATTGAAAATCTACGATGGTTAGGGTCGATCAGATATTTGG
AGAATTGATACCTCTGTTTTGCAAGTTGAATTGGATCAGGTGTAGTTGAA
GCATGATGAACAAGAATTGTCCTCTCTTTGTCGATTTCTTTGATGTCCGA
GTCGGTTACTTTCAGGTCTTGAGCAGATTTGATTAGAAATTCCGTCGGTG
GAAGTCTCATCCAGTCCATACCGTTCATCCACTTTGAGTCTTGGCTGACA
TCAGCAATGGTTGCACCACGTCTGGTTCCAAGATCTGCAATCATGTTGTT
TGTTGGTATGTAGAACCAGTCTTCTTTTGACCTGAAACGGTTGATCTCTA
CCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011253XLOC_011253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020021-exon-sc0000345-1491911889:336028..336382TCONS_00020021-exon-sc0000345-1491911889:336028..336382Clytia hemisphaericaexon
TCONS_00020021-exon-sc0000345-1510915933:336028..336382TCONS_00020021-exon-sc0000345-1510915933:336028..336382Clytia hemisphaericaexon
TCONS_00020021-exon-sc0000345-1575043694:336028..336382TCONS_00020021-exon-sc0000345-1575043694:336028..336382Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020021-proteinTCONS_00020021-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:336028..336382 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.39304	2.15828	1.34986	1.3133	2.15119	3.03988	0.937237	4.59927	1.22862	2.28276	2.21571	1.39963	0.808052	1.39248	0.579082	0.674329	0.182418	0.560917	0.331322	1.08122	0.234944	0.343793	0.455894	0	7.21156	5.95816	0.999596	0	4.97874	2.13186
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00020021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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